Strain Fitness in Variovorax sp. SCN45 around GFF5878

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
91,726	+		GFF5876	0.87	+0.2
91,726	+		GFF5876	0.87	-0.6
91,726	+		GFF5876	0.87	-0.4
91,727	-		GFF5876	0.87	+0.6
91,738	+		GFF5876	0.87	+2.2
91,738	+		GFF5876	0.87	+0.6
91,738	+		GFF5876	0.87	-1.0
91,738	+		GFF5876	0.87	-2.0
91,738	+		GFF5876	0.87	-0.4
91,738	+		GFF5876	0.87	+0.6
91,738	+		GFF5876	0.87	-0.6
91,738	+		GFF5876	0.87	-0.1
91,738	+		GFF5876	0.87	+1.2
91,738	+		GFF5876	0.87	-1.0
91,738	+		GFF5876	0.87	-0.8
91,739	-		GFF5876	0.88	-1.8
91,739	-		GFF5876	0.88	-0.4
91,739	-		GFF5876	0.88	+0.6
91,739	-		GFF5876	0.88	+0.2
91,739	-		GFF5876	0.88	-2.1
91,739	-		GFF5876	0.88	+1.2
91,739	-		GFF5876	0.88	-1.0
91,739	-		GFF5876	0.88	-0.4
91,912	+				-1.5
91,912	+				-4.3
91,912	+				-1.3
91,912	+				-0.8
91,912	+				+0.6
91,912	+				+1.2
91,912	+				+0.7
91,913	-				-0.1
91,913	-				-3.0
91,913	-				+0.3
91,913	-				-3.1
91,913	-				+0.6
91,913	-				+2.2
91,915	+				-2.4
91,915	+				-0.6
91,915	+				-1.1
91,915	+				-0.1
91,915	+				+1.1
91,915	+				-2.9
91,915	+				-1.7
91,916	-				-2.9
91,916	-				-3.3
91,924	+				-1.6
91,924	+				+1.2
91,924	+				-1.0
91,925	-				-3.2
91,925	-				-3.4
92,125	+				+2.2
92,125	+				-0.8
92,125	+				-0.8
92,125	+				-0.6
92,126	-				-0.8
92,126	-				+1.2
92,391	+		GFF5877	0.53	-0.1
92,392	-		GFF5877	0.53	+0.6
92,392	-		GFF5877	0.53	-0.4
92,481	+		GFF5877	0.68	-0.6
92,481	+		GFF5877	0.68	-0.8
92,482	-		GFF5877	0.68	-0.1
92,482	-		GFF5877	0.68	-0.6
92,482	-		GFF5877	0.68	-1.0
92,482	-		GFF5877	0.68	-1.6
92,482	-		GFF5877	0.68	+0.2
92,482	-		GFF5877	0.68	+0.2
92,482	-		GFF5877	0.68	-0.1
92,553	+		GFF5877	0.80	-0.1
92,553	+		GFF5877	0.80	+0.2
92,553	+		GFF5877	0.80	+0.2
92,554	-		GFF5877	0.80	+0.6
92,728	+				+0.4
92,728	+				+1.8
92,728	+				+0.2
92,729	-				-0.4
92,729	-				-0.4
92,841	+		GFF5878	0.11	-2.8
92,841	+		GFF5878	0.11	+0.6
92,841	+		GFF5878	0.11	-1.6
92,841	+		GFF5878	0.11	-2.2
92,841	+		GFF5878	0.11	-1.2
92,841	+		GFF5878	0.11	-0.6
92,842	-		GFF5878	0.11	-4.2
92,842	-		GFF5878	0.11	+0.6
92,842	-		GFF5878	0.11	-3.3
92,842	-		GFF5878	0.11	-0.8
92,899	+		GFF5878	0.15	-4.1
92,899	+		GFF5878	0.15	-1.6
92,899	+		GFF5878	0.15	-4.7
92,899	+		GFF5878	0.15	-1.5
92,900	-		GFF5878	0.15	+0.6
92,900	-		GFF5878	0.15	-0.7
92,900	-		GFF5878	0.15	-1.2
92,900	-		GFF5878	0.15	-0.4
93,440	+		GFF5878	0.57	-0.9
93,475	+		GFF5878	0.60	+0.4
93,475	+		GFF5878	0.60	-0.8
93,475	+		GFF5878	0.60	-1.7
93,475	+		GFF5878	0.60	-1.3
93,475	+		GFF5878	0.60	+1.0
93,475	+		GFF5878	0.60	-0.7
93,475	+		GFF5878	0.60	-1.7
93,476	-		GFF5878	0.60	+0.2
93,476	-		GFF5878	0.60	+1.5
93,476	-		GFF5878	0.60	-0.1
93,476	-		GFF5878	0.60	+1.5
93,476	-		GFF5878	0.60	-1.4
93,476	-		GFF5878	0.60	+1.2
93,476	-		GFF5878	0.60	-1.7
93,476	-		GFF5878	0.60	-1.1
93,766	+		GFF5878	0.82	-0.4
93,766	+		GFF5878	0.82	+1.3
93,766	+		GFF5878	0.82	-1.0
93,766	+		GFF5878	0.82	-3.1
93,767	-		GFF5878	0.82	+0.2
94,068	+				+1.4
94,068	+				-1.4
94,068	+				-2.5
94,068	+				-3.0
94,068	+				+0.6
94,068	+				-0.3
94,068	+				-0.7
94,069	-				-0.5
94,069	-				-2.3
94,069	-				-1.7
94,069	-				-3.5
94,069	-				-1.1
94,227	+		GFF5879	0.13	-2.3
94,227	+		GFF5879	0.13	-2.4
94,227	+		GFF5879	0.13	-1.7
94,227	+		GFF5879	0.13	-2.1
94,227	+		GFF5879	0.13	+1.0
94,227	+		GFF5879	0.13	-2.9
94,227	+		GFF5879	0.13	-1.7
94,227	+		GFF5879	0.13	-0.1
94,227	+		GFF5879	0.13	-1.3
94,228	-		GFF5879	0.14	-1.5
94,228	-		GFF5879	0.14	+1.1
94,228	-		GFF5879	0.14	+0.2
94,623	+		GFF5879	0.80	-0.4
94,623	+		GFF5879	0.80	+0.2
94,623	+		GFF5879	0.80	-0.8
94,624	-		GFF5879	0.81	+0.1
94,624	-		GFF5879	0.81	+0.2
94,665	+		GFF5879	0.87	-1.0
94,665	+		GFF5879	0.87	+0.2
94,665	+		GFF5879	0.87	-0.6
94,666	-		GFF5879	0.88	-1.0
94,666	-		GFF5879	0.88	-0.1
94,666	-		GFF5879	0.88	-1.3
94,834	+				+0.2
94,835	-				-0.7
94,835	-				+1.4
94,835	-				-0.4
94,835	-				-3.5
94,842	+				-0.6
94,842	+				+0.9
94,842	+				-1.0
94,843	-				+1.5
94,989	+				+1.0
94,989	+				+0.2
94,989	+				+0.6
94,990	-				+0.6
94,990	-				-0.1
94,990	-				-1.3
94,990	-				-0.2
94,990	-				-2.3