Strain Fitness in Variovorax sp. SCN45 around GFF5851

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5850 and GFF5851 are separated by 21 nucleotidesGFF5851 and GFF5852 are separated by 7 nucleotides GFF5850 - Aldehyde dehydrogenase (EC 1.2.1.3); Probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68), at 28,225 to 29,625 GFF5850 GFF5851 - TPR repeat, at 29,647 to 30,915 GFF5851 GFF5852 - Type I secretion membrane fusion protein, HlyD family @ Type I secretion system, membrane fusion protein LapC, at 30,923 to 32,179 GFF5852 Position (kb) 29 30 31Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 28.908 kb on + strand, within GFF5850at 28.975 kb on + strand, within GFF5850at 28.975 kb on + strand, within GFF5850at 28.976 kb on - strand, within GFF5850at 28.976 kb on - strand, within GFF5850at 28.976 kb on - strand, within GFF5850at 29.044 kb on + strand, within GFF5850at 29.044 kb on + strand, within GFF5850at 29.044 kb on + strand, within GFF5850at 29.074 kb on + strand, within GFF5850at 29.074 kb on + strand, within GFF5850at 29.074 kb on + strand, within GFF5850at 29.075 kb on - strand, within GFF5850at 29.285 kb on - strand, within GFF5850at 29.311 kb on + strand, within GFF5850at 29.311 kb on + strand, within GFF5850at 29.311 kb on + strand, within GFF5850at 29.312 kb on - strand, within GFF5850at 29.344 kb on + strand, within GFF5850at 29.345 kb on - strand, within GFF5850at 29.489 kb on - strandat 29.702 kb on + strandat 29.703 kb on - strandat 29.753 kb on + strandat 29.753 kb on + strandat 29.783 kb on + strand, within GFF5851at 29.783 kb on + strand, within GFF5851at 29.784 kb on - strand, within GFF5851at 30.035 kb on + strand, within GFF5851at 30.692 kb on + strand, within GFF5851at 30.692 kb on + strand, within GFF5851at 30.692 kb on + strand, within GFF5851at 30.693 kb on - strand, within GFF5851at 30.701 kb on + strand, within GFF5851at 30.701 kb on + strand, within GFF5851at 30.702 kb on - strand, within GFF5851at 30.915 kb on + strandat 30.915 kb on + strandat 30.915 kb on + strandat 30.916 kb on - strandat 30.916 kb on - strandat 30.972 kb on + strandat 30.972 kb on + strandat 30.973 kb on - strandat 30.973 kb on - strandat 30.973 kb on - strandat 31.087 kb on - strand, within GFF5852at 31.087 kb on - strand, within GFF5852at 31.087 kb on - strand, within GFF5852at 31.087 kb on - strand, within GFF5852at 31.087 kb on - strand, within GFF5852at 31.087 kb on - strand, within GFF5852at 31.087 kb on - strand, within GFF5852at 31.096 kb on - strand, within GFF5852at 31.099 kb on - strand, within GFF5852at 31.099 kb on - strand, within GFF5852at 31.099 kb on - strand, within GFF5852at 31.099 kb on - strand, within GFF5852at 31.102 kb on - strand, within GFF5852at 31.102 kb on - strand, within GFF5852at 31.102 kb on - strand, within GFF5852at 31.102 kb on - strand, within GFF5852at 31.174 kb on - strand, within GFF5852at 31.182 kb on + strand, within GFF5852at 31.183 kb on - strand, within GFF5852at 31.189 kb on - strand, within GFF5852at 31.189 kb on - strand, within GFF5852at 31.189 kb on - strand, within GFF5852at 31.476 kb on + strand, within GFF5852at 31.476 kb on + strand, within GFF5852at 31.479 kb on + strand, within GFF5852at 31.735 kb on + strand, within GFF5852at 31.736 kb on - strand, within GFF5852

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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28,908 + GFF5850 0.49 -2.8
28,975 + GFF5850 0.54 -2.5
28,975 + GFF5850 0.54 -1.1
28,976 - GFF5850 0.54 -2.2
28,976 - GFF5850 0.54 -0.1
28,976 - GFF5850 0.54 -0.7
29,044 + GFF5850 0.58 -2.0
29,044 + GFF5850 0.58 -2.0
29,044 + GFF5850 0.58 +0.3
29,074 + GFF5850 0.61 -0.6
29,074 + GFF5850 0.61 +1.0
29,074 + GFF5850 0.61 +1.7
29,075 - GFF5850 0.61 -0.1
29,285 - GFF5850 0.76 -1.7
29,311 + GFF5850 0.78 -2.8
29,311 + GFF5850 0.78 -1.4
29,311 + GFF5850 0.78 -0.8
29,312 - GFF5850 0.78 -1.3
29,344 + GFF5850 0.80 +0.6
29,345 - GFF5850 0.80 +0.4
29,489 - +0.6
29,702 + -1.4
29,703 - -0.9
29,753 + +0.1
29,753 + +2.8
29,783 + GFF5851 0.11 -0.7
29,783 + GFF5851 0.11 -0.1
29,784 - GFF5851 0.11 -2.0
30,035 + GFF5851 0.31 -2.9
30,692 + GFF5851 0.82 +1.8
30,692 + GFF5851 0.82 -1.2
30,692 + GFF5851 0.82 -1.0
30,693 - GFF5851 0.82 -1.6
30,701 + GFF5851 0.83 -2.5
30,701 + GFF5851 0.83 +0.9
30,702 - GFF5851 0.83 -0.3
30,915 + +0.5
30,915 + -0.9
30,915 + -2.5
30,916 - -0.1
30,916 - -0.6
30,972 + -0.1
30,972 + -3.6
30,973 - -1.1
30,973 - -0.1
30,973 - +1.5
31,087 - GFF5852 0.13 -1.7
31,087 - GFF5852 0.13 +3.0
31,087 - GFF5852 0.13 +1.6
31,087 - GFF5852 0.13 -1.3
31,087 - GFF5852 0.13 +1.0
31,087 - GFF5852 0.13 -0.1
31,087 - GFF5852 0.13 +0.3
31,096 - GFF5852 0.14 -0.8
31,099 - GFF5852 0.14 -2.1
31,099 - GFF5852 0.14 +0.9
31,099 - GFF5852 0.14 +0.2
31,099 - GFF5852 0.14 +0.2
31,102 - GFF5852 0.14 -0.6
31,102 - GFF5852 0.14 +0.6
31,102 - GFF5852 0.14 -0.6
31,102 - GFF5852 0.14 +1.1
31,174 - GFF5852 0.20 +0.1
31,182 + GFF5852 0.21 -1.1
31,183 - GFF5852 0.21 -2.7
31,189 - GFF5852 0.21 -0.5
31,189 - GFF5852 0.21 -1.8
31,189 - GFF5852 0.21 -1.0
31,476 + GFF5852 0.44 +2.2
31,476 + GFF5852 0.44 -2.4
31,479 + GFF5852 0.44 -0.6
31,735 + GFF5852 0.65 +0.0
31,736 - GFF5852 0.65 -1.0

Or see this region's nucleotide sequence