Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5847 and GFF5848 overlap by 1 nucleotides GFF5848 and GFF5849 are separated by 13 nucleotides GFF5849 and GFF5850 are separated by 147 nucleotides
GFF5847 - putative membrane protein, at 24,091 to 26,745
GFF5847
GFF5848 - Flagellar motor protein, at 26,745 to 27,404
GFF5848
GFF5849 - FIG01210206: hypothetical protein, at 27,418 to 28,077
GFF5849
GFF5850 - Aldehyde dehydrogenase (EC 1.2.1.3); Probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68), at 28,225 to 29,625
GFF5850
Position (kb) 27
28
29 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 26.632 kb on + strand at 26.632 kb on + strand at 26.632 kb on + strand at 26.632 kb on + strand at 26.632 kb on + strand at 26.632 kb on + strand at 26.633 kb on - strand at 26.633 kb on - strand at 26.633 kb on - strand at 26.633 kb on - strand at 26.633 kb on - strand at 26.633 kb on - strand at 27.099 kb on + strand, within GFF5848 at 27.099 kb on + strand, within GFF5848 at 27.099 kb on + strand, within GFF5848 at 27.100 kb on - strand, within GFF5848 at 27.100 kb on - strand, within GFF5848 at 27.100 kb on - strand, within GFF5848 at 27.583 kb on + strand, within GFF5849 at 27.934 kb on + strand, within GFF5849 at 27.934 kb on + strand, within GFF5849 at 27.934 kb on + strand, within GFF5849 at 27.935 kb on - strand, within GFF5849 at 27.955 kb on + strand, within GFF5849 at 27.955 kb on + strand, within GFF5849 at 27.956 kb on - strand, within GFF5849 at 27.956 kb on - strand, within GFF5849 at 27.956 kb on - strand, within GFF5849 at 28.576 kb on + strand, within GFF5850 at 28.577 kb on - strand, within GFF5850 at 28.585 kb on + strand, within GFF5850 at 28.586 kb on - strand, within GFF5850 at 28.586 kb on - strand, within GFF5850 at 28.908 kb on + strand, within GFF5850 at 28.975 kb on + strand, within GFF5850 at 28.975 kb on + strand, within GFF5850 at 28.976 kb on - strand, within GFF5850 at 28.976 kb on - strand, within GFF5850 at 28.976 kb on - strand, within GFF5850 at 29.044 kb on + strand, within GFF5850 at 29.044 kb on + strand, within GFF5850 at 29.044 kb on + strand, within GFF5850 at 29.074 kb on + strand, within GFF5850 at 29.074 kb on + strand, within GFF5850 at 29.074 kb on + strand, within GFF5850 at 29.075 kb on - strand, within GFF5850
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 26,632 + +1.2 26,632 + -0.7 26,632 + -1.6 26,632 + -0.0 26,632 + -0.8 26,632 + -1.9 26,633 - -0.4 26,633 - +3.5 26,633 - -0.4 26,633 - -1.6 26,633 - -1.2 26,633 - -0.4 27,099 + GFF5848 0.54 -0.8 27,099 + GFF5848 0.54 -0.1 27,099 + GFF5848 0.54 -0.7 27,100 - GFF5848 0.54 -0.7 27,100 - GFF5848 0.54 -0.6 27,100 - GFF5848 0.54 -2.0 27,583 + GFF5849 0.25 +0.2 27,934 + GFF5849 0.78 -3.5 27,934 + GFF5849 0.78 +0.6 27,934 + GFF5849 0.78 +2.6 27,935 - GFF5849 0.78 -0.6 27,955 + GFF5849 0.81 -0.0 27,955 + GFF5849 0.81 +0.7 27,956 - GFF5849 0.82 -1.0 27,956 - GFF5849 0.82 -1.0 27,956 - GFF5849 0.82 +0.1 28,576 + GFF5850 0.25 -3.3 28,577 - GFF5850 0.25 -2.2 28,585 + GFF5850 0.26 -2.3 28,586 - GFF5850 0.26 -0.5 28,586 - GFF5850 0.26 -1.7 28,908 + GFF5850 0.49 -2.8 28,975 + GFF5850 0.54 -2.5 28,975 + GFF5850 0.54 -1.1 28,976 - GFF5850 0.54 -2.2 28,976 - GFF5850 0.54 -0.1 28,976 - GFF5850 0.54 -0.7 29,044 + GFF5850 0.58 -2.0 29,044 + GFF5850 0.58 -2.0 29,044 + GFF5850 0.58 +0.3 29,074 + GFF5850 0.61 -0.6 29,074 + GFF5850 0.61 +1.0 29,074 + GFF5850 0.61 +1.7 29,075 - GFF5850 0.61 -0.1
Or see this region's nucleotide sequence