Strain Fitness in Variovorax sp. SCN45 around GFF5845

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
21,567	-		GFF5844	0.29	-0.3
21,728	+		GFF5844	0.42	-0.2
21,729	-		GFF5844	0.43	-1.8
21,833	+		GFF5844	0.51	+1.2
21,834	-		GFF5844	0.51	-0.8
21,834	-		GFF5844	0.51	-3.7
21,835	+		GFF5844	0.52	-0.0
21,835	+		GFF5844	0.52	+2.8
21,835	+		GFF5844	0.52	-1.4
21,836	-		GFF5844	0.52	-1.0
21,836	-		GFF5844	0.52	-0.5
21,836	-		GFF5844	0.52	+0.6
21,836	-		GFF5844	0.52	-0.1
21,836	-		GFF5844	0.52	-0.4
21,917	+		GFF5844	0.59	-1.5
21,917	+		GFF5844	0.59	+0.3
21,917	+		GFF5844	0.59	-2.6
21,917	+		GFF5844	0.59	-0.0
21,917	+		GFF5844	0.59	-4.2
21,917	+		GFF5844	0.59	-1.8
21,917	+		GFF5844	0.59	+1.2
21,917	+		GFF5844	0.59	-3.0
21,917	+		GFF5844	0.59	-0.8
21,917	+		GFF5844	0.59	-0.0
21,917	+		GFF5844	0.59	-0.1
21,917	+		GFF5844	0.59	-1.4
21,917	+		GFF5844	0.59	+0.9
21,917	+		GFF5844	0.59	+0.9
21,917	+		GFF5844	0.59	+0.9
21,917	+		GFF5844	0.59	-0.1
21,917	+		GFF5844	0.59	-1.5
21,917	+		GFF5844	0.59	+1.8
21,918	-		GFF5844	0.59	-0.8
21,918	-		GFF5844	0.59	-3.7
21,918	-		GFF5844	0.59	+1.4
21,918	-		GFF5844	0.59	-1.3
21,918	-		GFF5844	0.59	+0.2
21,918	-		GFF5844	0.59	+1.2
21,918	-		GFF5844	0.59	-0.8
21,918	-		GFF5844	0.59	-0.8
21,918	-		GFF5844	0.59	-0.9
21,918	-		GFF5844	0.59	+1.2
21,918	-		GFF5844	0.59	-3.5
21,918	-		GFF5844	0.59	+2.7
21,918	-		GFF5844	0.59	+1.5
21,918	-		GFF5844	0.59	-0.4
21,918	-		GFF5844	0.59	-0.6
21,918	-		GFF5844	0.59	+0.7
21,918	-		GFF5844	0.59	-0.9
21,918	-		GFF5844	0.59	-0.6
21,918	-		GFF5844	0.59	+0.4
21,918	-		GFF5844	0.59	-1.1
21,918	-		GFF5844	0.59	+2.2
21,918	-		GFF5844	0.59	+0.7
21,918	-		GFF5844	0.59	+0.1
21,918	-		GFF5844	0.59	-0.6
21,918	-		GFF5844	0.59	-0.3
21,966	-		GFF5844	0.63	+1.0
22,037	+		GFF5844	0.69	+1.1
22,038	-		GFF5844	0.69	-1.3
22,038	-		GFF5844	0.69	+1.2
22,038	-		GFF5844	0.69	-0.6
22,145	+		GFF5844	0.78	+2.1
22,146	-		GFF5844	0.78	+3.2
22,146	-		GFF5844	0.78	+3.9
22,146	-		GFF5844	0.78	+1.0
22,346	+				-1.5
22,347	-				-1.4
22,347	-				-2.7
22,347	-				+0.8
22,347	-				-1.4
22,347	-				-2.0
22,347	-				-1.3
22,409	+				-0.5
22,409	-				+0.5
22,545	+		GFF5845	0.14	-0.2
22,545	+		GFF5845	0.14	-2.4
22,545	+		GFF5845	0.14	-3.9
22,545	+		GFF5845	0.14	+0.2
22,545	+		GFF5845	0.14	+1.3
22,545	+		GFF5845	0.14	-1.7
22,546	-		GFF5845	0.14	-1.5
22,546	-		GFF5845	0.14	-0.4
22,546	-		GFF5845	0.14	+2.5
22,693	-		GFF5845	0.31	-1.4
22,693	-		GFF5845	0.31	-0.6
23,073	+		GFF5845	0.76	-1.9
23,073	+		GFF5845	0.76	-3.6
23,074	-		GFF5845	0.76	+1.6
23,074	-		GFF5845	0.76	-2.1
23,074	-		GFF5845	0.76	+1.2
23,074	-		GFF5845	0.76	-2.3
23,074	-		GFF5845	0.76	-2.6
23,145	+		GFF5845	0.84	-0.7
23,145	+		GFF5845	0.84	-1.6
23,145	+		GFF5845	0.84	-0.8
23,145	+		GFF5845	0.84	-4.0
23,145	+		GFF5845	0.84	+0.6
23,146	-		GFF5845	0.84	+0.1
23,146	-		GFF5845	0.84	+1.1
23,146	-		GFF5845	0.84	+0.1
23,146	-		GFF5845	0.84	+0.7
23,146	-		GFF5845	0.84	+1.4
23,340	+				+0.6
23,340	+				-1.6
23,340	+				-1.0
23,341	-				+0.1
23,348	+				+1.3
23,349	-				+1.1
24,160	+				-2.0
24,161	-				-1.8
24,214	+				+4.5
24,215	-				-1.6