Strain Fitness in Variovorax sp. SCN45 around GFF5822

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
200,035	+				+3.5
200,080	+				+2.1
200,089	+				-0.8
200,089	+				-4.6
200,090	-				-1.1
200,106	-				-1.1
200,111	+				+0.6
200,112	-				-2.0
200,176	+				+0.5
200,200	+		GFF5821	0.10	-2.3
200,201	-		GFF5821	0.11	-1.7
200,347	+		GFF5821	0.28	-1.3
200,348	-		GFF5821	0.28	-0.2
200,348	-		GFF5821	0.28	-2.3
200,348	-		GFF5821	0.28	+0.8
200,384	+		GFF5821	0.33	+0.6
200,384	+		GFF5821	0.33	-1.9
200,385	-		GFF5821	0.33	-2.5
200,385	-		GFF5821	0.33	+1.2
200,402	+		GFF5821	0.35	+1.1
200,403	-		GFF5821	0.35	+0.0
200,403	-		GFF5821	0.35	+1.7
200,474	+		GFF5821	0.44	-1.9
200,475	-		GFF5821	0.44	-0.4
200,475	-		GFF5821	0.44	+0.9
200,478	+		GFF5821	0.44	-0.2
200,478	+		GFF5821	0.44	-1.2
200,480	+		GFF5821	0.44	+2.5
200,480	+		GFF5821	0.44	+1.9
200,480	+		GFF5821	0.44	+0.3
200,481	-		GFF5821	0.44	-1.2
200,481	-		GFF5821	0.44	-0.2
200,513	+		GFF5821	0.48	-1.5
200,513	+		GFF5821	0.48	-1.0
200,623	-		GFF5821	0.62	+1.7
200,623	-		GFF5821	0.62	-0.1
200,624	+		GFF5821	0.62	+0.3
200,624	+		GFF5821	0.62	+0.0
200,624	+		GFF5821	0.62	-0.8
200,625	-		GFF5821	0.62	-1.5
200,718	+		GFF5821	0.73	-0.3
200,768	+		GFF5821	0.79	-1.9
200,769	-		GFF5821	0.79	-0.3
200,769	-		GFF5821	0.79	-2.3
200,781	-		GFF5821	0.81	+0.1
200,781	-		GFF5821	0.81	-2.5
200,838	+		GFF5821	0.88	-0.3
200,839	-		GFF5821	0.88	+2.3
200,839	-		GFF5821	0.88	-0.9
200,839	-		GFF5821	0.88	-0.8
200,861	+				-2.1
200,861	+				-1.9
200,862	-				+1.3
200,932	+				-1.9
200,933	-				+0.9
200,938	+				-0.3
200,938	+				+0.7
200,939	-				-0.3
200,939	-				+0.5
200,972	-				-0.8
200,985	-				-2.0
200,985	-				-2.7
200,985	-				+0.3
201,093	+		GFF5822	0.17	+1.2
201,106	+		GFF5822	0.18	+0.4
201,462	+		GFF5822	0.56	-0.9
201,463	-		GFF5822	0.56	+1.0
201,463	-		GFF5822	0.56	-0.0
201,463	-		GFF5822	0.56	-2.3
201,541	+		GFF5822	0.64	+0.2
201,541	+		GFF5822	0.64	+0.9
201,541	+		GFF5822	0.64	+0.2
201,541	+		GFF5822	0.64	-1.1
201,565	+		GFF5822	0.66	-1.4
201,565	+		GFF5822	0.66	+0.4
201,614	+		GFF5822	0.72	+1.2
201,614	+		GFF5822	0.72	-1.3
201,615	-		GFF5822	0.72	+1.4
201,628	+		GFF5822	0.73	-1.8
201,628	+		GFF5822	0.73	+3.6
201,628	+		GFF5822	0.73	-1.9
201,631	+		GFF5822	0.73	+0.8
201,631	+		GFF5822	0.73	-0.2
201,631	+		GFF5822	0.73	-1.4
201,631	+		GFF5822	0.73	-0.1
201,631	+		GFF5822	0.73	+0.2
201,631	+		GFF5822	0.73	-2.1
201,631	+		GFF5822	0.73	-3.3
201,631	+		GFF5822	0.73	+0.1
201,632	-		GFF5822	0.74	-1.1
201,632	-		GFF5822	0.74	-1.4
201,632	-		GFF5822	0.74	-1.1
201,632	-		GFF5822	0.74	+1.1
201,638	+		GFF5822	0.74	+2.1
201,639	-		GFF5822	0.74	-3.3
201,755	-		GFF5822	0.86	+0.4
201,828	+				-0.3
201,828	+				+0.2
201,829	-				-1.4
201,829	-				-0.4
201,921	-				+2.2
201,935	+				+0.4
201,962	-				-0.5
201,962	-				-0.9
202,059	+				-0.5
202,071	+				+1.7
202,153	-				-0.9