Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5781 and GFF5782 are separated by 143 nucleotides GFF5782 and GFF5783 are separated by 1 nucleotides
GFF5781 - Transcriptional regulator, LysR family, at 155,995 to 156,894
GFF5781
GFF5782 - BUG/TctC family periplasmic protein, at 157,038 to 158,072
GFF5782
GFF5783 - hypothetical protein, at 158,074 to 159,402
GFF5783
Position (kb) 157
158
159 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 156.527 kb on + strand, within GFF5781 at 156.527 kb on + strand, within GFF5781 at 156.528 kb on - strand, within GFF5781 at 156.528 kb on - strand, within GFF5781 at 156.528 kb on - strand, within GFF5781 at 156.680 kb on + strand, within GFF5781 at 156.680 kb on + strand, within GFF5781 at 156.681 kb on - strand, within GFF5781 at 156.681 kb on - strand, within GFF5781 at 156.957 kb on + strand at 156.958 kb on - strand at 156.958 kb on - strand at 156.958 kb on - strand at 156.984 kb on - strand at 156.984 kb on - strand at 156.998 kb on - strand at 157.030 kb on + strand at 157.030 kb on + strand at 157.030 kb on + strand at 157.031 kb on - strand at 157.031 kb on - strand at 157.031 kb on - strand at 157.031 kb on - strand at 157.031 kb on - strand at 157.031 kb on - strand at 157.031 kb on - strand at 157.031 kb on - strand at 157.031 kb on - strand at 157.031 kb on - strand at 157.031 kb on - strand at 157.031 kb on - strand at 157.031 kb on - strand at 157.419 kb on + strand, within GFF5782 at 157.419 kb on + strand, within GFF5782 at 157.419 kb on + strand, within GFF5782 at 157.420 kb on - strand, within GFF5782 at 157.420 kb on - strand, within GFF5782 at 157.644 kb on + strand, within GFF5782 at 157.644 kb on + strand, within GFF5782 at 157.644 kb on + strand, within GFF5782 at 157.645 kb on - strand, within GFF5782 at 157.645 kb on - strand, within GFF5782 at 157.645 kb on - strand, within GFF5782 at 157.645 kb on - strand, within GFF5782 at 157.645 kb on - strand, within GFF5782 at 157.645 kb on - strand, within GFF5782 at 157.645 kb on - strand, within GFF5782 at 157.645 kb on - strand, within GFF5782 at 157.645 kb on - strand, within GFF5782 at 158.004 kb on + strand at 158.005 kb on - strand at 158.005 kb on - strand at 158.110 kb on - strand at 158.110 kb on - strand at 158.554 kb on + strand, within GFF5783 at 158.554 kb on + strand, within GFF5783 at 158.554 kb on + strand, within GFF5783 at 158.555 kb on - strand, within GFF5783 at 158.555 kb on - strand, within GFF5783 at 158.555 kb on - strand, within GFF5783 at 158.555 kb on - strand, within GFF5783
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 156,527 + GFF5781 0.59 +1.0 156,527 + GFF5781 0.59 -1.0 156,528 - GFF5781 0.59 -1.3 156,528 - GFF5781 0.59 -0.9 156,528 - GFF5781 0.59 +1.4 156,680 + GFF5781 0.76 -0.9 156,680 + GFF5781 0.76 -2.0 156,681 - GFF5781 0.76 +0.6 156,681 - GFF5781 0.76 -2.7 156,957 + +0.5 156,958 - -0.1 156,958 - -0.3 156,958 - +0.1 156,984 - -0.3 156,984 - -1.4 156,998 - -3.2 157,030 + -0.8 157,030 + -4.2 157,030 + +2.6 157,031 - -0.8 157,031 - -3.3 157,031 - +1.2 157,031 - -0.2 157,031 - -1.0 157,031 - +0.5 157,031 - +2.1 157,031 - +0.5 157,031 - -0.5 157,031 - -0.3 157,031 - -0.7 157,031 - -1.5 157,031 - +2.1 157,419 + GFF5782 0.37 -0.9 157,419 + GFF5782 0.37 +0.7 157,419 + GFF5782 0.37 -1.3 157,420 - GFF5782 0.37 +0.1 157,420 - GFF5782 0.37 -2.6 157,644 + GFF5782 0.59 +0.3 157,644 + GFF5782 0.59 -3.3 157,644 + GFF5782 0.59 -1.2 157,645 - GFF5782 0.59 -2.6 157,645 - GFF5782 0.59 -0.3 157,645 - GFF5782 0.59 -0.6 157,645 - GFF5782 0.59 -2.6 157,645 - GFF5782 0.59 -0.5 157,645 - GFF5782 0.59 -1.3 157,645 - GFF5782 0.59 -2.0 157,645 - GFF5782 0.59 -2.5 157,645 - GFF5782 0.59 -1.7 158,004 + +0.8 158,005 - -1.4 158,005 - +0.3 158,110 - +2.1 158,110 - +1.2 158,554 + GFF5783 0.36 +0.4 158,554 + GFF5783 0.36 -2.8 158,554 + GFF5783 0.36 -0.9 158,555 - GFF5783 0.36 +0.1 158,555 - GFF5783 0.36 -2.2 158,555 - GFF5783 0.36 -2.9 158,555 - GFF5783 0.36 -2.9
Or see this region's nucleotide sequence