Strain Fitness in Variovorax sp. SCN45 around GFF5769

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
140,309	+		GFF5767	0.64	-1.1
140,315	+		GFF5767	0.65	+0.7
140,316	-		GFF5767	0.65	-1.8
140,316	-		GFF5767	0.65	+1.3
140,316	-		GFF5767	0.65	-1.8
140,316	-		GFF5767	0.65	-1.5
140,366	+		GFF5767	0.70	+0.5
140,366	+		GFF5767	0.70	-2.3
140,367	-		GFF5767	0.70	+1.6
140,448	-		GFF5767	0.77	-0.5
140,650	-				-2.5
140,720	+				+0.9
141,298	+		GFF5769	0.27	-0.3
141,299	-		GFF5769	0.27	+0.7
141,479	-		GFF5769	0.55	-1.1
141,766	+				-1.9
141,833	-				-1.1
141,887	+				+0.1
141,888	-				+2.1
141,888	-				+1.1
141,888	-				-1.5
142,456	+		GFF5770	0.47	-0.9
142,456	+		GFF5770	0.47	+1.0
142,457	-		GFF5770	0.47	+0.7
142,457	-		GFF5770	0.47	+1.4
142,561	+		GFF5770	0.56	+2.1
142,562	-		GFF5770	0.56	+0.8
142,562	-		GFF5770	0.56	-0.8
142,750	+		GFF5770	0.72	+0.3
142,750	+		GFF5770	0.72	+0.1
142,751	-		GFF5770	0.72	-2.4