Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF565 and GFF566 overlap by 4 nucleotides GFF566 and GFF567 overlap by 7 nucleotides GFF567 and GFF568 are separated by 223 nucleotides
GFF565 - Prepilin-type cleavage/methylation-like protein, at 612,456 to 613,271
GFF565
GFF566 - Type IV fimbrial biogenesis protein PilV, at 613,268 to 613,825
GFF566
GFF567 - KEGG: type IV fimbrial biogenesis protein FimT, at 613,819 to 614,346
GFF567
GFF568 - Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193), at 614,570 to 615,667
GFF568
Position (kb) 613
614
615 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 612.844 kb on + strand, within GFF565 at 612.844 kb on + strand, within GFF565 at 612.844 kb on + strand, within GFF565 at 612.844 kb on + strand, within GFF565 at 612.844 kb on + strand, within GFF565 at 612.844 kb on + strand, within GFF565 at 612.844 kb on + strand, within GFF565 at 612.844 kb on + strand, within GFF565 at 612.844 kb on + strand, within GFF565 at 612.844 kb on + strand, within GFF565 at 612.844 kb on + strand, within GFF565 at 612.844 kb on + strand, within GFF565 at 612.844 kb on + strand, within GFF565 at 612.844 kb on + strand, within GFF565 at 612.845 kb on - strand, within GFF565 at 612.845 kb on - strand, within GFF565 at 612.845 kb on - strand, within GFF565 at 612.845 kb on - strand, within GFF565 at 612.845 kb on - strand, within GFF565 at 612.845 kb on - strand, within GFF565 at 612.845 kb on - strand, within GFF565 at 612.845 kb on - strand, within GFF565 at 612.845 kb on - strand, within GFF565 at 612.845 kb on - strand, within GFF565 at 612.845 kb on - strand, within GFF565 at 612.845 kb on - strand, within GFF565 at 612.845 kb on - strand, within GFF565 at 612.845 kb on - strand, within GFF565 at 612.845 kb on - strand, within GFF565 at 612.845 kb on - strand, within GFF565 at 612.886 kb on + strand, within GFF565 at 612.886 kb on + strand, within GFF565 at 612.886 kb on + strand, within GFF565 at 612.886 kb on + strand, within GFF565 at 612.887 kb on - strand, within GFF565 at 612.887 kb on - strand, within GFF565 at 612.887 kb on - strand, within GFF565 at 612.887 kb on - strand, within GFF565 at 612.887 kb on - strand, within GFF565 at 612.904 kb on + strand, within GFF565 at 612.905 kb on - strand, within GFF565 at 612.905 kb on - strand, within GFF565 at 612.905 kb on - strand, within GFF565 at 612.905 kb on - strand, within GFF565 at 613.018 kb on + strand, within GFF565 at 613.018 kb on + strand, within GFF565 at 613.018 kb on + strand, within GFF565 at 613.018 kb on + strand, within GFF565 at 613.018 kb on + strand, within GFF565 at 613.018 kb on + strand, within GFF565 at 613.019 kb on - strand, within GFF565 at 613.019 kb on - strand, within GFF565 at 613.019 kb on - strand, within GFF565 at 613.019 kb on - strand, within GFF565 at 613.019 kb on - strand, within GFF565 at 613.019 kb on - strand, within GFF565 at 613.019 kb on - strand, within GFF565 at 613.019 kb on - strand, within GFF565 at 613.019 kb on - strand, within GFF565 at 613.019 kb on - strand, within GFF565 at 613.019 kb on - strand, within GFF565 at 613.019 kb on - strand, within GFF565 at 613.021 kb on + strand, within GFF565 at 613.022 kb on - strand, within GFF565 at 613.022 kb on - strand, within GFF565 at 613.022 kb on - strand, within GFF565 at 613.022 kb on - strand, within GFF565 at 613.022 kb on - strand, within GFF565 at 613.022 kb on - strand, within GFF565 at 613.048 kb on - strand, within GFF565 at 613.049 kb on + strand, within GFF565 at 613.049 kb on + strand, within GFF565 at 613.049 kb on + strand, within GFF565 at 613.049 kb on + strand, within GFF565 at 613.050 kb on - strand, within GFF565 at 613.051 kb on + strand, within GFF565 at 613.051 kb on + strand, within GFF565 at 613.051 kb on + strand, within GFF565 at 613.051 kb on + strand, within GFF565 at 613.051 kb on + strand, within GFF565 at 613.051 kb on + strand, within GFF565 at 613.051 kb on + strand, within GFF565 at 613.051 kb on + strand, within GFF565 at 613.051 kb on + strand, within GFF565 at 613.051 kb on + strand, within GFF565 at 613.051 kb on + strand, within GFF565 at 613.051 kb on + strand, within GFF565 at 613.051 kb on + strand, within GFF565 at 613.052 kb on - strand, within GFF565 at 613.052 kb on - strand, within GFF565 at 613.052 kb on - strand, within GFF565 at 613.052 kb on - strand, within GFF565 at 613.052 kb on - strand, within GFF565 at 613.052 kb on - strand, within GFF565 at 613.052 kb on - strand, within GFF565 at 613.052 kb on - strand, within GFF565 at 613.052 kb on - strand, within GFF565 at 613.052 kb on - strand, within GFF565 at 613.052 kb on - strand, within GFF565 at 613.052 kb on - strand, within GFF565 at 613.052 kb on - strand, within GFF565 at 613.052 kb on - strand, within GFF565 at 613.052 kb on - strand, within GFF565 at 613.052 kb on - strand, within GFF565 at 613.418 kb on + strand, within GFF566 at 613.418 kb on + strand, within GFF566 at 613.418 kb on + strand, within GFF566 at 613.418 kb on + strand, within GFF566 at 613.418 kb on + strand, within GFF566 at 613.418 kb on + strand, within GFF566 at 613.418 kb on + strand, within GFF566 at 613.418 kb on + strand, within GFF566 at 613.418 kb on + strand, within GFF566 at 613.418 kb on + strand, within GFF566 at 613.418 kb on + strand, within GFF566 at 613.418 kb on + strand, within GFF566 at 613.419 kb on - strand, within GFF566 at 613.419 kb on - strand, within GFF566 at 613.419 kb on - strand, within GFF566 at 613.419 kb on - strand, within GFF566 at 613.419 kb on - strand, within GFF566 at 613.419 kb on - strand, within GFF566 at 613.419 kb on - strand, within GFF566 at 613.419 kb on - strand, within GFF566 at 613.419 kb on - strand, within GFF566 at 613.419 kb on - strand, within GFF566 at 613.419 kb on - strand, within GFF566 at 613.419 kb on - strand, within GFF566 at 613.419 kb on - strand, within GFF566 at 613.419 kb on - strand, within GFF566 at 613.479 kb on + strand, within GFF566 at 613.479 kb on + strand, within GFF566 at 613.479 kb on + strand, within GFF566 at 613.480 kb on - strand, within GFF566 at 613.480 kb on - strand, within GFF566 at 613.480 kb on - strand, within GFF566 at 613.480 kb on - strand, within GFF566 at 613.480 kb on - strand, within GFF566 at 613.480 kb on - strand, within GFF566 at 613.480 kb on - strand, within GFF566 at 613.480 kb on - strand, within GFF566 at 613.572 kb on + strand, within GFF566 at 613.572 kb on + strand, within GFF566 at 613.572 kb on + strand, within GFF566 at 613.572 kb on + strand, within GFF566 at 613.572 kb on + strand, within GFF566 at 613.573 kb on - strand, within GFF566 at 613.573 kb on - strand, within GFF566 at 613.573 kb on - strand, within GFF566 at 613.573 kb on - strand, within GFF566 at 613.573 kb on - strand, within GFF566 at 613.573 kb on - strand, within GFF566 at 613.573 kb on - strand, within GFF566 at 613.573 kb on - strand, within GFF566 at 613.804 kb on + strand at 613.804 kb on + strand at 613.804 kb on + strand at 613.804 kb on + strand at 613.805 kb on - strand at 613.805 kb on - strand at 613.805 kb on - strand at 613.913 kb on + strand, within GFF567 at 613.913 kb on + strand, within GFF567 at 613.914 kb on - strand, within GFF567 at 613.914 kb on - strand, within GFF567 at 613.914 kb on - strand, within GFF567 at 613.914 kb on - strand, within GFF567 at 613.914 kb on - strand, within GFF567 at 613.914 kb on - strand, within GFF567 at 613.914 kb on - strand, within GFF567 at 613.914 kb on - strand, within GFF567 at 614.192 kb on + strand, within GFF567 at 614.192 kb on + strand, within GFF567 at 614.193 kb on - strand, within GFF567 at 614.239 kb on + strand, within GFF567 at 614.239 kb on + strand, within GFF567 at 614.239 kb on + strand, within GFF567 at 614.239 kb on + strand, within GFF567 at 614.239 kb on + strand, within GFF567 at 614.239 kb on + strand, within GFF567 at 614.239 kb on + strand, within GFF567 at 614.239 kb on + strand, within GFF567 at 614.239 kb on + strand, within GFF567 at 614.239 kb on + strand, within GFF567 at 614.239 kb on + strand, within GFF567 at 614.239 kb on + strand, within GFF567 at 614.239 kb on + strand, within GFF567 at 614.239 kb on + strand, within GFF567 at 614.239 kb on + strand, within GFF567 at 614.239 kb on + strand, within GFF567 at 614.240 kb on - strand, within GFF567 at 614.240 kb on - strand, within GFF567 at 614.240 kb on - strand, within GFF567 at 614.240 kb on - strand, within GFF567 at 614.240 kb on - strand, within GFF567 at 614.240 kb on - strand, within GFF567 at 614.240 kb on - strand, within GFF567 at 614.240 kb on - strand, within GFF567 at 614.240 kb on - strand, within GFF567 at 614.240 kb on - strand, within GFF567 at 614.240 kb on - strand, within GFF567 at 614.240 kb on - strand, within GFF567 at 614.312 kb on + strand at 614.312 kb on + strand at 614.312 kb on + strand at 614.312 kb on + strand at 614.312 kb on + strand at 614.312 kb on + strand at 614.312 kb on + strand at 614.312 kb on + strand at 614.312 kb on + strand at 614.312 kb on + strand at 614.312 kb on + strand at 614.313 kb on - strand at 614.313 kb on - strand at 614.313 kb on - strand at 614.313 kb on - strand at 614.313 kb on - strand at 614.313 kb on - strand at 614.313 kb on - strand at 614.313 kb on - strand at 614.313 kb on - strand at 614.313 kb on - strand at 614.313 kb on - strand at 614.313 kb on - strand at 614.313 kb on - strand at 614.313 kb on - strand at 614.351 kb on + strand at 614.351 kb on + strand at 614.351 kb on + strand at 614.351 kb on + strand at 614.351 kb on + strand at 614.351 kb on + strand at 614.351 kb on + strand at 614.351 kb on + strand at 614.351 kb on + strand at 614.351 kb on + strand at 614.352 kb on - strand at 614.352 kb on - strand at 614.352 kb on - strand at 614.352 kb on - strand at 614.352 kb on - strand at 614.352 kb on - strand at 614.352 kb on - strand at 614.352 kb on - strand at 614.352 kb on - strand at 614.352 kb on - strand at 614.352 kb on - strand at 614.352 kb on - strand at 614.352 kb on - strand at 614.352 kb on - strand at 614.352 kb on - strand at 614.352 kb on - strand at 614.352 kb on - strand at 614.352 kb on - strand at 614.352 kb on - strand at 614.539 kb on + strand at 614.543 kb on + strand at 614.543 kb on + strand at 614.543 kb on + strand at 614.544 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 612,844 + GFF565 0.48 -3.0 612,844 + GFF565 0.48 +0.1 612,844 + GFF565 0.48 +2.6 612,844 + GFF565 0.48 +0.1 612,844 + GFF565 0.48 -1.2 612,844 + GFF565 0.48 -1.0 612,844 + GFF565 0.48 +2.5 612,844 + GFF565 0.48 +0.9 612,844 + GFF565 0.48 -2.7 612,844 + GFF565 0.48 +0.0 612,844 + GFF565 0.48 +1.0 612,844 + GFF565 0.48 -0.3 612,844 + GFF565 0.48 -1.2 612,844 + GFF565 0.48 +0.7 612,845 - GFF565 0.48 -0.4 612,845 - GFF565 0.48 +2.3 612,845 - GFF565 0.48 -0.2 612,845 - GFF565 0.48 +1.9 612,845 - GFF565 0.48 -1.4 612,845 - GFF565 0.48 -1.2 612,845 - GFF565 0.48 -0.3 612,845 - GFF565 0.48 +1.6 612,845 - GFF565 0.48 +0.3 612,845 - GFF565 0.48 -1.6 612,845 - GFF565 0.48 -2.8 612,845 - GFF565 0.48 +0.0 612,845 - GFF565 0.48 -0.4 612,845 - GFF565 0.48 +0.4 612,845 - GFF565 0.48 -2.3 612,845 - GFF565 0.48 -0.7 612,886 + GFF565 0.53 +0.9 612,886 + GFF565 0.53 +0.0 612,886 + GFF565 0.53 -1.9 612,886 + GFF565 0.53 +0.0 612,887 - GFF565 0.53 +0.2 612,887 - GFF565 0.53 -0.7 612,887 - GFF565 0.53 -1.6 612,887 - GFF565 0.53 -1.6 612,887 - GFF565 0.53 -0.6 612,904 + GFF565 0.55 -3.1 612,905 - GFF565 0.55 +0.3 612,905 - GFF565 0.55 -1.6 612,905 - GFF565 0.55 -0.9 612,905 - GFF565 0.55 -1.2 613,018 + GFF565 0.69 +0.4 613,018 + GFF565 0.69 +0.9 613,018 + GFF565 0.69 -2.3 613,018 + GFF565 0.69 +0.0 613,018 + GFF565 0.69 -2.5 613,018 + GFF565 0.69 +0.5 613,019 - GFF565 0.69 -0.1 613,019 - GFF565 0.69 -1.1 613,019 - GFF565 0.69 -1.6 613,019 - GFF565 0.69 -1.4 613,019 - GFF565 0.69 -2.7 613,019 - GFF565 0.69 +0.9 613,019 - GFF565 0.69 +3.7 613,019 - GFF565 0.69 -2.9 613,019 - GFF565 0.69 -1.4 613,019 - GFF565 0.69 +0.0 613,019 - GFF565 0.69 +0.8 613,019 - GFF565 0.69 -1.7 613,021 + GFF565 0.69 -0.5 613,022 - GFF565 0.69 +0.6 613,022 - GFF565 0.69 -2.0 613,022 - GFF565 0.69 -0.4 613,022 - GFF565 0.69 -2.7 613,022 - GFF565 0.69 -0.9 613,022 - GFF565 0.69 -0.6 613,048 - GFF565 0.73 -0.2 613,049 + GFF565 0.73 +2.2 613,049 + GFF565 0.73 +0.6 613,049 + GFF565 0.73 +1.2 613,049 + GFF565 0.73 -2.3 613,050 - GFF565 0.73 -2.5 613,051 + GFF565 0.73 -1.7 613,051 + GFF565 0.73 +0.2 613,051 + GFF565 0.73 +0.2 613,051 + GFF565 0.73 -0.6 613,051 + GFF565 0.73 -1.5 613,051 + GFF565 0.73 -1.0 613,051 + GFF565 0.73 +2.0 613,051 + GFF565 0.73 -1.3 613,051 + GFF565 0.73 +0.5 613,051 + GFF565 0.73 +0.0 613,051 + GFF565 0.73 -0.7 613,051 + GFF565 0.73 +0.5 613,051 + GFF565 0.73 -0.8 613,052 - GFF565 0.73 -0.6 613,052 - GFF565 0.73 -2.4 613,052 - GFF565 0.73 -0.2 613,052 - GFF565 0.73 -0.5 613,052 - GFF565 0.73 -1.1 613,052 - GFF565 0.73 +0.0 613,052 - GFF565 0.73 -1.0 613,052 - GFF565 0.73 -1.1 613,052 - GFF565 0.73 +1.2 613,052 - GFF565 0.73 -0.3 613,052 - GFF565 0.73 -3.6 613,052 - GFF565 0.73 -0.4 613,052 - GFF565 0.73 -0.3 613,052 - GFF565 0.73 +1.0 613,052 - GFF565 0.73 +1.3 613,052 - GFF565 0.73 +1.5 613,418 + GFF566 0.27 -3.3 613,418 + GFF566 0.27 +0.6 613,418 + GFF566 0.27 +0.6 613,418 + GFF566 0.27 -1.0 613,418 + GFF566 0.27 +0.6 613,418 + GFF566 0.27 -2.2 613,418 + GFF566 0.27 -1.6 613,418 + GFF566 0.27 +0.4 613,418 + GFF566 0.27 -1.7 613,418 + GFF566 0.27 -0.3 613,418 + GFF566 0.27 -0.5 613,418 + GFF566 0.27 -0.8 613,419 - GFF566 0.27 +0.6 613,419 - GFF566 0.27 -3.8 613,419 - GFF566 0.27 -0.6 613,419 - GFF566 0.27 +1.2 613,419 - GFF566 0.27 +1.1 613,419 - GFF566 0.27 -0.6 613,419 - GFF566 0.27 +0.6 613,419 - GFF566 0.27 -2.7 613,419 - GFF566 0.27 -1.8 613,419 - GFF566 0.27 -1.9 613,419 - GFF566 0.27 +0.2 613,419 - GFF566 0.27 -1.2 613,419 - GFF566 0.27 +1.1 613,419 - GFF566 0.27 -1.6 613,479 + GFF566 0.38 +1.9 613,479 + GFF566 0.38 +0.5 613,479 + GFF566 0.38 +3.6 613,480 - GFF566 0.38 -0.4 613,480 - GFF566 0.38 -1.6 613,480 - GFF566 0.38 -0.7 613,480 - GFF566 0.38 -2.6 613,480 - GFF566 0.38 -1.4 613,480 - GFF566 0.38 -1.2 613,480 - GFF566 0.38 -1.5 613,480 - GFF566 0.38 +1.0 613,572 + GFF566 0.54 +1.7 613,572 + GFF566 0.54 -0.2 613,572 + GFF566 0.54 -1.3 613,572 + GFF566 0.54 +0.1 613,572 + GFF566 0.54 +0.8 613,573 - GFF566 0.55 -2.1 613,573 - GFF566 0.55 -1.0 613,573 - GFF566 0.55 +0.7 613,573 - GFF566 0.55 -0.4 613,573 - GFF566 0.55 -0.4 613,573 - GFF566 0.55 -2.2 613,573 - GFF566 0.55 -1.8 613,573 - GFF566 0.55 -0.8 613,804 + -0.9 613,804 + +0.7 613,804 + +0.6 613,804 + -0.7 613,805 - +1.4 613,805 - +0.1 613,805 - -2.9 613,913 + GFF567 0.18 +0.9 613,913 + GFF567 0.18 +1.0 613,914 - GFF567 0.18 -1.3 613,914 - GFF567 0.18 +0.9 613,914 - GFF567 0.18 -1.2 613,914 - GFF567 0.18 +0.4 613,914 - GFF567 0.18 +0.2 613,914 - GFF567 0.18 -1.2 613,914 - GFF567 0.18 -0.3 613,914 - GFF567 0.18 -1.0 614,192 + GFF567 0.71 +0.0 614,192 + GFF567 0.71 -0.7 614,193 - GFF567 0.71 -2.4 614,239 + GFF567 0.80 -2.2 614,239 + GFF567 0.80 -0.4 614,239 + GFF567 0.80 +1.8 614,239 + GFF567 0.80 -1.2 614,239 + GFF567 0.80 -1.2 614,239 + GFF567 0.80 -1.9 614,239 + GFF567 0.80 +0.4 614,239 + GFF567 0.80 +2.1 614,239 + GFF567 0.80 +0.5 614,239 + GFF567 0.80 +0.5 614,239 + GFF567 0.80 -1.2 614,239 + GFF567 0.80 -3.2 614,239 + GFF567 0.80 +0.1 614,239 + GFF567 0.80 -0.7 614,239 + GFF567 0.80 +1.7 614,239 + GFF567 0.80 -2.7 614,240 - GFF567 0.80 -3.9 614,240 - GFF567 0.80 -0.4 614,240 - GFF567 0.80 -0.3 614,240 - GFF567 0.80 +0.6 614,240 - GFF567 0.80 +0.9 614,240 - GFF567 0.80 -1.0 614,240 - GFF567 0.80 +1.9 614,240 - GFF567 0.80 +1.2 614,240 - GFF567 0.80 +1.3 614,240 - GFF567 0.80 +0.3 614,240 - GFF567 0.80 -0.2 614,240 - GFF567 0.80 -0.2 614,312 + +1.0 614,312 + +0.0 614,312 + -1.5 614,312 + +1.6 614,312 + -3.5 614,312 + -3.9 614,312 + -2.4 614,312 + -2.5 614,312 + -1.7 614,312 + -1.4 614,312 + +1.1 614,313 - +0.6 614,313 - -0.0 614,313 - +0.3 614,313 - -0.5 614,313 - +1.0 614,313 - -0.6 614,313 - -1.9 614,313 - -0.4 614,313 - +1.6 614,313 - +1.2 614,313 - -1.7 614,313 - +0.2 614,313 - -0.2 614,313 - +0.2 614,351 + +0.6 614,351 + -1.4 614,351 + -3.3 614,351 + +0.0 614,351 + -2.7 614,351 + +0.2 614,351 + -2.7 614,351 + -1.1 614,351 + -3.8 614,351 + -2.6 614,352 - +2.0 614,352 - -0.5 614,352 - -2.6 614,352 - -0.9 614,352 - -2.4 614,352 - +1.1 614,352 - -1.1 614,352 - +0.7 614,352 - +0.5 614,352 - -1.4 614,352 - +1.5 614,352 - +0.1 614,352 - -0.1 614,352 - -1.1 614,352 - +2.3 614,352 - -1.2 614,352 - -2.3 614,352 - +1.6 614,352 - -0.3 614,539 + +0.0 614,543 + +0.6 614,543 + +0.0 614,543 + -1.0 614,544 - +1.1
Or see this region's nucleotide sequence