Strain Fitness in Variovorax sp. SCN45 around GFF5632

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
9,083	+		GFF5630	0.23	+0.1
9,083	+		GFF5630	0.23	-2.0
9,084	-		GFF5630	0.23	-2.2
9,084	-		GFF5630	0.23	+1.1
9,176	+		GFF5630	0.39	-1.5
9,176	+		GFF5630	0.39	-1.3
9,176	+		GFF5630	0.39	+1.1
9,176	+		GFF5630	0.39	+0.7
9,176	+		GFF5630	0.39	+0.1
9,177	-		GFF5630	0.39	-1.5
9,177	-		GFF5630	0.39	-0.6
9,177	-		GFF5630	0.39	-2.1
9,177	-		GFF5630	0.39	-2.5
9,177	-		GFF5630	0.39	+0.1
9,177	-		GFF5630	0.39	-0.1
9,177	-		GFF5630	0.39	+3.6
9,177	-		GFF5630	0.39	-0.9
9,177	-		GFF5630	0.39	-1.1
9,177	-		GFF5630	0.39	-1.9
9,177	-		GFF5630	0.39	-1.8
9,266	+		GFF5630	0.55	-1.3
9,266	+		GFF5630	0.55	-1.5
9,266	+		GFF5630	0.55	-1.9
9,266	+		GFF5630	0.55	+1.7
9,266	+		GFF5630	0.55	+0.1
9,266	+		GFF5630	0.55	-1.6
9,266	+		GFF5630	0.55	-0.6
9,266	+		GFF5630	0.55	-1.3
9,266	+		GFF5630	0.55	-3.0
9,266	+		GFF5630	0.55	-0.6
9,267	-		GFF5630	0.55	+0.3
9,267	-		GFF5630	0.55	-0.3
9,267	-		GFF5630	0.55	+0.1
9,267	-		GFF5630	0.55	+1.6
9,267	-		GFF5630	0.55	+0.1
9,267	-		GFF5630	0.55	-1.8
9,267	-		GFF5630	0.55	+0.5
9,267	-		GFF5630	0.55	-0.5
9,267	-		GFF5630	0.55	-0.4
9,563	+				-0.2
9,563	+				+0.5
9,564	-				-1.3
9,564	-				-2.6
9,564	-				+0.7
9,564	-				-2.2
9,625	+				-0.5
9,625	+				+1.5
9,626	-				-0.9
9,626	-				+0.1
9,674	+				-0.8
9,675	-				-0.7
9,779	+		GFF5631	0.40	+0.1
9,779	+		GFF5631	0.40	-0.7
9,780	-		GFF5631	0.40	+1.1
10,159	+		GFF5632	0.35	-1.2
10,159	+		GFF5632	0.35	+0.1
10,159	+		GFF5632	0.35	+1.4
10,159	+		GFF5632	0.35	-0.5
10,160	-		GFF5632	0.35	-3.5
10,160	-		GFF5632	0.35	-0.9
10,160	-		GFF5632	0.35	-3.7
10,160	-		GFF5632	0.35	+2.1
10,381	+		GFF5632	0.80	+2.3
10,381	+		GFF5632	0.80	-1.9
10,381	+		GFF5632	0.80	+1.5
10,381	+		GFF5632	0.80	+2.2
10,381	+		GFF5632	0.80	-1.9
10,381	+		GFF5632	0.80	-0.7
10,381	+		GFF5632	0.80	+0.8
10,381	+		GFF5632	0.80	+0.2
10,381	+		GFF5632	0.80	+0.5
10,382	-		GFF5632	0.80	-1.7
10,382	-		GFF5632	0.80	+1.9
10,382	-		GFF5632	0.80	-1.5
10,382	-		GFF5632	0.80	-0.3
10,382	-		GFF5632	0.80	+0.3
10,382	-		GFF5632	0.80	-0.3
10,382	-		GFF5632	0.80	-0.5
10,382	-		GFF5632	0.80	-1.9
10,621	+		GFF5633	0.26	+0.1
11,142	+		GFF5634	0.12	+0.6
11,142	+		GFF5634	0.12	-1.4
11,143	-		GFF5634	0.13	-1.4
11,143	-		GFF5634	0.13	+1.1
11,143	-		GFF5634	0.13	-1.4
11,143	-		GFF5634	0.13	+0.1
11,143	-		GFF5634	0.13	+0.6
11,143	-		GFF5634	0.13	+0.8
11,162	+		GFF5634	0.24	+0.5
11,162	+		GFF5634	0.24	+1.5
11,162	+		GFF5634	0.24	-0.5
11,163	-		GFF5634	0.24	+1.3
11,163	-		GFF5634	0.24	-1.4
11,163	-		GFF5634	0.24	-1.5
11,381	+				+1.4
11,381	+				+0.4
11,381	+				-3.5
11,381	+				-2.2
11,381	+				-1.3
11,381	+				-1.7
11,382	-				+0.1
11,382	-				+1.2
11,382	-				-1.1
11,382	-				-0.2
11,382	-				+1.6
11,382	-				-1.1
11,382	-				+1.0
11,382	-				-1.9
11,383	+				+0.3
11,393	+				-0.4
11,393	+				+2.3
11,393	+				-2.9
11,393	+				-2.5
11,393	+				-1.4
11,393	+				-2.6
11,393	+				+1.5
11,393	+				+1.3
11,393	+				+0.4
11,393	+				+2.1
11,394	-				+0.3
11,394	-				-1.8
11,395	+				-1.7
11,395	+				+0.4
11,395	+				+2.7
11,395	+				+3.3
11,395	+				+0.7
11,395	+				+0.1
11,395	+				+1.4
11,395	+				-2.6
11,396	-				-2.1
11,396	-				-0.4
11,396	-				-0.5
11,396	-				-0.2
11,396	-				+0.2
11,434	+				+0.8
11,434	+				-2.5
11,435	-				-2.7
11,448	+				-0.2
11,448	+				+0.5
11,449	-				-1.6
11,449	-				+0.2
11,449	-				+0.5
11,449	-				+0.5
11,449	-				+1.1
11,464	-				+0.5
11,464	-				+0.1