Strain Fitness in Variovorax sp. SCN45 around GFF5622

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5622 and GFF5623 are separated by 85 nucleotides GFF5622 - Transcriptional regulator, AsnC family, at 74 to 544 GFF5622 GFF5623 - Metal-dependent amidase/aminoacylase/carboxypeptidase, at 630 to 1,817 GFF5623 Position (kb) 0 1Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 0.075 kb on + strandat 0.075 kb on + strandat 0.075 kb on + strandat 0.075 kb on + strandat 0.075 kb on + strandat 0.075 kb on + strandat 0.075 kb on + strandat 0.075 kb on + strandat 0.075 kb on + strandat 0.075 kb on + strandat 0.075 kb on + strandat 0.075 kb on + strandat 0.075 kb on + strandat 0.189 kb on + strand, within GFF5622at 0.189 kb on + strand, within GFF5622at 0.189 kb on + strand, within GFF5622at 0.189 kb on + strand, within GFF5622at 0.189 kb on + strand, within GFF5622at 0.190 kb on - strand, within GFF5622at 0.190 kb on - strand, within GFF5622at 0.190 kb on - strand, within GFF5622at 0.190 kb on - strand, within GFF5622at 0.246 kb on + strand, within GFF5622at 0.246 kb on + strand, within GFF5622at 0.246 kb on + strand, within GFF5622at 0.246 kb on + strand, within GFF5622at 0.246 kb on + strand, within GFF5622at 0.246 kb on + strand, within GFF5622at 0.246 kb on + strand, within GFF5622at 0.246 kb on + strand, within GFF5622at 0.247 kb on - strand, within GFF5622at 0.247 kb on - strand, within GFF5622at 0.247 kb on - strand, within GFF5622at 0.247 kb on - strand, within GFF5622at 0.247 kb on - strand, within GFF5622at 0.247 kb on - strand, within GFF5622at 0.247 kb on - strand, within GFF5622at 0.247 kb on - strand, within GFF5622at 0.247 kb on - strand, within GFF5622at 0.247 kb on - strand, within GFF5622at 0.247 kb on - strand, within GFF5622at 0.247 kb on - strand, within GFF5622at 0.247 kb on - strand, within GFF5622at 0.249 kb on + strand, within GFF5622at 0.249 kb on + strand, within GFF5622at 0.249 kb on + strand, within GFF5622at 0.249 kb on + strand, within GFF5622at 0.249 kb on + strand, within GFF5622at 0.249 kb on + strand, within GFF5622at 0.250 kb on - strand, within GFF5622at 0.250 kb on - strand, within GFF5622at 0.250 kb on - strand, within GFF5622at 0.250 kb on - strand, within GFF5622at 0.250 kb on - strand, within GFF5622at 0.250 kb on - strand, within GFF5622at 0.250 kb on - strand, within GFF5622at 0.250 kb on - strand, within GFF5622at 0.387 kb on + strand, within GFF5622at 0.602 kb on - strandat 0.618 kb on + strandat 0.618 kb on + strandat 0.618 kb on + strandat 0.619 kb on - strandat 0.619 kb on - strandat 0.619 kb on - strandat 0.619 kb on - strandat 0.619 kb on - strandat 0.619 kb on - strandat 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.944 kb on + strand, within GFF5623at 0.945 kb on - strand, within GFF5623at 0.945 kb on - strand, within GFF5623at 0.945 kb on - strand, within GFF5623at 0.945 kb on - strand, within GFF5623at 0.945 kb on - strand, within GFF5623at 0.945 kb on - strand, within GFF5623at 0.945 kb on - strand, within GFF5623at 0.945 kb on - strand, within GFF5623at 0.945 kb on - strand, within GFF5623at 0.945 kb on - strand, within GFF5623at 0.945 kb on - strand, within GFF5623at 0.945 kb on - strand, within GFF5623at 1.101 kb on + strand, within GFF5623at 1.101 kb on + strand, within GFF5623at 1.101 kb on + strand, within GFF5623at 1.102 kb on - strand, within GFF5623at 1.102 kb on - strand, within GFF5623at 1.102 kb on - strand, within GFF5623at 1.102 kb on - strand, within GFF5623at 1.102 kb on - strand, within GFF5623at 1.102 kb on - strand, within GFF5623at 1.404 kb on + strand, within GFF5623at 1.404 kb on + strand, within GFF5623at 1.404 kb on + strand, within GFF5623at 1.404 kb on + strand, within GFF5623at 1.405 kb on - strand, within GFF5623at 1.405 kb on - strand, within GFF5623at 1.497 kb on + strand, within GFF5623at 1.497 kb on + strand, within GFF5623at 1.497 kb on + strand, within GFF5623at 1.497 kb on + strand, within GFF5623at 1.497 kb on + strand, within GFF5623at 1.498 kb on - strand, within GFF5623at 1.498 kb on - strand, within GFF5623at 1.498 kb on - strand, within GFF5623at 1.498 kb on - strand, within GFF5623at 1.498 kb on - strand, within GFF5623at 1.498 kb on - strand, within GFF5623at 1.498 kb on - strand, within GFF5623

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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75 + +0.9
75 + +0.6
75 + -2.5
75 + -0.8
75 + +0.4
75 + +0.2
75 + -4.4
75 + -0.5
75 + +0.5
75 + -0.4
75 + +1.2
75 + -2.3
75 + -0.6
189 + GFF5622 0.24 -2.0
189 + GFF5622 0.24 +2.5
189 + GFF5622 0.24 -2.6
189 + GFF5622 0.24 +0.0
189 + GFF5622 0.24 -0.4
190 - GFF5622 0.25 +0.3
190 - GFF5622 0.25 +0.4
190 - GFF5622 0.25 -0.3
190 - GFF5622 0.25 +2.1
246 + GFF5622 0.37 -0.8
246 + GFF5622 0.37 +0.1
246 + GFF5622 0.37 -1.8
246 + GFF5622 0.37 -1.6
246 + GFF5622 0.37 -1.3
246 + GFF5622 0.37 +1.1
246 + GFF5622 0.37 +0.1
246 + GFF5622 0.37 +0.4
247 - GFF5622 0.37 -1.5
247 - GFF5622 0.37 +0.0
247 - GFF5622 0.37 -2.1
247 - GFF5622 0.37 -0.2
247 - GFF5622 0.37 -1.7
247 - GFF5622 0.37 +1.3
247 - GFF5622 0.37 -0.9
247 - GFF5622 0.37 +1.0
247 - GFF5622 0.37 -1.1
247 - GFF5622 0.37 -1.3
247 - GFF5622 0.37 -1.8
247 - GFF5622 0.37 +0.1
247 - GFF5622 0.37 -0.6
249 + GFF5622 0.37 +0.2
249 + GFF5622 0.37 -0.3
249 + GFF5622 0.37 -2.1
249 + GFF5622 0.37 +1.6
249 + GFF5622 0.37 -0.7
249 + GFF5622 0.37 -3.3
250 - GFF5622 0.37 -0.3
250 - GFF5622 0.37 -0.1
250 - GFF5622 0.37 -0.5
250 - GFF5622 0.37 -1.1
250 - GFF5622 0.37 -0.8
250 - GFF5622 0.37 +0.2
250 - GFF5622 0.37 -0.1
250 - GFF5622 0.37 +2.4
387 + GFF5622 0.66 +0.2
602 - +0.4
618 + -2.3
618 + -0.0
618 + -3.5
619 - -1.3
619 - +0.2
619 - +1.3
619 - -1.8
619 - -2.1
619 - -0.3
944 + GFF5623 0.26 +0.1
944 + GFF5623 0.26 -0.8
944 + GFF5623 0.26 +1.5
944 + GFF5623 0.26 +0.4
944 + GFF5623 0.26 +3.4
944 + GFF5623 0.26 -0.3
944 + GFF5623 0.26 +3.1
944 + GFF5623 0.26 -1.6
944 + GFF5623 0.26 +0.3
944 + GFF5623 0.26 -0.0
944 + GFF5623 0.26 -1.1
944 + GFF5623 0.26 +0.2
944 + GFF5623 0.26 -2.5
944 + GFF5623 0.26 -0.8
944 + GFF5623 0.26 +1.1
944 + GFF5623 0.26 -1.6
944 + GFF5623 0.26 -0.2
944 + GFF5623 0.26 -1.4
944 + GFF5623 0.26 -0.5
944 + GFF5623 0.26 -1.9
945 - GFF5623 0.27 +0.2
945 - GFF5623 0.27 -2.0
945 - GFF5623 0.27 -2.0
945 - GFF5623 0.27 +0.4
945 - GFF5623 0.27 -3.5
945 - GFF5623 0.27 +0.2
945 - GFF5623 0.27 -3.0
945 - GFF5623 0.27 -0.2
945 - GFF5623 0.27 -1.8
945 - GFF5623 0.27 +2.1
945 - GFF5623 0.27 -0.5
945 - GFF5623 0.27 -0.9
1,101 + GFF5623 0.40 +0.1
1,101 + GFF5623 0.40 -0.5
1,101 + GFF5623 0.40 +1.3
1,102 - GFF5623 0.40 +0.1
1,102 - GFF5623 0.40 -2.7
1,102 - GFF5623 0.40 -0.9
1,102 - GFF5623 0.40 +1.6
1,102 - GFF5623 0.40 -3.7
1,102 - GFF5623 0.40 +0.1
1,404 + GFF5623 0.65 -0.1
1,404 + GFF5623 0.65 -0.7
1,404 + GFF5623 0.65 -0.1
1,404 + GFF5623 0.65 -1.9
1,405 - GFF5623 0.65 +1.3
1,405 - GFF5623 0.65 +0.1
1,497 + GFF5623 0.73 +1.1
1,497 + GFF5623 0.73 -0.9
1,497 + GFF5623 0.73 -0.8
1,497 + GFF5623 0.73 +1.2
1,497 + GFF5623 0.73 -2.0
1,498 - GFF5623 0.73 -0.5
1,498 - GFF5623 0.73 +0.2
1,498 - GFF5623 0.73 +0.4
1,498 - GFF5623 0.73 +0.8
1,498 - GFF5623 0.73 -0.8
1,498 - GFF5623 0.73 +0.5
1,498 - GFF5623 0.73 -1.5

Or see this region's nucleotide sequence