Strain Fitness in Variovorax sp. SCN45 around GFF5607

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5606 and GFF5607 are separated by 4 nucleotidesGFF5607 and GFF5608 are separated by 136 nucleotides GFF5606 - Xylose-responsive transcription regulator, ROK family, at 224,876 to 226,039 GFF5606 GFF5607 - Sigma-54 activated regulatory protein, at 226,044 to 227,324 GFF5607 GFF5608 - Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.2.8), at 227,461 to 229,575 GFF5608 Position (kb) 226 227 228Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 225.194 kb on + strand, within GFF5606at 225.492 kb on - strand, within GFF5606at 225.492 kb on - strand, within GFF5606at 225.645 kb on + strand, within GFF5606at 225.645 kb on + strand, within GFF5606at 225.645 kb on + strand, within GFF5606at 225.645 kb on + strand, within GFF5606at 225.972 kb on - strandat 225.972 kb on - strandat 225.972 kb on - strandat 226.093 kb on + strandat 226.093 kb on + strandat 226.226 kb on + strand, within GFF5607at 226.227 kb on - strand, within GFF5607at 226.620 kb on + strand, within GFF5607at 226.621 kb on - strand, within GFF5607at 226.621 kb on - strand, within GFF5607at 226.675 kb on + strand, within GFF5607at 226.675 kb on + strand, within GFF5607at 226.675 kb on + strand, within GFF5607at 226.676 kb on - strand, within GFF5607at 226.810 kb on + strand, within GFF5607at 226.810 kb on + strand, within GFF5607at 226.810 kb on + strand, within GFF5607at 226.810 kb on + strand, within GFF5607at 226.810 kb on + strand, within GFF5607at 226.810 kb on + strand, within GFF5607at 226.811 kb on - strand, within GFF5607at 226.811 kb on - strand, within GFF5607at 226.811 kb on - strand, within GFF5607at 226.811 kb on - strand, within GFF5607at 226.811 kb on - strand, within GFF5607at 227.507 kb on + strandat 227.507 kb on + strandat 227.507 kb on + strandat 227.507 kb on + strandat 227.507 kb on + strandat 227.507 kb on + strandat 227.507 kb on + strandat 227.507 kb on + strandat 227.507 kb on + strandat 227.507 kb on + strandat 227.507 kb on + strandat 227.508 kb on - strandat 227.508 kb on - strandat 227.508 kb on - strandat 227.508 kb on - strandat 227.508 kb on - strandat 227.508 kb on - strandat 227.508 kb on - strandat 227.508 kb on - strandat 227.594 kb on + strandat 227.594 kb on + strandat 227.595 kb on - strandat 227.595 kb on - strandat 227.595 kb on - strandat 227.725 kb on + strand, within GFF5608at 227.785 kb on + strand, within GFF5608at 227.785 kb on + strand, within GFF5608at 227.785 kb on + strand, within GFF5608at 227.785 kb on + strand, within GFF5608at 227.785 kb on + strand, within GFF5608at 227.785 kb on + strand, within GFF5608at 227.785 kb on + strand, within GFF5608at 227.785 kb on + strand, within GFF5608at 227.785 kb on + strand, within GFF5608at 227.785 kb on + strand, within GFF5608at 227.785 kb on + strand, within GFF5608at 227.785 kb on + strand, within GFF5608at 227.785 kb on + strand, within GFF5608at 227.785 kb on + strand, within GFF5608at 227.785 kb on + strand, within GFF5608at 227.785 kb on + strand, within GFF5608at 227.785 kb on + strand, within GFF5608at 227.785 kb on + strand, within GFF5608at 227.785 kb on + strand, within GFF5608at 227.786 kb on - strand, within GFF5608at 227.786 kb on - strand, within GFF5608at 227.786 kb on - strand, within GFF5608at 227.786 kb on - strand, within GFF5608at 227.786 kb on - strand, within GFF5608at 227.786 kb on - strand, within GFF5608at 227.786 kb on - strand, within GFF5608at 227.786 kb on - strand, within GFF5608at 227.786 kb on - strand, within GFF5608at 227.786 kb on - strand, within GFF5608at 227.786 kb on - strand, within GFF5608at 227.786 kb on - strand, within GFF5608at 227.786 kb on - strand, within GFF5608at 227.786 kb on - strand, within GFF5608at 227.786 kb on - strand, within GFF5608at 227.786 kb on - strand, within GFF5608at 227.938 kb on + strand, within GFF5608at 227.938 kb on + strand, within GFF5608at 227.938 kb on + strand, within GFF5608at 227.938 kb on + strand, within GFF5608at 227.939 kb on - strand, within GFF5608at 227.939 kb on - strand, within GFF5608at 227.939 kb on - strand, within GFF5608at 227.939 kb on - strand, within GFF5608at 227.939 kb on - strand, within GFF5608at 227.939 kb on - strand, within GFF5608at 228.034 kb on + strand, within GFF5608at 228.034 kb on + strand, within GFF5608at 228.034 kb on + strand, within GFF5608at 228.034 kb on + strand, within GFF5608at 228.034 kb on + strand, within GFF5608at 228.034 kb on + strand, within GFF5608at 228.034 kb on + strand, within GFF5608at 228.034 kb on + strand, within GFF5608at 228.035 kb on - strand, within GFF5608at 228.035 kb on - strand, within GFF5608at 228.035 kb on - strand, within GFF5608at 228.035 kb on - strand, within GFF5608at 228.035 kb on - strand, within GFF5608at 228.035 kb on - strand, within GFF5608at 228.100 kb on + strand, within GFF5608at 228.247 kb on + strand, within GFF5608at 228.316 kb on + strand, within GFF5608at 228.316 kb on + strand, within GFF5608at 228.316 kb on + strand, within GFF5608at 228.316 kb on + strand, within GFF5608at 228.316 kb on + strand, within GFF5608at 228.316 kb on + strand, within GFF5608at 228.316 kb on + strand, within GFF5608at 228.316 kb on + strand, within GFF5608at 228.316 kb on + strand, within GFF5608at 228.316 kb on + strand, within GFF5608at 228.317 kb on + strand, within GFF5608at 228.317 kb on - strand, within GFF5608at 228.317 kb on - strand, within GFF5608at 228.317 kb on - strand, within GFF5608at 228.317 kb on - strand, within GFF5608at 228.317 kb on - strand, within GFF5608at 228.317 kb on - strand, within GFF5608at 228.317 kb on - strand, within GFF5608at 228.317 kb on - strand, within GFF5608at 228.317 kb on - strand, within GFF5608at 228.317 kb on - strand, within GFF5608

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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225,194 + GFF5606 0.27 +0.4
225,492 - GFF5606 0.53 -1.5
225,492 - GFF5606 0.53 -3.9
225,645 + GFF5606 0.66 +2.8
225,645 + GFF5606 0.66 +0.4
225,645 + GFF5606 0.66 -0.8
225,645 + GFF5606 0.66 +0.8
225,972 - -0.4
225,972 - +1.3
225,972 - +2.4
226,093 + -0.6
226,093 + -0.6
226,226 + GFF5607 0.14 -1.1
226,227 - GFF5607 0.14 +0.4
226,620 + GFF5607 0.45 +0.7
226,621 - GFF5607 0.45 -2.3
226,621 - GFF5607 0.45 +0.7
226,675 + GFF5607 0.49 -0.4
226,675 + GFF5607 0.49 +2.4
226,675 + GFF5607 0.49 +0.0
226,676 - GFF5607 0.49 -0.3
226,810 + GFF5607 0.60 -2.7
226,810 + GFF5607 0.60 -1.1
226,810 + GFF5607 0.60 -0.8
226,810 + GFF5607 0.60 -3.2
226,810 + GFF5607 0.60 -0.8
226,810 + GFF5607 0.60 -2.3
226,811 - GFF5607 0.60 -2.7
226,811 - GFF5607 0.60 +1.2
226,811 - GFF5607 0.60 -0.8
226,811 - GFF5607 0.60 -3.6
226,811 - GFF5607 0.60 -1.3
227,507 + -2.0
227,507 + -1.5
227,507 + -3.7
227,507 + -1.5
227,507 + -1.3
227,507 + -2.3
227,507 + -0.5
227,507 + -2.1
227,507 + -1.2
227,507 + -0.5
227,507 + +0.5
227,508 - -2.5
227,508 - +1.1
227,508 - -0.4
227,508 - -1.9
227,508 - -1.3
227,508 - -0.1
227,508 - -2.0
227,508 - -1.3
227,594 + +1.1
227,594 + -2.6
227,595 - -1.8
227,595 - +0.1
227,595 - -1.3
227,725 + GFF5608 0.12 +0.4
227,785 + GFF5608 0.15 -1.1
227,785 + GFF5608 0.15 +0.2
227,785 + GFF5608 0.15 -2.5
227,785 + GFF5608 0.15 +0.4
227,785 + GFF5608 0.15 -0.2
227,785 + GFF5608 0.15 -1.1
227,785 + GFF5608 0.15 -0.2
227,785 + GFF5608 0.15 -0.2
227,785 + GFF5608 0.15 -1.3
227,785 + GFF5608 0.15 -2.7
227,785 + GFF5608 0.15 -0.6
227,785 + GFF5608 0.15 +2.5
227,785 + GFF5608 0.15 -0.8
227,785 + GFF5608 0.15 -1.4
227,785 + GFF5608 0.15 -1.6
227,785 + GFF5608 0.15 -0.6
227,785 + GFF5608 0.15 +1.2
227,785 + GFF5608 0.15 +1.9
227,785 + GFF5608 0.15 -1.6
227,786 - GFF5608 0.15 -2.3
227,786 - GFF5608 0.15 +1.4
227,786 - GFF5608 0.15 +1.6
227,786 - GFF5608 0.15 -0.6
227,786 - GFF5608 0.15 +1.0
227,786 - GFF5608 0.15 -0.6
227,786 - GFF5608 0.15 -1.8
227,786 - GFF5608 0.15 -1.8
227,786 - GFF5608 0.15 -0.5
227,786 - GFF5608 0.15 +0.5
227,786 - GFF5608 0.15 -1.6
227,786 - GFF5608 0.15 -0.5
227,786 - GFF5608 0.15 -3.0
227,786 - GFF5608 0.15 +0.9
227,786 - GFF5608 0.15 -0.8
227,786 - GFF5608 0.15 +0.5
227,938 + GFF5608 0.23 +0.1
227,938 + GFF5608 0.23 -0.2
227,938 + GFF5608 0.23 -1.8
227,938 + GFF5608 0.23 -3.1
227,939 - GFF5608 0.23 -2.1
227,939 - GFF5608 0.23 +0.0
227,939 - GFF5608 0.23 -0.1
227,939 - GFF5608 0.23 -1.0
227,939 - GFF5608 0.23 +2.4
227,939 - GFF5608 0.23 -0.5
228,034 + GFF5608 0.27 +0.7
228,034 + GFF5608 0.27 +0.2
228,034 + GFF5608 0.27 +0.8
228,034 + GFF5608 0.27 +0.8
228,034 + GFF5608 0.27 +0.1
228,034 + GFF5608 0.27 +0.7
228,034 + GFF5608 0.27 +1.7
228,034 + GFF5608 0.27 -0.9
228,035 - GFF5608 0.27 -2.6
228,035 - GFF5608 0.27 -1.3
228,035 - GFF5608 0.27 -2.3
228,035 - GFF5608 0.27 -0.8
228,035 - GFF5608 0.27 -0.1
228,035 - GFF5608 0.27 +1.7
228,100 + GFF5608 0.30 +2.4
228,247 + GFF5608 0.37 -0.5
228,316 + GFF5608 0.40 +1.4
228,316 + GFF5608 0.40 -2.7
228,316 + GFF5608 0.40 -1.6
228,316 + GFF5608 0.40 -2.5
228,316 + GFF5608 0.40 -2.2
228,316 + GFF5608 0.40 +0.5
228,316 + GFF5608 0.40 -1.0
228,316 + GFF5608 0.40 +0.2
228,316 + GFF5608 0.40 +1.4
228,316 + GFF5608 0.40 -0.5
228,317 + GFF5608 0.40 -3.9
228,317 - GFF5608 0.40 -1.3
228,317 - GFF5608 0.40 -2.2
228,317 - GFF5608 0.40 +0.4
228,317 - GFF5608 0.40 -2.2
228,317 - GFF5608 0.40 -2.1
228,317 - GFF5608 0.40 -0.5
228,317 - GFF5608 0.40 +1.2
228,317 - GFF5608 0.40 -0.6
228,317 - GFF5608 0.40 -1.1
228,317 - GFF5608 0.40 +0.1

Or see this region's nucleotide sequence