Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5486 and GFF5487 are separated by 127 nucleotides GFF5487 and GFF5488 are separated by 13 nucleotides GFF5488 and GFF5489 are separated by 105 nucleotides
GFF5486 - Protein translocase subunit SecF, at 117,262 to 118,221
GFF5486
GFF5487 - Thymidine phosphorylase (EC 2.4.2.4), at 118,349 to 120,748
GFF5487
GFF5488 - Protein of unknown function Smg, at 120,762 to 121,280
GFF5488
GFF5489 - Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake, at 121,386 to 122,483
GFF5489
Position (kb) 118
119
120
121 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 118.226 kb on + strand at 118.226 kb on + strand at 118.227 kb on - strand at 118.227 kb on - strand at 118.227 kb on - strand at 118.227 kb on - strand at 118.227 kb on - strand at 118.322 kb on + strand at 118.916 kb on + strand, within GFF5487 at 118.916 kb on + strand, within GFF5487 at 118.916 kb on + strand, within GFF5487 at 118.916 kb on + strand, within GFF5487 at 118.916 kb on + strand, within GFF5487 at 118.916 kb on + strand, within GFF5487 at 118.916 kb on + strand, within GFF5487 at 118.916 kb on + strand, within GFF5487 at 118.916 kb on + strand, within GFF5487 at 118.916 kb on + strand, within GFF5487 at 118.916 kb on + strand, within GFF5487 at 118.916 kb on + strand, within GFF5487 at 118.916 kb on + strand, within GFF5487 at 118.917 kb on - strand, within GFF5487 at 118.917 kb on - strand, within GFF5487 at 118.917 kb on - strand, within GFF5487 at 118.917 kb on - strand, within GFF5487 at 118.917 kb on - strand, within GFF5487 at 118.917 kb on - strand, within GFF5487 at 118.917 kb on - strand, within GFF5487 at 118.917 kb on - strand, within GFF5487 at 118.917 kb on - strand, within GFF5487 at 118.917 kb on - strand, within GFF5487 at 118.917 kb on - strand, within GFF5487 at 118.917 kb on - strand, within GFF5487 at 118.917 kb on - strand, within GFF5487 at 118.917 kb on - strand, within GFF5487 at 118.917 kb on - strand, within GFF5487 at 118.917 kb on - strand, within GFF5487 at 118.917 kb on - strand, within GFF5487 at 118.917 kb on - strand, within GFF5487 at 118.917 kb on - strand, within GFF5487 at 119.261 kb on + strand, within GFF5487 at 119.261 kb on + strand, within GFF5487 at 119.261 kb on + strand, within GFF5487 at 119.261 kb on + strand, within GFF5487 at 119.261 kb on + strand, within GFF5487 at 119.262 kb on - strand, within GFF5487 at 119.262 kb on - strand, within GFF5487 at 119.262 kb on - strand, within GFF5487 at 119.262 kb on - strand, within GFF5487 at 119.262 kb on - strand, within GFF5487 at 119.396 kb on + strand, within GFF5487 at 119.397 kb on - strand, within GFF5487 at 119.417 kb on + strand, within GFF5487 at 119.417 kb on + strand, within GFF5487 at 119.417 kb on + strand, within GFF5487 at 119.417 kb on + strand, within GFF5487 at 119.417 kb on + strand, within GFF5487 at 119.417 kb on + strand, within GFF5487 at 119.417 kb on + strand, within GFF5487 at 119.417 kb on + strand, within GFF5487 at 119.417 kb on + strand, within GFF5487 at 119.417 kb on + strand, within GFF5487 at 119.417 kb on + strand, within GFF5487 at 119.417 kb on + strand, within GFF5487 at 119.417 kb on + strand, within GFF5487 at 119.417 kb on + strand, within GFF5487 at 119.417 kb on + strand, within GFF5487 at 119.417 kb on + strand, within GFF5487 at 119.417 kb on + strand, within GFF5487 at 119.417 kb on + strand, within GFF5487 at 119.417 kb on + strand, within GFF5487 at 119.417 kb on + strand, within GFF5487 at 119.418 kb on - strand, within GFF5487 at 119.418 kb on - strand, within GFF5487 at 119.418 kb on - strand, within GFF5487 at 119.418 kb on - strand, within GFF5487 at 119.418 kb on - strand, within GFF5487 at 119.418 kb on - strand, within GFF5487 at 119.418 kb on - strand, within GFF5487 at 119.418 kb on - strand, within GFF5487 at 119.418 kb on - strand, within GFF5487 at 119.418 kb on - strand, within GFF5487 at 119.418 kb on - strand, within GFF5487 at 119.418 kb on - strand, within GFF5487 at 119.418 kb on - strand, within GFF5487 at 119.792 kb on + strand, within GFF5487 at 119.793 kb on - strand, within GFF5487 at 119.793 kb on - strand, within GFF5487 at 119.793 kb on - strand, within GFF5487 at 119.793 kb on - strand, within GFF5487 at 119.839 kb on - strand, within GFF5487 at 119.858 kb on + strand, within GFF5487 at 119.858 kb on + strand, within GFF5487 at 119.859 kb on - strand, within GFF5487 at 119.859 kb on - strand, within GFF5487 at 119.939 kb on + strand, within GFF5487 at 119.939 kb on + strand, within GFF5487 at 119.939 kb on + strand, within GFF5487 at 119.939 kb on + strand, within GFF5487 at 119.939 kb on + strand, within GFF5487 at 119.939 kb on + strand, within GFF5487 at 119.939 kb on + strand, within GFF5487 at 119.939 kb on + strand, within GFF5487 at 119.939 kb on + strand, within GFF5487 at 119.939 kb on + strand, within GFF5487 at 119.940 kb on - strand, within GFF5487 at 119.940 kb on - strand, within GFF5487 at 119.940 kb on - strand, within GFF5487 at 119.940 kb on - strand, within GFF5487 at 119.940 kb on - strand, within GFF5487 at 119.940 kb on - strand, within GFF5487 at 119.940 kb on - strand, within GFF5487 at 119.940 kb on - strand, within GFF5487 at 119.940 kb on - strand, within GFF5487 at 119.940 kb on - strand, within GFF5487 at 120.048 kb on - strand, within GFF5487 at 120.638 kb on + strand at 120.638 kb on + strand at 120.638 kb on + strand at 120.638 kb on + strand at 120.638 kb on + strand at 120.638 kb on + strand at 120.638 kb on + strand at 120.638 kb on + strand at 120.638 kb on + strand at 120.638 kb on + strand at 120.638 kb on + strand at 120.638 kb on + strand at 120.638 kb on + strand at 120.638 kb on + strand at 120.638 kb on + strand at 120.638 kb on + strand at 120.638 kb on + strand at 120.638 kb on + strand at 120.638 kb on + strand at 120.638 kb on + strand at 120.638 kb on + strand at 120.638 kb on + strand at 120.638 kb on + strand at 120.638 kb on + strand at 120.638 kb on + strand at 120.638 kb on + strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.639 kb on - strand at 120.746 kb on + strand at 120.746 kb on + strand at 120.746 kb on + strand at 120.747 kb on - strand at 120.747 kb on - strand at 120.747 kb on - strand at 120.747 kb on - strand at 120.747 kb on - strand at 121.015 kb on + strand, within GFF5488 at 121.015 kb on + strand, within GFF5488 at 121.015 kb on + strand, within GFF5488 at 121.015 kb on + strand, within GFF5488 at 121.015 kb on + strand, within GFF5488 at 121.015 kb on + strand, within GFF5488 at 121.015 kb on + strand, within GFF5488 at 121.015 kb on + strand, within GFF5488 at 121.015 kb on + strand, within GFF5488 at 121.015 kb on + strand, within GFF5488 at 121.016 kb on - strand, within GFF5488 at 121.016 kb on - strand, within GFF5488 at 121.155 kb on + strand, within GFF5488 at 121.246 kb on + strand at 121.246 kb on + strand at 121.246 kb on + strand at 121.246 kb on + strand at 121.246 kb on + strand at 121.246 kb on + strand at 121.247 kb on - strand at 121.247 kb on - strand at 121.247 kb on - strand at 121.247 kb on - strand at 121.247 kb on - strand at 121.247 kb on - strand at 121.247 kb on - strand at 121.247 kb on - strand at 121.247 kb on - strand at 121.247 kb on - strand at 121.255 kb on + strand at 121.255 kb on + strand at 121.256 kb on - strand at 121.269 kb on + strand at 121.269 kb on + strand at 121.269 kb on + strand at 121.269 kb on + strand at 121.269 kb on + strand at 121.269 kb on + strand at 121.269 kb on + strand at 121.269 kb on + strand at 121.269 kb on + strand at 121.269 kb on + strand at 121.269 kb on + strand at 121.269 kb on + strand at 121.269 kb on + strand at 121.270 kb on - strand at 121.270 kb on - strand at 121.270 kb on - strand at 121.270 kb on - strand at 121.270 kb on - strand at 121.270 kb on - strand at 121.270 kb on - strand at 121.270 kb on - strand at 121.270 kb on - strand at 121.270 kb on - strand at 121.290 kb on + strand at 121.290 kb on + strand at 121.290 kb on + strand at 121.290 kb on + strand at 121.290 kb on + strand at 121.290 kb on + strand at 121.290 kb on + strand at 121.290 kb on + strand at 121.290 kb on + strand at 121.290 kb on + strand at 121.290 kb on + strand at 121.290 kb on + strand at 121.290 kb on + strand at 121.290 kb on + strand at 121.290 kb on + strand at 121.290 kb on + strand at 121.290 kb on + strand at 121.290 kb on + strand at 121.290 kb on + strand at 121.291 kb on - strand at 121.291 kb on - strand at 121.291 kb on - strand at 121.291 kb on - strand at 121.291 kb on - strand at 121.291 kb on - strand at 121.291 kb on - strand at 121.291 kb on - strand at 121.291 kb on - strand at 121.291 kb on - strand at 121.291 kb on - strand at 121.292 kb on + strand at 121.292 kb on + strand at 121.292 kb on + strand at 121.292 kb on + strand at 121.292 kb on + strand at 121.292 kb on + strand at 121.292 kb on + strand at 121.292 kb on + strand at 121.292 kb on + strand at 121.292 kb on + strand at 121.292 kb on + strand at 121.292 kb on + strand at 121.292 kb on + strand at 121.292 kb on + strand at 121.292 kb on + strand at 121.292 kb on + strand at 121.292 kb on + strand at 121.292 kb on + strand at 121.292 kb on + strand at 121.292 kb on + strand at 121.292 kb on + strand at 121.293 kb on - strand at 121.293 kb on - strand at 121.293 kb on - strand at 121.293 kb on - strand at 121.293 kb on - strand at 121.293 kb on - strand at 121.293 kb on - strand at 121.293 kb on - strand at 121.293 kb on - strand at 121.293 kb on - strand at 121.293 kb on - strand at 121.293 kb on - strand at 121.293 kb on - strand at 121.293 kb on - strand at 121.387 kb on + strand at 121.387 kb on + strand at 121.387 kb on + strand at 121.387 kb on + strand at 121.388 kb on - strand at 121.388 kb on - strand at 121.455 kb on + strand at 121.456 kb on - strand at 121.456 kb on - strand at 121.456 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 118,226 + -2.1 118,226 + +0.7 118,227 - +1.1 118,227 - +1.4 118,227 - +2.4 118,227 - +1.0 118,227 - +0.7 118,322 + -0.6 118,916 + GFF5487 0.24 +1.4 118,916 + GFF5487 0.24 -0.0 118,916 + GFF5487 0.24 +1.6 118,916 + GFF5487 0.24 -0.8 118,916 + GFF5487 0.24 -0.1 118,916 + GFF5487 0.24 +1.7 118,916 + GFF5487 0.24 -2.5 118,916 + GFF5487 0.24 +2.7 118,916 + GFF5487 0.24 +3.7 118,916 + GFF5487 0.24 +2.0 118,916 + GFF5487 0.24 -1.9 118,916 + GFF5487 0.24 +2.5 118,916 + GFF5487 0.24 +2.2 118,917 - GFF5487 0.24 -0.6 118,917 - GFF5487 0.24 -0.2 118,917 - GFF5487 0.24 -0.7 118,917 - GFF5487 0.24 +1.9 118,917 - GFF5487 0.24 -0.4 118,917 - GFF5487 0.24 -1.2 118,917 - GFF5487 0.24 +2.0 118,917 - GFF5487 0.24 +2.4 118,917 - GFF5487 0.24 +2.2 118,917 - GFF5487 0.24 +0.0 118,917 - GFF5487 0.24 -1.5 118,917 - GFF5487 0.24 -1.9 118,917 - GFF5487 0.24 +2.4 118,917 - GFF5487 0.24 +2.9 118,917 - GFF5487 0.24 -0.8 118,917 - GFF5487 0.24 +0.3 118,917 - GFF5487 0.24 +0.5 118,917 - GFF5487 0.24 +1.2 118,917 - GFF5487 0.24 -2.6 119,261 + GFF5487 0.38 +1.7 119,261 + GFF5487 0.38 -0.8 119,261 + GFF5487 0.38 -0.9 119,261 + GFF5487 0.38 +0.3 119,261 + GFF5487 0.38 +0.1 119,262 - GFF5487 0.38 +1.3 119,262 - GFF5487 0.38 +1.4 119,262 - GFF5487 0.38 -0.6 119,262 - GFF5487 0.38 +2.2 119,262 - GFF5487 0.38 +2.7 119,396 + GFF5487 0.44 +1.7 119,397 - GFF5487 0.44 +1.3 119,417 + GFF5487 0.45 +1.2 119,417 + GFF5487 0.45 +0.1 119,417 + GFF5487 0.45 +0.0 119,417 + GFF5487 0.45 -1.5 119,417 + GFF5487 0.45 +0.4 119,417 + GFF5487 0.45 +1.6 119,417 + GFF5487 0.45 -2.2 119,417 + GFF5487 0.45 +1.7 119,417 + GFF5487 0.45 +1.9 119,417 + GFF5487 0.45 +3.2 119,417 + GFF5487 0.45 +2.8 119,417 + GFF5487 0.45 +1.8 119,417 + GFF5487 0.45 -0.9 119,417 + GFF5487 0.45 +1.1 119,417 + GFF5487 0.45 -3.0 119,417 + GFF5487 0.45 +0.8 119,417 + GFF5487 0.45 +3.4 119,417 + GFF5487 0.45 +1.4 119,417 + GFF5487 0.45 -0.0 119,417 + GFF5487 0.45 +1.1 119,418 - GFF5487 0.45 +0.1 119,418 - GFF5487 0.45 -1.1 119,418 - GFF5487 0.45 -0.2 119,418 - GFF5487 0.45 +1.7 119,418 - GFF5487 0.45 +2.5 119,418 - GFF5487 0.45 -0.3 119,418 - GFF5487 0.45 +0.8 119,418 - GFF5487 0.45 +1.2 119,418 - GFF5487 0.45 +0.8 119,418 - GFF5487 0.45 +0.1 119,418 - GFF5487 0.45 +1.4 119,418 - GFF5487 0.45 +1.3 119,418 - GFF5487 0.45 +1.1 119,792 + GFF5487 0.60 +0.1 119,793 - GFF5487 0.60 -1.7 119,793 - GFF5487 0.60 +2.3 119,793 - GFF5487 0.60 -0.9 119,793 - GFF5487 0.60 +2.1 119,839 - GFF5487 0.62 +1.8 119,858 + GFF5487 0.63 -1.3 119,858 + GFF5487 0.63 +1.2 119,859 - GFF5487 0.63 -1.2 119,859 - GFF5487 0.63 +0.6 119,939 + GFF5487 0.66 -0.1 119,939 + GFF5487 0.66 -0.4 119,939 + GFF5487 0.66 -0.9 119,939 + GFF5487 0.66 +1.6 119,939 + GFF5487 0.66 -0.1 119,939 + GFF5487 0.66 +1.6 119,939 + GFF5487 0.66 -0.7 119,939 + GFF5487 0.66 -0.8 119,939 + GFF5487 0.66 -2.1 119,939 + GFF5487 0.66 +0.5 119,940 - GFF5487 0.66 +0.5 119,940 - GFF5487 0.66 +3.3 119,940 - GFF5487 0.66 -2.2 119,940 - GFF5487 0.66 +2.0 119,940 - GFF5487 0.66 +1.5 119,940 - GFF5487 0.66 -2.6 119,940 - GFF5487 0.66 -0.9 119,940 - GFF5487 0.66 -0.7 119,940 - GFF5487 0.66 +1.6 119,940 - GFF5487 0.66 +2.7 120,048 - GFF5487 0.71 +2.7 120,638 + +0.4 120,638 + +1.3 120,638 + +1.5 120,638 + +0.4 120,638 + +0.1 120,638 + -1.7 120,638 + +1.8 120,638 + -1.2 120,638 + +7.1 120,638 + -2.5 120,638 + -1.5 120,638 + +1.6 120,638 + -1.5 120,638 + +1.6 120,638 + +2.0 120,638 + -2.1 120,638 + +0.2 120,638 + +0.1 120,638 + +2.6 120,638 + +0.9 120,638 + -0.2 120,638 + +1.5 120,638 + -2.7 120,638 + +0.9 120,638 + +0.9 120,638 + +1.5 120,639 - +1.8 120,639 - -0.9 120,639 - +2.6 120,639 - +1.7 120,639 - +1.9 120,639 - +0.1 120,639 - +0.9 120,639 - +1.6 120,639 - +1.1 120,639 - +0.6 120,639 - +0.1 120,639 - +1.2 120,639 - +1.0 120,639 - -1.3 120,639 - +1.4 120,639 - +2.1 120,639 - +0.1 120,639 - +1.8 120,639 - +2.1 120,639 - -2.4 120,639 - -0.2 120,639 - +0.9 120,639 - +1.6 120,639 - +0.8 120,639 - +1.0 120,639 - +1.2 120,639 - +0.1 120,639 - +1.6 120,639 - +1.9 120,639 - +2.3 120,639 - -0.8 120,639 - +0.0 120,639 - +2.4 120,639 - -2.1 120,639 - -0.1 120,639 - +1.0 120,639 - -0.5 120,639 - -1.8 120,639 - +1.8 120,639 - -0.8 120,746 + +0.9 120,746 + -1.1 120,746 + -0.2 120,747 - -1.5 120,747 - -1.6 120,747 - -0.2 120,747 - +1.4 120,747 - -0.4 121,015 + GFF5488 0.49 +1.8 121,015 + GFF5488 0.49 +1.4 121,015 + GFF5488 0.49 -0.2 121,015 + GFF5488 0.49 -0.9 121,015 + GFF5488 0.49 -1.6 121,015 + GFF5488 0.49 +1.0 121,015 + GFF5488 0.49 -0.1 121,015 + GFF5488 0.49 -1.7 121,015 + GFF5488 0.49 -1.4 121,015 + GFF5488 0.49 -1.5 121,016 - GFF5488 0.49 -0.1 121,016 - GFF5488 0.49 -2.2 121,155 + GFF5488 0.76 +0.9 121,246 + -2.4 121,246 + +0.1 121,246 + +0.3 121,246 + -2.2 121,246 + -0.4 121,246 + -1.1 121,247 - -2.0 121,247 - -1.5 121,247 - -3.7 121,247 - +2.7 121,247 - -0.6 121,247 - -0.5 121,247 - +3.7 121,247 - +0.3 121,247 - -2.8 121,247 - -2.9 121,255 + +0.1 121,255 + -1.8 121,256 - -1.4 121,269 + -1.8 121,269 + -0.9 121,269 + -1.2 121,269 + -2.3 121,269 + -2.1 121,269 + +1.1 121,269 + -1.3 121,269 + +0.2 121,269 + -0.1 121,269 + -2.0 121,269 + -1.9 121,269 + -0.1 121,269 + +0.5 121,270 - -0.6 121,270 - -2.2 121,270 - -0.3 121,270 - -0.3 121,270 - +0.4 121,270 - -0.4 121,270 - -0.9 121,270 - +2.5 121,270 - -1.8 121,270 - -1.5 121,290 + -1.8 121,290 + +0.1 121,290 + -2.3 121,290 + +2.4 121,290 + +0.2 121,290 + -2.6 121,290 + +1.2 121,290 + -2.5 121,290 + -3.5 121,290 + +1.0 121,290 + -2.0 121,290 + +0.4 121,290 + -1.0 121,290 + +0.1 121,290 + -0.9 121,290 + -2.8 121,290 + -1.5 121,290 + +0.9 121,290 + +0.5 121,291 - +1.7 121,291 - -1.6 121,291 - +0.5 121,291 - +0.1 121,291 - -1.6 121,291 - -1.9 121,291 - -1.6 121,291 - +0.2 121,291 - +1.9 121,291 - -0.4 121,291 - -0.6 121,292 + -0.7 121,292 + -0.9 121,292 + -0.7 121,292 + +2.0 121,292 + -0.4 121,292 + -0.8 121,292 + +0.3 121,292 + -0.7 121,292 + +1.3 121,292 + +0.1 121,292 + -1.3 121,292 + -3.5 121,292 + -2.3 121,292 + +1.2 121,292 + -1.4 121,292 + -0.3 121,292 + -0.6 121,292 + +0.4 121,292 + +1.1 121,292 + -1.5 121,292 + -0.9 121,293 - -2.7 121,293 - -1.2 121,293 - -0.1 121,293 - -1.0 121,293 - -2.1 121,293 - -0.4 121,293 - +0.1 121,293 - +1.3 121,293 - +1.1 121,293 - -0.3 121,293 - -1.3 121,293 - -0.1 121,293 - -1.3 121,293 - +0.7 121,387 + -0.2 121,387 + -2.3 121,387 + -1.8 121,387 + -0.6 121,388 - +1.1 121,388 - -0.2 121,455 + -0.3 121,456 - +0.8 121,456 - +1.0 121,456 - -1.8
Or see this region's nucleotide sequence