Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5455 and GFF5456 are separated by 73 nucleotides GFF5456 and GFF5457 are separated by 178 nucleotides
GFF5455 - Pyruvate dehydrogenase E1 component (EC 1.2.4.1), at 84,207 to 86,867
GFF5455
GFF5456 - L-threonate/D-erythronate transcriptional regulator, GntR family, at 86,941 to 87,717
GFF5456
GFF5457 - L-threonate dehydrogenase (NAD+), at 87,896 to 88,768
GFF5457
Position (kb) 86
87
88 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 85.941 kb on + strand, within GFF5455 at 85.942 kb on - strand, within GFF5455 at 86.028 kb on + strand, within GFF5455 at 86.028 kb on + strand, within GFF5455 at 86.028 kb on + strand, within GFF5455 at 86.028 kb on + strand, within GFF5455 at 86.028 kb on + strand, within GFF5455 at 86.028 kb on + strand, within GFF5455 at 86.028 kb on + strand, within GFF5455 at 86.028 kb on + strand, within GFF5455 at 86.029 kb on - strand, within GFF5455 at 86.029 kb on - strand, within GFF5455 at 86.029 kb on - strand, within GFF5455 at 86.029 kb on - strand, within GFF5455 at 86.029 kb on - strand, within GFF5455 at 86.029 kb on - strand, within GFF5455 at 86.061 kb on + strand, within GFF5455 at 86.061 kb on + strand, within GFF5455 at 86.061 kb on + strand, within GFF5455 at 86.061 kb on + strand, within GFF5455 at 86.061 kb on + strand, within GFF5455 at 86.061 kb on + strand, within GFF5455 at 86.061 kb on + strand, within GFF5455 at 86.061 kb on + strand, within GFF5455 at 86.061 kb on + strand, within GFF5455 at 86.061 kb on + strand, within GFF5455 at 86.061 kb on + strand, within GFF5455 at 86.062 kb on - strand, within GFF5455 at 86.062 kb on - strand, within GFF5455 at 86.062 kb on - strand, within GFF5455 at 86.062 kb on - strand, within GFF5455 at 86.062 kb on - strand, within GFF5455 at 86.062 kb on - strand, within GFF5455 at 86.062 kb on - strand, within GFF5455 at 86.062 kb on - strand, within GFF5455 at 86.062 kb on - strand, within GFF5455 at 86.067 kb on + strand, within GFF5455 at 86.067 kb on + strand, within GFF5455 at 86.067 kb on + strand, within GFF5455 at 86.067 kb on + strand, within GFF5455 at 86.067 kb on + strand, within GFF5455 at 86.067 kb on + strand, within GFF5455 at 86.067 kb on + strand, within GFF5455 at 86.067 kb on + strand, within GFF5455 at 86.067 kb on + strand, within GFF5455 at 86.067 kb on + strand, within GFF5455 at 86.067 kb on + strand, within GFF5455 at 86.067 kb on + strand, within GFF5455 at 86.067 kb on + strand, within GFF5455 at 86.067 kb on + strand, within GFF5455 at 86.067 kb on + strand, within GFF5455 at 86.067 kb on + strand, within GFF5455 at 86.067 kb on + strand, within GFF5455 at 86.067 kb on + strand, within GFF5455 at 86.067 kb on + strand, within GFF5455 at 86.067 kb on + strand, within GFF5455 at 86.068 kb on - strand, within GFF5455 at 86.068 kb on - strand, within GFF5455 at 86.068 kb on - strand, within GFF5455 at 86.068 kb on - strand, within GFF5455 at 86.068 kb on - strand, within GFF5455 at 86.068 kb on - strand, within GFF5455 at 86.068 kb on - strand, within GFF5455 at 86.068 kb on - strand, within GFF5455 at 86.068 kb on - strand, within GFF5455 at 86.068 kb on - strand, within GFF5455 at 86.068 kb on - strand, within GFF5455 at 86.068 kb on - strand, within GFF5455 at 86.068 kb on - strand, within GFF5455 at 86.068 kb on - strand, within GFF5455 at 86.068 kb on - strand, within GFF5455 at 86.068 kb on - strand, within GFF5455 at 86.068 kb on - strand, within GFF5455 at 86.070 kb on + strand, within GFF5455 at 86.070 kb on + strand, within GFF5455 at 86.070 kb on + strand, within GFF5455 at 86.070 kb on + strand, within GFF5455 at 86.070 kb on + strand, within GFF5455 at 86.071 kb on - strand, within GFF5455 at 86.071 kb on - strand, within GFF5455 at 86.153 kb on + strand, within GFF5455 at 86.154 kb on - strand, within GFF5455 at 86.247 kb on + strand, within GFF5455 at 86.247 kb on + strand, within GFF5455 at 86.247 kb on + strand, within GFF5455 at 86.247 kb on + strand, within GFF5455 at 86.247 kb on + strand, within GFF5455 at 86.248 kb on - strand, within GFF5455 at 86.248 kb on - strand, within GFF5455 at 86.248 kb on - strand, within GFF5455 at 86.259 kb on + strand, within GFF5455 at 86.259 kb on + strand, within GFF5455 at 86.259 kb on + strand, within GFF5455 at 86.259 kb on + strand, within GFF5455 at 86.259 kb on + strand, within GFF5455 at 86.259 kb on + strand, within GFF5455 at 86.259 kb on + strand, within GFF5455 at 86.259 kb on + strand, within GFF5455 at 86.260 kb on - strand, within GFF5455 at 86.260 kb on - strand, within GFF5455 at 86.260 kb on - strand, within GFF5455 at 86.260 kb on - strand, within GFF5455 at 86.260 kb on - strand, within GFF5455 at 86.260 kb on - strand, within GFF5455 at 86.260 kb on - strand, within GFF5455 at 86.260 kb on - strand, within GFF5455 at 86.260 kb on - strand, within GFF5455 at 86.331 kb on + strand, within GFF5455 at 86.331 kb on + strand, within GFF5455 at 86.331 kb on + strand, within GFF5455 at 86.331 kb on + strand, within GFF5455 at 86.331 kb on + strand, within GFF5455 at 86.332 kb on - strand, within GFF5455 at 86.332 kb on - strand, within GFF5455 at 86.332 kb on - strand, within GFF5455 at 86.332 kb on - strand, within GFF5455 at 86.332 kb on - strand, within GFF5455 at 86.334 kb on + strand, within GFF5455 at 86.334 kb on + strand, within GFF5455 at 86.334 kb on + strand, within GFF5455 at 86.334 kb on + strand, within GFF5455 at 86.335 kb on - strand, within GFF5455 at 86.335 kb on - strand, within GFF5455 at 86.335 kb on - strand, within GFF5455 at 86.335 kb on - strand, within GFF5455 at 86.335 kb on - strand, within GFF5455 at 86.335 kb on - strand, within GFF5455 at 86.335 kb on - strand, within GFF5455 at 86.335 kb on - strand, within GFF5455 at 86.335 kb on - strand, within GFF5455 at 86.335 kb on - strand, within GFF5455 at 86.359 kb on - strand, within GFF5455 at 86.427 kb on + strand, within GFF5455 at 86.427 kb on + strand, within GFF5455 at 86.427 kb on + strand, within GFF5455 at 86.427 kb on + strand, within GFF5455 at 86.427 kb on + strand, within GFF5455 at 86.427 kb on + strand, within GFF5455 at 86.427 kb on + strand, within GFF5455 at 86.427 kb on + strand, within GFF5455 at 86.427 kb on + strand, within GFF5455 at 86.428 kb on - strand, within GFF5455 at 86.428 kb on - strand, within GFF5455 at 86.428 kb on - strand, within GFF5455 at 86.428 kb on - strand, within GFF5455 at 86.428 kb on - strand, within GFF5455 at 86.428 kb on - strand, within GFF5455 at 86.428 kb on - strand, within GFF5455 at 86.428 kb on - strand, within GFF5455 at 86.428 kb on - strand, within GFF5455 at 86.697 kb on + strand at 86.697 kb on + strand at 86.697 kb on + strand at 86.698 kb on - strand at 86.698 kb on - strand at 86.698 kb on - strand at 86.751 kb on + strand at 86.751 kb on + strand at 86.751 kb on + strand at 86.751 kb on + strand at 86.752 kb on - strand at 86.910 kb on + strand at 86.911 kb on - strand at 86.911 kb on - strand at 87.166 kb on + strand, within GFF5456 at 87.166 kb on + strand, within GFF5456 at 87.166 kb on + strand, within GFF5456 at 87.166 kb on + strand, within GFF5456 at 87.166 kb on + strand, within GFF5456 at 87.166 kb on + strand, within GFF5456 at 87.167 kb on - strand, within GFF5456 at 87.167 kb on - strand, within GFF5456 at 87.167 kb on - strand, within GFF5456 at 87.167 kb on - strand, within GFF5456 at 87.167 kb on - strand, within GFF5456 at 87.167 kb on - strand, within GFF5456 at 87.167 kb on - strand, within GFF5456 at 87.167 kb on - strand, within GFF5456 at 87.167 kb on - strand, within GFF5456 at 87.300 kb on + strand, within GFF5456 at 87.301 kb on - strand, within GFF5456 at 87.301 kb on - strand, within GFF5456 at 87.451 kb on + strand, within GFF5456 at 87.451 kb on + strand, within GFF5456 at 87.451 kb on + strand, within GFF5456 at 87.451 kb on + strand, within GFF5456 at 87.451 kb on + strand, within GFF5456 at 87.451 kb on + strand, within GFF5456 at 87.452 kb on - strand, within GFF5456 at 87.452 kb on - strand, within GFF5456 at 87.452 kb on - strand, within GFF5456 at 87.452 kb on - strand, within GFF5456 at 87.452 kb on - strand, within GFF5456 at 87.452 kb on - strand, within GFF5456 at 87.777 kb on - strand at 87.777 kb on - strand at 87.777 kb on - strand at 87.787 kb on + strand at 87.788 kb on - strand at 87.788 kb on - strand at 88.217 kb on + strand, within GFF5457 at 88.217 kb on + strand, within GFF5457 at 88.346 kb on + strand, within GFF5457 at 88.347 kb on - strand, within GFF5457 at 88.481 kb on + strand, within GFF5457 at 88.481 kb on + strand, within GFF5457 at 88.481 kb on + strand, within GFF5457 at 88.482 kb on - strand, within GFF5457 at 88.482 kb on - strand, within GFF5457 at 88.482 kb on - strand, within GFF5457 at 88.482 kb on - strand, within GFF5457 at 88.482 kb on - strand, within GFF5457 at 88.482 kb on - strand, within GFF5457 at 88.482 kb on - strand, within GFF5457 at 88.482 kb on - strand, within GFF5457 at 88.482 kb on - strand, within GFF5457 at 88.556 kb on + strand, within GFF5457 at 88.556 kb on + strand, within GFF5457 at 88.557 kb on - strand, within GFF5457 at 88.557 kb on - strand, within GFF5457 at 88.557 kb on - strand, within GFF5457 at 88.557 kb on - strand, within GFF5457 at 88.691 kb on + strand at 88.692 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 85,941 + GFF5455 0.65 -0.8 85,942 - GFF5455 0.65 -0.7 86,028 + GFF5455 0.68 -1.4 86,028 + GFF5455 0.68 -2.2 86,028 + GFF5455 0.68 +1.4 86,028 + GFF5455 0.68 -1.9 86,028 + GFF5455 0.68 -0.6 86,028 + GFF5455 0.68 +1.0 86,028 + GFF5455 0.68 -2.8 86,028 + GFF5455 0.68 +0.3 86,029 - GFF5455 0.68 +2.9 86,029 - GFF5455 0.68 -0.5 86,029 - GFF5455 0.68 -2.1 86,029 - GFF5455 0.68 -0.6 86,029 - GFF5455 0.68 -0.6 86,029 - GFF5455 0.68 -0.2 86,061 + GFF5455 0.70 +1.2 86,061 + GFF5455 0.70 -0.9 86,061 + GFF5455 0.70 +1.5 86,061 + GFF5455 0.70 -0.9 86,061 + GFF5455 0.70 +1.1 86,061 + GFF5455 0.70 +0.0 86,061 + GFF5455 0.70 +0.4 86,061 + GFF5455 0.70 +1.1 86,061 + GFF5455 0.70 -0.8 86,061 + GFF5455 0.70 -0.4 86,061 + GFF5455 0.70 +0.1 86,062 - GFF5455 0.70 -3.2 86,062 - GFF5455 0.70 -1.5 86,062 - GFF5455 0.70 +2.9 86,062 - GFF5455 0.70 +0.6 86,062 - GFF5455 0.70 +2.0 86,062 - GFF5455 0.70 +0.8 86,062 - GFF5455 0.70 -0.5 86,062 - GFF5455 0.70 +0.6 86,062 - GFF5455 0.70 +0.6 86,067 + GFF5455 0.70 +0.3 86,067 + GFF5455 0.70 -2.6 86,067 + GFF5455 0.70 +1.2 86,067 + GFF5455 0.70 -2.0 86,067 + GFF5455 0.70 +0.5 86,067 + GFF5455 0.70 -0.8 86,067 + GFF5455 0.70 -1.8 86,067 + GFF5455 0.70 -2.6 86,067 + GFF5455 0.70 +1.4 86,067 + GFF5455 0.70 -1.6 86,067 + GFF5455 0.70 +1.8 86,067 + GFF5455 0.70 +2.4 86,067 + GFF5455 0.70 -2.3 86,067 + GFF5455 0.70 -1.2 86,067 + GFF5455 0.70 -1.1 86,067 + GFF5455 0.70 -0.6 86,067 + GFF5455 0.70 -1.9 86,067 + GFF5455 0.70 -0.8 86,067 + GFF5455 0.70 -0.6 86,067 + GFF5455 0.70 -1.8 86,068 - GFF5455 0.70 +0.5 86,068 - GFF5455 0.70 -1.6 86,068 - GFF5455 0.70 +2.2 86,068 - GFF5455 0.70 +1.0 86,068 - GFF5455 0.70 +0.3 86,068 - GFF5455 0.70 +1.9 86,068 - GFF5455 0.70 +0.9 86,068 - GFF5455 0.70 -0.4 86,068 - GFF5455 0.70 -2.5 86,068 - GFF5455 0.70 +2.4 86,068 - GFF5455 0.70 -0.3 86,068 - GFF5455 0.70 +1.7 86,068 - GFF5455 0.70 -0.4 86,068 - GFF5455 0.70 -1.2 86,068 - GFF5455 0.70 -1.3 86,068 - GFF5455 0.70 -0.3 86,068 - GFF5455 0.70 +0.8 86,070 + GFF5455 0.70 +0.3 86,070 + GFF5455 0.70 +0.8 86,070 + GFF5455 0.70 +0.2 86,070 + GFF5455 0.70 +0.6 86,070 + GFF5455 0.70 -0.8 86,071 - GFF5455 0.70 -0.4 86,071 - GFF5455 0.70 -0.8 86,153 + GFF5455 0.73 +0.3 86,154 - GFF5455 0.73 -0.0 86,247 + GFF5455 0.77 -1.7 86,247 + GFF5455 0.77 +0.7 86,247 + GFF5455 0.77 -0.1 86,247 + GFF5455 0.77 -0.2 86,247 + GFF5455 0.77 +3.5 86,248 - GFF5455 0.77 -1.6 86,248 - GFF5455 0.77 +0.4 86,248 - GFF5455 0.77 +1.2 86,259 + GFF5455 0.77 -0.6 86,259 + GFF5455 0.77 +0.6 86,259 + GFF5455 0.77 -0.4 86,259 + GFF5455 0.77 +0.7 86,259 + GFF5455 0.77 +1.0 86,259 + GFF5455 0.77 -0.1 86,259 + GFF5455 0.77 -0.6 86,259 + GFF5455 0.77 -0.1 86,260 - GFF5455 0.77 +0.8 86,260 - GFF5455 0.77 +1.4 86,260 - GFF5455 0.77 -2.2 86,260 - GFF5455 0.77 +0.1 86,260 - GFF5455 0.77 -0.4 86,260 - GFF5455 0.77 +0.8 86,260 - GFF5455 0.77 +1.1 86,260 - GFF5455 0.77 +0.1 86,260 - GFF5455 0.77 -1.0 86,331 + GFF5455 0.80 +2.3 86,331 + GFF5455 0.80 -0.9 86,331 + GFF5455 0.80 -0.6 86,331 + GFF5455 0.80 -1.0 86,331 + GFF5455 0.80 +0.3 86,332 - GFF5455 0.80 -0.1 86,332 - GFF5455 0.80 -0.6 86,332 - GFF5455 0.80 +2.2 86,332 - GFF5455 0.80 +0.1 86,332 - GFF5455 0.80 +0.2 86,334 + GFF5455 0.80 -0.8 86,334 + GFF5455 0.80 +0.1 86,334 + GFF5455 0.80 -1.1 86,334 + GFF5455 0.80 +1.6 86,335 - GFF5455 0.80 +0.9 86,335 - GFF5455 0.80 -1.0 86,335 - GFF5455 0.80 +1.7 86,335 - GFF5455 0.80 +0.1 86,335 - GFF5455 0.80 -0.2 86,335 - GFF5455 0.80 -3.9 86,335 - GFF5455 0.80 -0.8 86,335 - GFF5455 0.80 -2.1 86,335 - GFF5455 0.80 +2.2 86,335 - GFF5455 0.80 +2.3 86,359 - GFF5455 0.81 +1.4 86,427 + GFF5455 0.83 -1.8 86,427 + GFF5455 0.83 -1.6 86,427 + GFF5455 0.83 -1.8 86,427 + GFF5455 0.83 -0.2 86,427 + GFF5455 0.83 -0.1 86,427 + GFF5455 0.83 -2.6 86,427 + GFF5455 0.83 +0.1 86,427 + GFF5455 0.83 -1.0 86,427 + GFF5455 0.83 +0.3 86,428 - GFF5455 0.83 +1.1 86,428 - GFF5455 0.83 +0.3 86,428 - GFF5455 0.83 +0.4 86,428 - GFF5455 0.83 -0.7 86,428 - GFF5455 0.83 +3.4 86,428 - GFF5455 0.83 -3.5 86,428 - GFF5455 0.83 +1.5 86,428 - GFF5455 0.83 -0.1 86,428 - GFF5455 0.83 -0.6 86,697 + +3.3 86,697 + -0.4 86,697 + -3.1 86,698 - -1.8 86,698 - -0.4 86,698 - -0.5 86,751 + -0.4 86,751 + -1.3 86,751 + +0.9 86,751 + +1.9 86,752 - -0.9 86,910 + -1.2 86,911 - -2.0 86,911 - -0.4 87,166 + GFF5456 0.29 -2.7 87,166 + GFF5456 0.29 +1.6 87,166 + GFF5456 0.29 -2.7 87,166 + GFF5456 0.29 -2.0 87,166 + GFF5456 0.29 -0.2 87,166 + GFF5456 0.29 -1.6 87,167 - GFF5456 0.29 +0.2 87,167 - GFF5456 0.29 -0.6 87,167 - GFF5456 0.29 -1.8 87,167 - GFF5456 0.29 -2.2 87,167 - GFF5456 0.29 -0.3 87,167 - GFF5456 0.29 +0.7 87,167 - GFF5456 0.29 -2.6 87,167 - GFF5456 0.29 +2.0 87,167 - GFF5456 0.29 -2.7 87,300 + GFF5456 0.46 +1.4 87,301 - GFF5456 0.46 +1.7 87,301 - GFF5456 0.46 +0.1 87,451 + GFF5456 0.66 +1.2 87,451 + GFF5456 0.66 -0.9 87,451 + GFF5456 0.66 -0.9 87,451 + GFF5456 0.66 +0.9 87,451 + GFF5456 0.66 -0.4 87,451 + GFF5456 0.66 -1.6 87,452 - GFF5456 0.66 -3.8 87,452 - GFF5456 0.66 +1.7 87,452 - GFF5456 0.66 +1.4 87,452 - GFF5456 0.66 +0.6 87,452 - GFF5456 0.66 +0.3 87,452 - GFF5456 0.66 +0.6 87,777 - -0.4 87,777 - +2.0 87,777 - -1.4 87,787 + -0.9 87,788 - +1.6 87,788 - +0.4 88,217 + GFF5457 0.37 -0.4 88,217 + GFF5457 0.37 -2.6 88,346 + GFF5457 0.52 +0.2 88,347 - GFF5457 0.52 -0.8 88,481 + GFF5457 0.67 -2.1 88,481 + GFF5457 0.67 -0.2 88,481 + GFF5457 0.67 -3.0 88,482 - GFF5457 0.67 +1.4 88,482 - GFF5457 0.67 +2.9 88,482 - GFF5457 0.67 -2.7 88,482 - GFF5457 0.67 +0.7 88,482 - GFF5457 0.67 -3.5 88,482 - GFF5457 0.67 -1.0 88,482 - GFF5457 0.67 +1.1 88,482 - GFF5457 0.67 -1.2 88,482 - GFF5457 0.67 -1.3 88,556 + GFF5457 0.76 -2.1 88,556 + GFF5457 0.76 -1.8 88,557 - GFF5457 0.76 -2.1 88,557 - GFF5457 0.76 +0.3 88,557 - GFF5457 0.76 -2.1 88,557 - GFF5457 0.76 -2.0 88,691 + -1.7 88,692 - -0.4
Or see this region's nucleotide sequence