Strain Fitness in Variovorax sp. SCN45 around GFF5374

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5373 and GFF5374 are separated by 86 nucleotidesGFF5374 and GFF5375 are separated by 21 nucleotides GFF5373 - Xylose isomerase-like TIM-barrel protein KPN_00539, at 45 to 452 GFF5373 GFF5374 - Glutamine amidotransferase, class I, at 539 to 1,483 GFF5374 GFF5375 - Acyl-CoA dehydrogenase, at 1,505 to 3,145 GFF5375 Position (kb) 0 1 2Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 0.046 kb on + strandat 0.046 kb on + strandat 0.046 kb on + strandat 0.046 kb on + strandat 0.088 kb on + strand, within GFF5373at 0.088 kb on + strand, within GFF5373at 0.088 kb on + strand, within GFF5373at 0.175 kb on + strand, within GFF5373at 0.175 kb on + strand, within GFF5373at 0.175 kb on + strand, within GFF5373at 0.176 kb on - strand, within GFF5373at 0.176 kb on - strand, within GFF5373at 0.176 kb on - strand, within GFF5373at 0.274 kb on + strand, within GFF5373at 0.274 kb on + strand, within GFF5373at 0.274 kb on + strand, within GFF5373at 0.274 kb on + strand, within GFF5373at 0.274 kb on + strand, within GFF5373at 0.274 kb on + strand, within GFF5373at 0.275 kb on - strand, within GFF5373at 0.275 kb on - strand, within GFF5373at 0.275 kb on - strand, within GFF5373at 0.275 kb on - strand, within GFF5373at 0.275 kb on - strand, within GFF5373at 0.275 kb on - strand, within GFF5373at 0.275 kb on - strand, within GFF5373at 0.275 kb on - strand, within GFF5373at 0.275 kb on - strand, within GFF5373at 0.275 kb on - strand, within GFF5373at 0.275 kb on - strand, within GFF5373at 0.346 kb on + strand, within GFF5373at 0.346 kb on + strand, within GFF5373at 0.346 kb on + strand, within GFF5373at 0.346 kb on + strand, within GFF5373at 0.346 kb on + strand, within GFF5373at 0.346 kb on + strand, within GFF5373at 0.346 kb on + strand, within GFF5373at 0.347 kb on - strand, within GFF5373at 0.347 kb on - strand, within GFF5373at 0.347 kb on - strand, within GFF5373at 0.347 kb on - strand, within GFF5373at 0.347 kb on - strand, within GFF5373at 0.493 kb on + strandat 0.493 kb on + strandat 0.493 kb on + strandat 0.493 kb on + strandat 0.493 kb on + strandat 0.493 kb on + strandat 0.493 kb on + strandat 0.493 kb on + strandat 0.493 kb on + strandat 0.494 kb on - strandat 0.494 kb on - strandat 0.494 kb on - strandat 0.494 kb on - strandat 0.494 kb on - strandat 0.494 kb on - strandat 0.494 kb on - strandat 0.692 kb on + strand, within GFF5374at 0.692 kb on + strand, within GFF5374at 0.692 kb on + strand, within GFF5374at 0.692 kb on + strand, within GFF5374at 0.692 kb on + strand, within GFF5374at 0.692 kb on + strand, within GFF5374at 0.692 kb on + strand, within GFF5374at 0.692 kb on + strand, within GFF5374at 0.692 kb on + strand, within GFF5374at 0.693 kb on - strand, within GFF5374at 0.693 kb on - strand, within GFF5374at 0.693 kb on - strand, within GFF5374at 0.693 kb on - strand, within GFF5374at 0.800 kb on + strand, within GFF5374at 0.800 kb on + strand, within GFF5374at 0.801 kb on - strand, within GFF5374at 0.801 kb on - strand, within GFF5374at 0.860 kb on + strand, within GFF5374at 0.860 kb on + strand, within GFF5374at 0.860 kb on + strand, within GFF5374at 0.860 kb on + strand, within GFF5374at 0.861 kb on - strand, within GFF5374at 0.861 kb on - strand, within GFF5374at 0.861 kb on - strand, within GFF5374at 0.861 kb on - strand, within GFF5374at 0.861 kb on - strand, within GFF5374at 0.861 kb on - strand, within GFF5374at 0.861 kb on - strand, within GFF5374at 0.914 kb on + strand, within GFF5374at 0.914 kb on + strand, within GFF5374at 0.915 kb on - strand, within GFF5374at 0.915 kb on - strand, within GFF5374at 0.915 kb on - strand, within GFF5374at 0.915 kb on - strand, within GFF5374at 0.915 kb on - strand, within GFF5374at 1.016 kb on + strand, within GFF5374at 1.016 kb on + strand, within GFF5374at 1.016 kb on + strand, within GFF5374at 1.016 kb on + strand, within GFF5374at 1.016 kb on + strand, within GFF5374at 1.016 kb on + strand, within GFF5374at 1.017 kb on - strand, within GFF5374at 1.017 kb on - strand, within GFF5374at 1.079 kb on + strand, within GFF5374at 1.079 kb on + strand, within GFF5374at 1.079 kb on + strand, within GFF5374at 1.079 kb on + strand, within GFF5374at 1.079 kb on + strand, within GFF5374at 1.079 kb on + strand, within GFF5374at 1.079 kb on + strand, within GFF5374at 1.079 kb on + strand, within GFF5374at 1.080 kb on - strand, within GFF5374at 1.080 kb on - strand, within GFF5374at 1.080 kb on - strand, within GFF5374at 1.080 kb on - strand, within GFF5374at 1.080 kb on - strand, within GFF5374at 1.080 kb on - strand, within GFF5374at 1.137 kb on - strand, within GFF5374at 1.137 kb on - strand, within GFF5374at 1.137 kb on - strand, within GFF5374at 1.137 kb on - strand, within GFF5374at 1.280 kb on + strand, within GFF5374at 1.280 kb on + strand, within GFF5374at 1.280 kb on + strand, within GFF5374at 1.280 kb on + strand, within GFF5374at 1.280 kb on + strand, within GFF5374at 1.280 kb on + strand, within GFF5374at 1.280 kb on + strand, within GFF5374at 1.280 kb on + strand, within GFF5374at 1.280 kb on + strand, within GFF5374at 1.280 kb on + strand, within GFF5374at 1.281 kb on - strand, within GFF5374at 1.281 kb on - strand, within GFF5374at 1.281 kb on - strand, within GFF5374at 1.281 kb on - strand, within GFF5374at 1.281 kb on - strand, within GFF5374at 1.319 kb on + strand, within GFF5374at 1.319 kb on + strand, within GFF5374at 1.319 kb on + strand, within GFF5374at 1.319 kb on + strand, within GFF5374at 1.319 kb on + strand, within GFF5374at 1.320 kb on - strand, within GFF5374at 1.320 kb on - strand, within GFF5374at 1.320 kb on - strand, within GFF5374at 1.320 kb on - strand, within GFF5374at 1.320 kb on - strand, within GFF5374at 1.926 kb on + strand, within GFF5375at 1.926 kb on + strand, within GFF5375at 1.926 kb on + strand, within GFF5375at 1.926 kb on + strand, within GFF5375at 1.926 kb on + strand, within GFF5375at 1.926 kb on + strand, within GFF5375at 1.926 kb on + strand, within GFF5375at 1.927 kb on - strand, within GFF5375at 1.927 kb on - strand, within GFF5375at 1.927 kb on - strand, within GFF5375at 1.927 kb on - strand, within GFF5375at 1.927 kb on - strand, within GFF5375at 2.178 kb on + strand, within GFF5375at 2.178 kb on + strand, within GFF5375at 2.178 kb on + strand, within GFF5375at 2.178 kb on + strand, within GFF5375at 2.178 kb on + strand, within GFF5375at 2.179 kb on - strand, within GFF5375at 2.179 kb on - strand, within GFF5375

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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46 + +0.4
46 + -1.7
46 + -0.9
46 + -1.2
88 + GFF5373 0.11 -0.5
88 + GFF5373 0.11 +0.2
88 + GFF5373 0.11 -0.2
175 + GFF5373 0.32 -0.8
175 + GFF5373 0.32 -0.8
175 + GFF5373 0.32 -1.7
176 - GFF5373 0.32 -0.4
176 - GFF5373 0.32 -0.4
176 - GFF5373 0.32 -0.3
274 + GFF5373 0.56 +0.9
274 + GFF5373 0.56 -1.5
274 + GFF5373 0.56 -0.9
274 + GFF5373 0.56 +0.3
274 + GFF5373 0.56 -2.5
274 + GFF5373 0.56 -2.2
275 - GFF5373 0.56 -1.7
275 - GFF5373 0.56 +0.8
275 - GFF5373 0.56 +0.2
275 - GFF5373 0.56 +0.7
275 - GFF5373 0.56 +1.4
275 - GFF5373 0.56 -1.1
275 - GFF5373 0.56 +0.7
275 - GFF5373 0.56 -1.6
275 - GFF5373 0.56 +0.7
275 - GFF5373 0.56 +0.8
275 - GFF5373 0.56 -2.1
346 + GFF5373 0.74 +1.7
346 + GFF5373 0.74 -0.4
346 + GFF5373 0.74 -1.8
346 + GFF5373 0.74 -0.4
346 + GFF5373 0.74 +0.1
346 + GFF5373 0.74 +2.0
346 + GFF5373 0.74 -3.4
347 - GFF5373 0.74 -0.2
347 - GFF5373 0.74 -0.2
347 - GFF5373 0.74 -1.3
347 - GFF5373 0.74 +1.1
347 - GFF5373 0.74 -1.1
493 + +0.4
493 + -2.6
493 + +2.4
493 + -1.1
493 + -0.3
493 + -0.4
493 + -0.6
493 + +0.4
493 + -2.1
494 - -2.3
494 - +1.2
494 - -1.6
494 - +0.3
494 - -1.0
494 - +0.9
494 - -0.6
692 + GFF5374 0.16 -0.3
692 + GFF5374 0.16 -3.2
692 + GFF5374 0.16 +0.8
692 + GFF5374 0.16 -1.5
692 + GFF5374 0.16 -0.0
692 + GFF5374 0.16 -0.8
692 + GFF5374 0.16 -1.6
692 + GFF5374 0.16 +0.7
692 + GFF5374 0.16 -0.2
693 - GFF5374 0.16 -2.2
693 - GFF5374 0.16 -2.9
693 - GFF5374 0.16 -2.1
693 - GFF5374 0.16 -0.5
800 + GFF5374 0.28 -0.2
800 + GFF5374 0.28 -1.2
801 - GFF5374 0.28 -0.0
801 - GFF5374 0.28 -0.6
860 + GFF5374 0.34 +1.9
860 + GFF5374 0.34 +0.5
860 + GFF5374 0.34 +2.7
860 + GFF5374 0.34 -1.4
861 - GFF5374 0.34 -0.4
861 - GFF5374 0.34 +1.5
861 - GFF5374 0.34 +1.3
861 - GFF5374 0.34 -2.0
861 - GFF5374 0.34 -3.6
861 - GFF5374 0.34 -0.3
861 - GFF5374 0.34 -1.2
914 + GFF5374 0.40 -2.7
914 + GFF5374 0.40 +0.5
915 - GFF5374 0.40 -1.1
915 - GFF5374 0.40 +0.5
915 - GFF5374 0.40 -2.2
915 - GFF5374 0.40 +1.1
915 - GFF5374 0.40 +0.9
1,016 + GFF5374 0.50 -1.7
1,016 + GFF5374 0.50 -0.4
1,016 + GFF5374 0.50 -0.7
1,016 + GFF5374 0.50 +0.3
1,016 + GFF5374 0.50 -2.2
1,016 + GFF5374 0.50 +0.7
1,017 - GFF5374 0.51 -0.8
1,017 - GFF5374 0.51 -2.7
1,079 + GFF5374 0.57 -0.6
1,079 + GFF5374 0.57 -0.8
1,079 + GFF5374 0.57 -1.8
1,079 + GFF5374 0.57 -0.8
1,079 + GFF5374 0.57 -2.1
1,079 + GFF5374 0.57 +1.4
1,079 + GFF5374 0.57 -1.7
1,079 + GFF5374 0.57 -2.7
1,080 - GFF5374 0.57 -0.6
1,080 - GFF5374 0.57 -1.2
1,080 - GFF5374 0.57 -0.2
1,080 - GFF5374 0.57 -1.7
1,080 - GFF5374 0.57 -2.3
1,080 - GFF5374 0.57 -0.9
1,137 - GFF5374 0.63 -2.6
1,137 - GFF5374 0.63 -0.0
1,137 - GFF5374 0.63 -0.7
1,137 - GFF5374 0.63 -1.1
1,280 + GFF5374 0.78 +3.4
1,280 + GFF5374 0.78 -0.6
1,280 + GFF5374 0.78 +0.5
1,280 + GFF5374 0.78 +0.9
1,280 + GFF5374 0.78 -1.3
1,280 + GFF5374 0.78 -1.2
1,280 + GFF5374 0.78 -0.2
1,280 + GFF5374 0.78 +0.1
1,280 + GFF5374 0.78 -2.8
1,280 + GFF5374 0.78 -0.6
1,281 - GFF5374 0.79 -1.9
1,281 - GFF5374 0.79 -0.2
1,281 - GFF5374 0.79 -2.5
1,281 - GFF5374 0.79 -2.8
1,281 - GFF5374 0.79 -1.2
1,319 + GFF5374 0.83 -2.1
1,319 + GFF5374 0.83 +1.3
1,319 + GFF5374 0.83 -1.2
1,319 + GFF5374 0.83 +0.3
1,319 + GFF5374 0.83 -1.3
1,320 - GFF5374 0.83 -0.8
1,320 - GFF5374 0.83 -0.6
1,320 - GFF5374 0.83 -0.1
1,320 - GFF5374 0.83 +1.5
1,320 - GFF5374 0.83 -0.6
1,926 + GFF5375 0.26 +1.5
1,926 + GFF5375 0.26 -3.8
1,926 + GFF5375 0.26 +2.4
1,926 + GFF5375 0.26 +0.7
1,926 + GFF5375 0.26 -0.2
1,926 + GFF5375 0.26 -1.8
1,926 + GFF5375 0.26 -0.5
1,927 - GFF5375 0.26 -1.5
1,927 - GFF5375 0.26 -3.0
1,927 - GFF5375 0.26 +1.8
1,927 - GFF5375 0.26 -2.7
1,927 - GFF5375 0.26 -0.2
2,178 + GFF5375 0.41 -0.8
2,178 + GFF5375 0.41 -1.8
2,178 + GFF5375 0.41 -0.3
2,178 + GFF5375 0.41 -1.4
2,178 + GFF5375 0.41 +0.7
2,179 - GFF5375 0.41 -1.4
2,179 - GFF5375 0.41 +2.2

Or see this region's nucleotide sequence