Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5198 and GFF5199 overlap by 4 nucleotides GFF5199 and GFF5200 are separated by 8 nucleotides
GFF5198 - ABC transporter, permease protein (cluster 2, ribose/xylose/arabinose/galactose), at 58,190 to 59,224
GFF5198
GFF5199 - Galactofuranose ABC transporter, permease protein 2, at 59,221 to 60,258
GFF5199
GFF5200 - L-arabonate dehydratase (EC 4.2.1.25), at 60,267 to 62,003
GFF5200
Position (kb) 59
60
61 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 58.431 kb on + strand, within GFF5198 at 58.670 kb on + strand, within GFF5198 at 58.671 kb on - strand, within GFF5198 at 58.674 kb on - strand, within GFF5198 at 58.674 kb on - strand, within GFF5198 at 58.674 kb on - strand, within GFF5198 at 58.871 kb on + strand, within GFF5198 at 58.872 kb on - strand, within GFF5198 at 59.073 kb on - strand, within GFF5198 at 59.073 kb on - strand, within GFF5198 at 59.073 kb on - strand, within GFF5198 at 59.178 kb on + strand at 59.179 kb on - strand at 59.179 kb on - strand at 59.314 kb on + strand at 59.695 kb on + strand, within GFF5199 at 59.696 kb on - strand, within GFF5199 at 59.870 kb on - strand, within GFF5199 at 59.992 kb on + strand, within GFF5199 at 59.992 kb on + strand, within GFF5199 at 59.992 kb on + strand, within GFF5199 at 59.992 kb on + strand, within GFF5199 at 59.993 kb on - strand, within GFF5199 at 60.091 kb on + strand, within GFF5199 at 60.091 kb on + strand, within GFF5199 at 60.262 kb on + strand at 60.327 kb on + strand at 60.676 kb on + strand, within GFF5200 at 60.948 kb on + strand, within GFF5200 at 60.948 kb on + strand, within GFF5200 at 61.218 kb on + strand, within GFF5200 at 61.219 kb on - strand, within GFF5200
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 58,431 + GFF5198 0.23 +0.1 58,670 + GFF5198 0.46 +1.4 58,671 - GFF5198 0.46 -0.6 58,674 - GFF5198 0.47 -2.6 58,674 - GFF5198 0.47 +3.4 58,674 - GFF5198 0.47 -2.2 58,871 + GFF5198 0.66 +0.4 58,872 - GFF5198 0.66 -0.5 59,073 - GFF5198 0.85 -0.1 59,073 - GFF5198 0.85 +2.5 59,073 - GFF5198 0.85 -2.2 59,178 + +0.4 59,179 - -3.0 59,179 - -0.5 59,314 + -2.1 59,695 + GFF5199 0.46 -2.8 59,696 - GFF5199 0.46 -2.3 59,870 - GFF5199 0.63 -2.8 59,992 + GFF5199 0.74 -0.1 59,992 + GFF5199 0.74 -0.2 59,992 + GFF5199 0.74 -1.6 59,992 + GFF5199 0.74 -0.5 59,993 - GFF5199 0.74 +0.0 60,091 + GFF5199 0.84 +0.1 60,091 + GFF5199 0.84 -0.3 60,262 + -2.7 60,327 + +1.5 60,676 + GFF5200 0.24 -3.3 60,948 + GFF5200 0.39 -1.3 60,948 + GFF5200 0.39 -0.6 61,218 + GFF5200 0.55 +3.0 61,219 - GFF5200 0.55 +1.4
Or see this region's nucleotide sequence