Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5185 and GFF5186 overlap by 4 nucleotides GFF5186 and GFF5187 are separated by 27 nucleotides GFF5187 and GFF5188 are separated by 778 nucleotides
GFF5185 - FIG00732904: hypothetical protein, at 38,479 to 43,239
GFF5185
GFF5186 - hypothetical protein, at 43,236 to 44,177
GFF5186
GFF5187 - Aldose 1-epimerase (EC 5.1.3.3), at 44,205 to 45,284
GFF5187
GFF5188 - no description, at 46,063 to 47,025
GFF5188
Position (kb) 44
45
46 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 43.235 kb on + strand at 43.235 kb on + strand at 43.235 kb on + strand at 43.235 kb on + strand at 43.236 kb on - strand at 43.236 kb on - strand at 43.236 kb on - strand at 43.236 kb on - strand at 43.236 kb on - strand at 43.236 kb on - strand at 43.236 kb on - strand at 43.419 kb on + strand, within GFF5186 at 43.419 kb on + strand, within GFF5186 at 43.420 kb on - strand, within GFF5186 at 43.650 kb on + strand, within GFF5186 at 43.650 kb on + strand, within GFF5186 at 43.651 kb on - strand, within GFF5186 at 43.651 kb on - strand, within GFF5186 at 43.651 kb on - strand, within GFF5186 at 43.929 kb on + strand, within GFF5186 at 43.929 kb on + strand, within GFF5186 at 43.930 kb on - strand, within GFF5186 at 43.930 kb on - strand, within GFF5186 at 44.106 kb on + strand at 44.200 kb on + strand at 44.268 kb on + strand at 44.400 kb on + strand, within GFF5187 at 44.401 kb on - strand, within GFF5187 at 44.619 kb on + strand, within GFF5187 at 44.619 kb on + strand, within GFF5187 at 44.619 kb on + strand, within GFF5187 at 44.676 kb on + strand, within GFF5187 at 44.716 kb on - strand, within GFF5187 at 44.766 kb on + strand, within GFF5187 at 44.766 kb on + strand, within GFF5187 at 44.767 kb on - strand, within GFF5187 at 44.767 kb on - strand, within GFF5187 at 44.835 kb on + strand, within GFF5187 at 44.913 kb on - strand, within GFF5187 at 44.970 kb on + strand, within GFF5187 at 45.097 kb on - strand, within GFF5187 at 45.499 kb on + strand at 45.500 kb on - strand at 45.500 kb on - strand at 45.500 kb on - strand at 45.658 kb on + strand at 45.703 kb on + strand at 45.703 kb on + strand at 45.704 kb on - strand at 45.704 kb on - strand at 45.826 kb on + strand at 45.826 kb on + strand at 45.827 kb on - strand at 45.827 kb on - strand at 45.827 kb on - strand at 45.827 kb on - strand at 45.827 kb on - strand at 45.827 kb on - strand at 45.827 kb on - strand at 45.880 kb on + strand at 45.881 kb on - strand at 45.952 kb on + strand at 45.952 kb on + strand at 45.952 kb on + strand at 45.952 kb on + strand at 45.952 kb on + strand at 45.952 kb on + strand at 45.952 kb on + strand at 45.952 kb on + strand at 45.952 kb on + strand at 45.952 kb on + strand at 45.952 kb on + strand at 45.952 kb on + strand at 45.953 kb on - strand at 45.953 kb on - strand at 45.953 kb on - strand at 45.953 kb on - strand at 45.953 kb on - strand at 45.956 kb on + strand at 45.956 kb on + strand at 45.956 kb on + strand at 45.957 kb on - strand at 45.957 kb on - strand at 46.026 kb on + strand at 46.027 kb on - strand at 46.030 kb on + strand at 46.109 kb on + strand at 46.109 kb on + strand at 46.163 kb on + strand, within GFF5188
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 43,235 + +0.0 43,235 + -2.4 43,235 + -0.6 43,235 + -2.5 43,236 - -0.7 43,236 - +0.8 43,236 - -0.5 43,236 - -0.2 43,236 - +0.5 43,236 - +0.1 43,236 - -1.6 43,419 + GFF5186 0.19 +0.6 43,419 + GFF5186 0.19 +0.1 43,420 - GFF5186 0.20 -1.9 43,650 + GFF5186 0.44 -0.9 43,650 + GFF5186 0.44 -0.2 43,651 - GFF5186 0.44 -1.6 43,651 - GFF5186 0.44 -2.0 43,651 - GFF5186 0.44 +1.4 43,929 + GFF5186 0.74 +1.8 43,929 + GFF5186 0.74 -2.5 43,930 - GFF5186 0.74 -0.5 43,930 - GFF5186 0.74 -3.9 44,106 + -1.6 44,200 + -1.3 44,268 + +1.3 44,400 + GFF5187 0.18 -0.9 44,401 - GFF5187 0.18 -0.2 44,619 + GFF5187 0.38 -2.7 44,619 + GFF5187 0.38 -0.7 44,619 + GFF5187 0.38 +0.8 44,676 + GFF5187 0.44 -2.8 44,716 - GFF5187 0.47 -0.2 44,766 + GFF5187 0.52 -2.5 44,766 + GFF5187 0.52 -1.3 44,767 - GFF5187 0.52 -2.9 44,767 - GFF5187 0.52 -0.7 44,835 + GFF5187 0.58 -0.9 44,913 - GFF5187 0.66 -2.0 44,970 + GFF5187 0.71 +1.5 45,097 - GFF5187 0.83 +0.4 45,499 + +0.6 45,500 - -0.9 45,500 - -0.4 45,500 - +2.5 45,658 + -0.9 45,703 + +0.5 45,703 + -0.1 45,704 - -0.2 45,704 - -0.6 45,826 + -1.1 45,826 + +1.6 45,827 - +1.3 45,827 - -1.3 45,827 - -0.8 45,827 - -1.1 45,827 - -1.7 45,827 - -1.2 45,827 - +0.7 45,880 + +1.7 45,881 - +0.8 45,952 + -2.8 45,952 + +0.5 45,952 + +0.5 45,952 + +0.5 45,952 + -1.1 45,952 + -0.5 45,952 + -1.5 45,952 + +0.9 45,952 + +1.1 45,952 + +2.2 45,952 + -0.5 45,952 + -0.7 45,953 - -0.8 45,953 - +4.3 45,953 - -1.9 45,953 - -1.5 45,953 - -2.8 45,956 + +0.2 45,956 + -1.3 45,956 + +1.1 45,957 - -1.5 45,957 - +0.4 46,026 + -2.3 46,027 - +0.4 46,030 + +0.7 46,109 + -0.1 46,109 + -2.2 46,163 + GFF5188 0.10 -0.7
Or see this region's nucleotide sequence