Strain Fitness in Variovorax sp. SCN45 around GFF5177

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
30,076	-		GFF5175	0.79	-1.3
30,076	-		GFF5175	0.79	+1.8
30,076	-		GFF5175	0.79	+1.4
30,076	-		GFF5175	0.79	+2.1
30,126	+		GFF5175	0.81	+1.2
30,126	+		GFF5175	0.81	+2.6
30,127	-		GFF5175	0.81	-1.3
30,127	-		GFF5175	0.81	-0.9
30,186	+		GFF5175	0.82	-0.9
30,187	-		GFF5175	0.82	-1.5
30,187	-		GFF5175	0.82	-0.9
30,573	+				+1.1
30,574	-				-1.1
30,574	-				-0.5
30,574	-				+1.1
30,865	+				-1.8
30,865	+				+1.0
30,865	+				-0.0
30,866	-				-2.5
30,866	-				-0.5
31,113	+				+1.4
31,114	-		GFF5177	0.10	+2.3
31,114	-		GFF5177	0.10	-0.2
31,114	-		GFF5177	0.10	+0.2
31,155	+		GFF5177	0.14	-1.2
31,155	+		GFF5177	0.14	-1.1
31,155	+		GFF5177	0.14	+2.2
31,155	+		GFF5177	0.14	-1.2
31,155	+		GFF5177	0.14	+2.1
31,155	+		GFF5177	0.14	+0.1
31,155	+		GFF5177	0.14	-1.3
31,156	-		GFF5177	0.14	+1.4
31,156	-		GFF5177	0.14	-0.4
31,156	-		GFF5177	0.14	-2.3
31,156	-		GFF5177	0.14	+0.1
31,156	-		GFF5177	0.14	-1.4
31,156	-		GFF5177	0.14	+0.1
31,156	-		GFF5177	0.14	-2.3
31,156	-		GFF5177	0.14	+1.1
31,156	-		GFF5177	0.14	-2.1
31,158	+		GFF5177	0.14	-1.3
31,158	+		GFF5177	0.14	-1.5
31,158	+		GFF5177	0.14	-1.8
31,158	+		GFF5177	0.14	+0.0
31,158	+		GFF5177	0.14	-1.7
31,158	+		GFF5177	0.14	+1.8
31,158	+		GFF5177	0.14	+0.2
31,158	+		GFF5177	0.14	+2.4
31,158	+		GFF5177	0.14	+1.5
31,158	+		GFF5177	0.14	+1.1
31,158	+		GFF5177	0.14	+1.3
31,158	+		GFF5177	0.14	+0.4
31,158	+		GFF5177	0.14	-0.7
31,158	+		GFF5177	0.14	-2.3
31,158	+		GFF5177	0.14	-0.2
31,158	+		GFF5177	0.14	-3.8
31,158	+		GFF5177	0.14	-0.2
31,159	-		GFF5177	0.14	+0.7
31,159	-		GFF5177	0.14	+0.2
31,159	-		GFF5177	0.14	-0.9
31,159	-		GFF5177	0.14	-1.8
31,159	-		GFF5177	0.14	-0.8
31,159	-		GFF5177	0.14	+0.5
31,159	-		GFF5177	0.14	-1.4
31,159	-		GFF5177	0.14	+0.1
31,560	+		GFF5177	0.50	-3.3
31,560	+		GFF5177	0.50	+3.6
31,560	+		GFF5177	0.50	+1.2
31,560	+		GFF5177	0.50	-2.0
31,560	+		GFF5177	0.50	+0.5
31,560	+		GFF5177	0.50	+0.2
31,560	+		GFF5177	0.50	-2.9
31,560	+		GFF5177	0.50	+1.7
31,561	-		GFF5177	0.50	-1.0
31,561	-		GFF5177	0.50	-1.2
31,561	-		GFF5177	0.50	+2.1
31,605	+		GFF5177	0.54	+1.3
31,605	+		GFF5177	0.54	-0.5
31,605	+		GFF5177	0.54	-0.4
31,606	-		GFF5177	0.54	-0.5
31,606	-		GFF5177	0.54	-1.2
31,606	-		GFF5177	0.54	-0.7
31,606	-		GFF5177	0.54	+0.7
31,606	-		GFF5177	0.54	+1.0
31,606	-		GFF5177	0.54	-0.9
31,606	-		GFF5177	0.54	-0.1
31,635	+		GFF5177	0.57	+1.0
31,635	+		GFF5177	0.57	-2.9
31,635	+		GFF5177	0.57	-1.7
31,636	-		GFF5177	0.57	+0.1
31,636	-		GFF5177	0.57	-0.7
31,636	-		GFF5177	0.57	-0.1
31,640	-		GFF5177	0.57	+0.1
31,785	+		GFF5177	0.70	+0.7
31,785	+		GFF5177	0.70	+2.4
31,785	+		GFF5177	0.70	+1.4
31,786	-		GFF5177	0.70	-1.7
31,786	-		GFF5177	0.70	-2.5
31,845	+		GFF5177	0.76	+0.5
31,845	+		GFF5177	0.76	+0.1
31,845	+		GFF5177	0.76	+2.3
31,845	+		GFF5177	0.76	-0.5
31,845	+		GFF5177	0.76	+1.1
31,866	+		GFF5177	0.77	+2.9
31,866	+		GFF5177	0.77	+1.3
31,866	+		GFF5177	0.77	-1.5
31,866	+		GFF5177	0.77	-1.2
31,866	+		GFF5177	0.77	-1.1
31,867	-		GFF5177	0.78	+0.5
31,867	-		GFF5177	0.78	+0.1
31,867	-		GFF5177	0.78	-1.6
31,867	-		GFF5177	0.78	-0.3
31,867	-		GFF5177	0.78	-2.6
31,867	-		GFF5177	0.78	-1.1
31,867	-		GFF5177	0.78	-0.7
31,908	+		GFF5177	0.81	+1.4
31,908	+		GFF5177	0.81	+0.2
31,908	+		GFF5177	0.81	-0.5
31,908	+		GFF5177	0.81	-0.7
31,909	-		GFF5177	0.81	-0.8
31,909	-		GFF5177	0.81	+0.9
31,909	-		GFF5177	0.81	-0.0
31,909	-		GFF5177	0.81	+0.5
31,909	-		GFF5177	0.81	+0.1
31,909	-		GFF5177	0.81	-1.9
31,909	-		GFF5177	0.81	-1.0
31,909	-		GFF5177	0.81	+0.3
31,911	+		GFF5177	0.81	-0.8
31,912	-		GFF5177	0.82	+0.9
31,912	-		GFF5177	0.82	+1.3
31,980	+		GFF5177	0.88	-3.1
31,981	-		GFF5177	0.88	-1.1
31,981	-		GFF5177	0.88	+1.1
31,981	-		GFF5177	0.88	+1.2
31,981	-		GFF5177	0.88	-1.5
31,981	-		GFF5177	0.88	-0.4
31,989	+		GFF5177	0.88	+0.6
31,989	+		GFF5177	0.88	+1.1
31,990	-		GFF5177	0.89	+0.8
32,129	+				-1.2
32,130	-				+0.0
32,469	+		GFF5178	0.49	-0.7
32,469	+		GFF5178	0.49	-1.4
32,469	+		GFF5178	0.49	-2.3
32,469	+		GFF5178	0.49	-2.6
32,469	+		GFF5178	0.49	-0.2
32,469	+		GFF5178	0.49	+0.3
32,470	-		GFF5178	0.49	+0.2
32,470	-		GFF5178	0.49	-0.3
32,470	-		GFF5178	0.49	+1.9
32,470	-		GFF5178	0.49	+0.5
32,470	-		GFF5178	0.49	-1.9
32,471	+		GFF5178	0.49	-1.6
32,471	+		GFF5178	0.49	+0.5
32,471	+		GFF5178	0.49	-2.1
32,471	+		GFF5178	0.49	+0.5
32,471	+		GFF5178	0.49	+1.1
32,471	+		GFF5178	0.49	+0.2
32,471	+		GFF5178	0.49	+0.4
32,471	+		GFF5178	0.49	-0.6
32,471	+		GFF5178	0.49	-3.0
32,471	+		GFF5178	0.49	-2.5
32,471	+		GFF5178	0.49	+1.2
32,471	+		GFF5178	0.49	-0.9
32,471	+		GFF5178	0.49	-0.5
32,471	+		GFF5178	0.49	-3.0
32,471	+		GFF5178	0.49	-1.3
32,471	+		GFF5178	0.49	+0.6
32,472	-		GFF5178	0.49	-3.9
32,472	-		GFF5178	0.49	+4.7
32,472	-		GFF5178	0.49	+1.8
32,556	+		GFF5178	0.63	-1.7
32,556	+		GFF5178	0.63	+1.6
32,556	+		GFF5178	0.63	-0.4
32,556	+		GFF5178	0.63	+0.8
32,557	-		GFF5178	0.63	+0.2
32,557	-		GFF5178	0.63	+0.0
32,557	-		GFF5178	0.63	-0.9
32,557	-		GFF5178	0.63	-0.7
32,697	+		GFF5178	0.87	-0.8
32,697	+		GFF5178	0.87	+0.9
32,698	-		GFF5178	0.87	+0.1
32,698	-		GFF5178	0.87	-0.5
32,698	-		GFF5178	0.87	-2.1
32,727	+				+1.1
32,727	+				+1.9
32,728	-				-2.1