Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5135 and GFF5136 are separated by 87 nucleotides GFF5136 and GFF5137 are separated by 1 nucleotides GFF5137 and GFF5138 are separated by 106 nucleotides GFF5138 and GFF5139 are separated by 104 nucleotides
GFF5135 - DNA repair exonuclease family protein YhaO, at 237,153 to 238,409
GFF5135
GFF5136 - Putative DNA helicase, at 238,497 to 243,143
GFF5136
GFF5137 - no description, at 243,145 to 243,342
GFF5137
GFF5138 - no description, at 243,449 to 243,592
GFF5138
GFF5139 - no description, at 243,697 to 244,518
GFF5139
Position (kb) 238
239
240
241
242
243
244 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 237.680 kb on - strand, within GFF5135 at 237.680 kb on - strand, within GFF5135 at 237.814 kb on + strand, within GFF5135 at 237.815 kb on - strand, within GFF5135 at 237.815 kb on - strand, within GFF5135 at 237.841 kb on + strand, within GFF5135 at 237.848 kb on - strand, within GFF5135 at 237.904 kb on + strand, within GFF5135 at 237.904 kb on + strand, within GFF5135 at 237.904 kb on + strand, within GFF5135 at 237.904 kb on + strand, within GFF5135 at 237.904 kb on + strand, within GFF5135 at 237.904 kb on + strand, within GFF5135 at 237.904 kb on + strand, within GFF5135 at 237.904 kb on + strand, within GFF5135 at 237.905 kb on - strand, within GFF5135 at 237.905 kb on - strand, within GFF5135 at 237.921 kb on - strand, within GFF5135 at 237.940 kb on + strand, within GFF5135 at 237.940 kb on + strand, within GFF5135 at 237.940 kb on + strand, within GFF5135 at 237.940 kb on + strand, within GFF5135 at 237.941 kb on - strand, within GFF5135 at 237.943 kb on + strand, within GFF5135 at 238.207 kb on + strand, within GFF5135 at 238.207 kb on + strand, within GFF5135 at 238.207 kb on + strand, within GFF5135 at 238.342 kb on + strand at 238.342 kb on + strand at 238.438 kb on + strand at 238.438 kb on + strand at 238.439 kb on - strand at 238.439 kb on - strand at 238.442 kb on + strand at 238.442 kb on + strand at 238.442 kb on + strand at 238.443 kb on - strand at 238.443 kb on - strand at 238.443 kb on - strand at 238.512 kb on + strand at 238.551 kb on - strand at 238.837 kb on + strand at 238.838 kb on - strand at 238.838 kb on - strand at 238.940 kb on - strand at 238.963 kb on + strand, within GFF5136 at 238.963 kb on + strand, within GFF5136 at 238.963 kb on + strand, within GFF5136 at 238.964 kb on - strand, within GFF5136 at 238.964 kb on - strand, within GFF5136 at 238.964 kb on - strand, within GFF5136 at 239.119 kb on + strand, within GFF5136 at 239.119 kb on + strand, within GFF5136 at 239.120 kb on - strand, within GFF5136 at 239.120 kb on - strand, within GFF5136 at 239.120 kb on - strand, within GFF5136 at 239.120 kb on - strand, within GFF5136 at 239.120 kb on - strand, within GFF5136 at 239.551 kb on + strand, within GFF5136 at 239.551 kb on + strand, within GFF5136 at 239.551 kb on + strand, within GFF5136 at 239.552 kb on - strand, within GFF5136 at 239.552 kb on - strand, within GFF5136 at 239.647 kb on + strand, within GFF5136 at 239.648 kb on - strand, within GFF5136 at 239.667 kb on + strand, within GFF5136 at 239.668 kb on - strand, within GFF5136 at 239.681 kb on - strand, within GFF5136 at 240.019 kb on + strand, within GFF5136 at 240.019 kb on + strand, within GFF5136 at 240.019 kb on + strand, within GFF5136 at 240.019 kb on + strand, within GFF5136 at 240.020 kb on - strand, within GFF5136 at 240.020 kb on - strand, within GFF5136 at 240.020 kb on - strand, within GFF5136 at 240.650 kb on + strand, within GFF5136 at 240.820 kb on + strand, within GFF5136 at 240.820 kb on + strand, within GFF5136 at 240.820 kb on + strand, within GFF5136 at 241.427 kb on + strand, within GFF5136 at 241.849 kb on + strand, within GFF5136 at 241.850 kb on - strand, within GFF5136 at 241.850 kb on - strand, within GFF5136 at 241.963 kb on + strand, within GFF5136 at 241.963 kb on + strand, within GFF5136 at 241.963 kb on + strand, within GFF5136 at 241.964 kb on - strand, within GFF5136 at 241.964 kb on - strand, within GFF5136 at 241.964 kb on - strand, within GFF5136 at 242.254 kb on + strand, within GFF5136 at 242.551 kb on + strand, within GFF5136 at 242.552 kb on - strand, within GFF5136 at 242.555 kb on + strand, within GFF5136 at 242.555 kb on + strand, within GFF5136 at 242.555 kb on + strand, within GFF5136 at 242.555 kb on + strand, within GFF5136 at 242.555 kb on + strand, within GFF5136 at 242.555 kb on + strand, within GFF5136 at 242.555 kb on + strand, within GFF5136 at 242.555 kb on + strand, within GFF5136 at 242.556 kb on - strand, within GFF5136 at 242.556 kb on - strand, within GFF5136 at 242.556 kb on - strand, within GFF5136 at 242.556 kb on - strand, within GFF5136 at 242.634 kb on + strand, within GFF5136 at 242.635 kb on - strand, within GFF5136 at 242.653 kb on + strand, within GFF5136 at 242.654 kb on - strand, within GFF5136 at 242.654 kb on - strand, within GFF5136 at 242.716 kb on + strand at 242.717 kb on - strand at 242.717 kb on - strand at 243.039 kb on + strand at 243.040 kb on - strand at 243.040 kb on - strand at 243.040 kb on - strand at 243.106 kb on + strand at 243.106 kb on + strand at 243.106 kb on + strand at 243.107 kb on - strand at 243.107 kb on - strand at 243.322 kb on + strand, within GFF5137 at 243.322 kb on + strand, within GFF5137 at 243.323 kb on - strand at 243.323 kb on - strand at 243.323 kb on - strand at 243.323 kb on - strand at 243.404 kb on + strand at 243.404 kb on + strand at 243.405 kb on - strand at 243.405 kb on - strand at 243.406 kb on + strand at 243.407 kb on - strand at 243.413 kb on + strand at 243.414 kb on - strand at 243.419 kb on + strand at 243.420 kb on - strand at 243.420 kb on - strand at 243.420 kb on - strand at 243.420 kb on - strand at 243.420 kb on - strand at 243.426 kb on + strand at 243.427 kb on - strand at 243.427 kb on - strand at 243.427 kb on - strand at 243.455 kb on + strand at 243.456 kb on - strand at 243.610 kb on - strand at 243.610 kb on - strand at 243.731 kb on + strand at 243.731 kb on + strand at 243.731 kb on + strand at 243.731 kb on + strand at 243.731 kb on + strand at 243.732 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 237,680 - GFF5135 0.42 -2.9 237,680 - GFF5135 0.42 -0.3 237,814 + GFF5135 0.53 -2.8 237,815 - GFF5135 0.53 -0.4 237,815 - GFF5135 0.53 +0.1 237,841 + GFF5135 0.55 +0.5 237,848 - GFF5135 0.55 +0.9 237,904 + GFF5135 0.60 +0.0 237,904 + GFF5135 0.60 +0.3 237,904 + GFF5135 0.60 +2.3 237,904 + GFF5135 0.60 -1.5 237,904 + GFF5135 0.60 -0.6 237,904 + GFF5135 0.60 -2.0 237,904 + GFF5135 0.60 +1.1 237,904 + GFF5135 0.60 +0.1 237,905 - GFF5135 0.60 -0.3 237,905 - GFF5135 0.60 +1.2 237,921 - GFF5135 0.61 +0.1 237,940 + GFF5135 0.63 -0.3 237,940 + GFF5135 0.63 -1.0 237,940 + GFF5135 0.63 -1.0 237,940 + GFF5135 0.63 -1.9 237,941 - GFF5135 0.63 -2.9 237,943 + GFF5135 0.63 +0.3 238,207 + GFF5135 0.84 +0.6 238,207 + GFF5135 0.84 +1.4 238,207 + GFF5135 0.84 -0.7 238,342 + -2.8 238,342 + -0.8 238,438 + -1.2 238,438 + +1.6 238,439 - +1.6 238,439 - -2.5 238,442 + -1.0 238,442 + -1.4 238,442 + -1.2 238,443 - -2.0 238,443 - -1.0 238,443 - -1.9 238,512 + -0.4 238,551 - -0.7 238,837 + +2.8 238,838 - +0.4 238,838 - +1.5 238,940 - -3.6 238,963 + GFF5136 0.10 -0.1 238,963 + GFF5136 0.10 -3.4 238,963 + GFF5136 0.10 -0.3 238,964 - GFF5136 0.10 -0.5 238,964 - GFF5136 0.10 -0.2 238,964 - GFF5136 0.10 -0.7 239,119 + GFF5136 0.13 -1.1 239,119 + GFF5136 0.13 -0.7 239,120 - GFF5136 0.13 -2.0 239,120 - GFF5136 0.13 +0.1 239,120 - GFF5136 0.13 +0.3 239,120 - GFF5136 0.13 -0.9 239,120 - GFF5136 0.13 -0.2 239,551 + GFF5136 0.23 +0.0 239,551 + GFF5136 0.23 -2.0 239,551 + GFF5136 0.23 -1.4 239,552 - GFF5136 0.23 -2.5 239,552 - GFF5136 0.23 +1.4 239,647 + GFF5136 0.25 +0.3 239,648 - GFF5136 0.25 -2.0 239,667 + GFF5136 0.25 -1.4 239,668 - GFF5136 0.25 +1.1 239,681 - GFF5136 0.25 +0.2 240,019 + GFF5136 0.33 -0.9 240,019 + GFF5136 0.33 -1.7 240,019 + GFF5136 0.33 -3.1 240,019 + GFF5136 0.33 -2.6 240,020 - GFF5136 0.33 +0.1 240,020 - GFF5136 0.33 -0.8 240,020 - GFF5136 0.33 -1.5 240,650 + GFF5136 0.46 -2.8 240,820 + GFF5136 0.50 +1.8 240,820 + GFF5136 0.50 -3.1 240,820 + GFF5136 0.50 -1.9 241,427 + GFF5136 0.63 -1.5 241,849 + GFF5136 0.72 -1.2 241,850 - GFF5136 0.72 -3.2 241,850 - GFF5136 0.72 +2.6 241,963 + GFF5136 0.75 -1.0 241,963 + GFF5136 0.75 -1.7 241,963 + GFF5136 0.75 +0.5 241,964 - GFF5136 0.75 -1.0 241,964 - GFF5136 0.75 +1.6 241,964 - GFF5136 0.75 +0.2 242,254 + GFF5136 0.81 +0.2 242,551 + GFF5136 0.87 -0.7 242,552 - GFF5136 0.87 -1.6 242,555 + GFF5136 0.87 +0.6 242,555 + GFF5136 0.87 -2.0 242,555 + GFF5136 0.87 -1.2 242,555 + GFF5136 0.87 +0.1 242,555 + GFF5136 0.87 +0.3 242,555 + GFF5136 0.87 +2.3 242,555 + GFF5136 0.87 -1.7 242,555 + GFF5136 0.87 +1.2 242,556 - GFF5136 0.87 -0.2 242,556 - GFF5136 0.87 -0.6 242,556 - GFF5136 0.87 -2.2 242,556 - GFF5136 0.87 -0.9 242,634 + GFF5136 0.89 -0.5 242,635 - GFF5136 0.89 -2.6 242,653 + GFF5136 0.89 -1.8 242,654 - GFF5136 0.89 -1.3 242,654 - GFF5136 0.89 -1.8 242,716 + -1.3 242,717 - -0.4 242,717 - +3.0 243,039 + +1.0 243,040 - -1.7 243,040 - +2.7 243,040 - +1.1 243,106 + +0.9 243,106 + +4.0 243,106 + +0.9 243,107 - +0.0 243,107 - -0.4 243,322 + GFF5137 0.89 -0.5 243,322 + GFF5137 0.89 -0.1 243,323 - -1.0 243,323 - +0.9 243,323 - +1.4 243,323 - +0.2 243,404 + +2.6 243,404 + +1.6 243,405 - -0.6 243,405 - -0.5 243,406 + -1.9 243,407 - -0.7 243,413 + -1.9 243,414 - -0.1 243,419 + -1.1 243,420 - -3.0 243,420 - -0.2 243,420 - +1.1 243,420 - -0.6 243,420 - -0.0 243,426 + +0.9 243,427 - +0.2 243,427 - -1.8 243,427 - -1.5 243,455 + -1.0 243,456 - +0.3 243,610 - +0.9 243,610 - -1.7 243,731 + +0.3 243,731 + -0.5 243,731 + +3.0 243,731 + -1.9 243,731 + -1.4 243,732 - -0.2
Or see this region's nucleotide sequence