Strain Fitness in Variovorax sp. SCN45 around GFF4996

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
94,051	+		GFF4995	0.20	+1.4
94,051	+		GFF4995	0.20	+1.4
94,051	+		GFF4995	0.20	-0.5
94,051	+		GFF4995	0.20	+1.9
94,051	+		GFF4995	0.20	+0.2
94,051	+		GFF4995	0.20	-2.3
94,051	+		GFF4995	0.20	-0.5
94,051	+		GFF4995	0.20	-1.8
94,051	+		GFF4995	0.20	+3.7
94,051	+		GFF4995	0.20	-1.6
94,051	+		GFF4995	0.20	+0.9
94,051	+		GFF4995	0.20	+0.7
94,051	+		GFF4995	0.20	+0.2
94,051	+		GFF4995	0.20	-0.8
94,051	+		GFF4995	0.20	-1.2
94,052	-		GFF4995	0.20	-1.9
94,052	-		GFF4995	0.20	+2.5
94,052	-		GFF4995	0.20	-1.4
94,052	-		GFF4995	0.20	+2.8
94,052	-		GFF4995	0.20	-0.0
94,052	-		GFF4995	0.20	-0.3
94,052	-		GFF4995	0.20	-1.5
94,052	-		GFF4995	0.20	-0.1
94,052	-		GFF4995	0.20	+2.3
94,052	-		GFF4995	0.20	-2.4
94,072	+		GFF4995	0.22	-0.9
94,072	+		GFF4995	0.22	+1.6
94,073	-		GFF4995	0.23	-0.5
94,073	-		GFF4995	0.23	-0.5
94,146	+		GFF4995	0.30	-1.9
94,146	+		GFF4995	0.30	+0.4
94,147	-		GFF4995	0.31	-0.9
94,147	-		GFF4995	0.31	-0.7
94,147	-		GFF4995	0.31	-0.1
94,237	+		GFF4995	0.40	+0.6
94,237	+		GFF4995	0.40	+0.7
94,237	+		GFF4995	0.40	+1.9
94,237	+		GFF4995	0.40	+1.7
94,237	+		GFF4995	0.40	+0.1
94,237	+		GFF4995	0.40	-0.1
94,237	+		GFF4995	0.40	+1.3
94,237	+		GFF4995	0.40	+1.7
94,237	+		GFF4995	0.40	+0.3
94,237	+		GFF4995	0.40	-1.8
94,237	+		GFF4995	0.40	-0.5
94,237	+		GFF4995	0.40	-1.4
94,237	+		GFF4995	0.40	-3.2
94,237	+		GFF4995	0.40	-1.4
94,237	+		GFF4995	0.40	-0.1
94,237	+		GFF4995	0.40	-0.8
94,237	+		GFF4995	0.40	-1.0
94,237	+		GFF4995	0.40	-0.2
94,237	+		GFF4995	0.40	+1.0
94,238	-		GFF4995	0.41	-0.0
94,238	-		GFF4995	0.41	-0.6
94,238	-		GFF4995	0.41	-1.4
94,238	-		GFF4995	0.41	-1.4
94,238	-		GFF4995	0.41	-2.1
94,238	-		GFF4995	0.41	-0.8
94,238	-		GFF4995	0.41	+1.4
94,238	-		GFF4995	0.41	-0.8
94,238	-		GFF4995	0.41	-2.9
94,238	-		GFF4995	0.41	+0.8
94,238	-		GFF4995	0.41	-2.6
94,238	-		GFF4995	0.41	+1.8
94,238	-		GFF4995	0.41	-2.0
94,238	-		GFF4995	0.41	-1.5
94,238	-		GFF4995	0.41	+0.3
94,238	-		GFF4995	0.41	-1.2
94,238	-		GFF4995	0.41	+2.3
94,238	-		GFF4995	0.41	+0.7
94,238	-		GFF4995	0.41	-0.2
94,238	-		GFF4995	0.41	+0.1
94,238	-		GFF4995	0.41	+0.7
94,238	-		GFF4995	0.41	+0.5
94,238	-		GFF4995	0.41	-0.1
94,238	-		GFF4995	0.41	+2.7
94,238	-		GFF4995	0.41	-1.0
94,238	-		GFF4995	0.41	-0.4
94,238	-		GFF4995	0.41	-2.7
94,411	+		GFF4995	0.59	-0.6
94,411	+		GFF4995	0.59	-0.5
94,412	-		GFF4995	0.60	-1.2
94,412	-		GFF4995	0.60	+1.2
94,412	-		GFF4995	0.60	+0.5
94,432	+		GFF4995	0.62	-1.4
94,432	+		GFF4995	0.62	-0.8
94,432	+		GFF4995	0.62	-1.3
94,433	-		GFF4995	0.62	+0.3
94,433	-		GFF4995	0.62	-0.0
94,433	-		GFF4995	0.62	+2.3
94,433	-		GFF4995	0.62	-1.3
94,456	+		GFF4995	0.64	-2.2
94,456	+		GFF4995	0.64	-0.1
94,456	+		GFF4995	0.64	-1.4
94,456	+		GFF4995	0.64	-1.9
94,456	+		GFF4995	0.64	-2.2
94,456	+		GFF4995	0.64	+0.5
94,456	+		GFF4995	0.64	-1.5
94,456	+		GFF4995	0.64	-0.0
94,456	+		GFF4995	0.64	+1.3
94,456	+		GFF4995	0.64	-0.0
94,456	+		GFF4995	0.64	-3.4
94,456	+		GFF4995	0.64	-1.5
94,457	-		GFF4995	0.64	-1.4
94,457	-		GFF4995	0.64	+2.3
94,457	-		GFF4995	0.64	+3.3
94,457	-		GFF4995	0.64	+1.8
94,457	-		GFF4995	0.64	-0.0
94,457	-		GFF4995	0.64	-1.6
94,457	-		GFF4995	0.64	-0.0
94,457	-		GFF4995	0.64	-0.9
94,520	-		GFF4995	0.71	+2.1
94,520	-		GFF4995	0.71	+1.0
94,520	-		GFF4995	0.71	-1.6
94,520	-		GFF4995	0.71	-1.4
94,567	+		GFF4995	0.77	-1.9
94,567	+		GFF4995	0.77	-1.7
94,567	+		GFF4995	0.77	-0.2
94,567	+		GFF4995	0.77	-0.5
94,567	+		GFF4995	0.77	-0.2
94,567	+		GFF4995	0.77	+2.1
94,567	+		GFF4995	0.77	-0.7
94,567	+		GFF4995	0.77	+0.2
94,568	-		GFF4995	0.77	-1.4
94,568	-		GFF4995	0.77	-2.6
94,568	-		GFF4995	0.77	-2.0
94,568	-		GFF4995	0.77	-0.4
94,568	-		GFF4995	0.77	-1.1
94,568	-		GFF4995	0.77	-2.0
94,568	-		GFF4995	0.77	-0.7
94,674	+		GFF4995	0.88	-0.9
94,674	+		GFF4995	0.88	+0.3
94,674	+		GFF4995	0.88	-0.1
94,674	+		GFF4995	0.88	-0.0
94,675	-		GFF4995	0.88	-0.4
94,678	+		GFF4995	0.89	-2.3
94,678	+		GFF4995	0.89	-2.0
94,678	+		GFF4995	0.89	-1.5
94,678	+		GFF4995	0.89	-0.9
94,678	+		GFF4995	0.89	-0.5
94,678	+		GFF4995	0.89	-0.3
94,678	+		GFF4995	0.89	-1.3
94,678	+		GFF4995	0.89	-0.0
94,678	+		GFF4995	0.89	-1.1
94,679	-		GFF4995	0.89	+1.3
94,679	-		GFF4995	0.89	-1.4
94,679	-		GFF4995	0.89	+0.5
94,679	-		GFF4995	0.89	+0.4
94,841	+				+0.8
94,841	+				+1.3
94,975	+		GFF4996	0.54	-0.9
94,975	+		GFF4996	0.54	+1.5
94,975	+		GFF4996	0.54	+0.3
94,975	+		GFF4996	0.54	-0.3
94,975	+		GFF4996	0.54	-1.0
94,975	+		GFF4996	0.54	+0.9
94,975	+		GFF4996	0.54	+1.7
94,976	-		GFF4996	0.54	-1.3
94,976	-		GFF4996	0.54	+1.8
94,976	-		GFF4996	0.54	+0.1
94,976	-		GFF4996	0.54	-1.4
94,976	-		GFF4996	0.54	-0.6
94,976	-		GFF4996	0.54	+0.5
94,976	-		GFF4996	0.54	-0.6
94,976	-		GFF4996	0.54	-2.1
95,069	+				+2.0
95,069	+				+0.2
95,069	+				-0.5
95,069	+				-1.2
95,069	+				-0.9
95,069	+				-0.3
95,069	+				-1.1
95,069	+				-0.7
95,070	-				-0.1
95,070	-				-1.3
95,070	-				-1.0
95,070	-				-0.3
95,070	-				-1.0
95,070	-				-0.8
95,070	-				-0.7
95,113	+				-0.7
95,113	+				+0.1
95,113	+				+4.1
95,113	+				+0.5
95,113	+				-0.2
95,114	-				+1.5
95,114	-				-0.1
95,114	-				+1.3
95,114	-				-2.3
95,114	-				-0.2
95,114	-				-0.9
95,114	-				+2.8
95,114	-				+0.1
95,198	+				-1.6
95,198	+				+1.3
95,198	+				+0.5
95,198	+				-0.6
95,198	+				-0.7
95,198	+				-1.2
95,198	+				-0.5
95,198	+				+0.8
95,198	+				+0.4
95,198	+				+1.1
95,199	-				+2.0
95,199	-				+1.6
95,199	-				-1.4
95,199	-				-1.9
95,199	-				+1.9
95,199	-				-2.7
95,199	-				-1.2
95,248	+				+2.7
95,248	+				-1.3
95,249	-				-1.6
95,249	-				+0.3
95,249	-				+2.3
95,284	+		GFF4997	0.12	+1.7
95,310	+		GFF4997	0.13	-0.3
95,310	+		GFF4997	0.13	-0.7
95,310	+		GFF4997	0.13	-1.9
95,310	+		GFF4997	0.13	+0.6
95,310	+		GFF4997	0.13	+1.4
95,310	+		GFF4997	0.13	-1.3
95,310	+		GFF4997	0.13	+1.4
95,310	+		GFF4997	0.13	-1.3
95,310	+		GFF4997	0.13	-2.2
95,311	-		GFF4997	0.13	-1.0
95,311	-		GFF4997	0.13	-0.5
95,311	-		GFF4997	0.13	-1.9
95,350	+		GFF4997	0.16	-1.8
95,350	+		GFF4997	0.16	+0.8
95,350	+		GFF4997	0.16	+0.2
95,350	+		GFF4997	0.16	-1.0
95,350	+		GFF4997	0.16	+0.2
95,350	+		GFF4997	0.16	+0.8
95,350	+		GFF4997	0.16	+0.3
95,350	+		GFF4997	0.16	+0.0
95,350	+		GFF4997	0.16	+0.2
95,350	+		GFF4997	0.16	+0.5
95,350	+		GFF4997	0.16	-1.7
95,350	+		GFF4997	0.16	+0.4
95,350	+		GFF4997	0.16	-0.9
95,350	+		GFF4997	0.16	-3.1
95,350	+		GFF4997	0.16	+0.3
95,350	+		GFF4997	0.16	-1.1
95,350	+		GFF4997	0.16	+1.1
95,351	-		GFF4997	0.16	-0.6
95,351	-		GFF4997	0.16	-0.3
95,351	-		GFF4997	0.16	-0.6
95,351	-		GFF4997	0.16	+0.7
95,351	-		GFF4997	0.16	-0.7
95,351	-		GFF4997	0.16	+1.3
95,351	-		GFF4997	0.16	-1.2
95,351	-		GFF4997	0.16	+1.2
95,351	-		GFF4997	0.16	-1.2
95,351	-		GFF4997	0.16	-1.1
95,351	-		GFF4997	0.16	-1.4
95,465	+		GFF4997	0.23	+0.5
95,465	+		GFF4997	0.23	-1.5
95,465	+		GFF4997	0.23	-0.6
95,465	+		GFF4997	0.23	+0.3
95,465	+		GFF4997	0.23	-3.8
95,465	+		GFF4997	0.23	-0.7
95,465	+		GFF4997	0.23	-0.5
95,466	-		GFF4997	0.23	-0.3
95,466	-		GFF4997	0.23	+1.3
95,466	-		GFF4997	0.23	-0.9
95,466	-		GFF4997	0.23	-1.7
95,473	+		GFF4997	0.23	+0.2
95,474	-		GFF4997	0.23	+0.7
95,474	-		GFF4997	0.23	-0.5
95,474	-		GFF4997	0.23	-1.6
95,474	-		GFF4997	0.23	+2.3
95,474	-		GFF4997	0.23	+1.3
95,705	-		GFF4997	0.37	+0.2
95,737	+		GFF4997	0.39	+0.2
95,737	+		GFF4997	0.39	+1.4
95,737	+		GFF4997	0.39	-0.7
95,737	+		GFF4997	0.39	-0.8
95,738	-		GFF4997	0.39	-1.2
95,738	-		GFF4997	0.39	-0.7
95,738	-		GFF4997	0.39	-0.4
95,738	-		GFF4997	0.39	-0.1
95,738	-		GFF4997	0.39	-0.5
95,738	-		GFF4997	0.39	-0.3
95,738	-		GFF4997	0.39	-2.1
95,738	-		GFF4997	0.39	-0.1
95,738	-		GFF4997	0.39	-3.5
95,738	-		GFF4997	0.39	-1.7
95,738	-		GFF4997	0.39	-0.6
95,738	-		GFF4997	0.39	+0.8
95,935	+		GFF4997	0.51	+0.3
95,936	-		GFF4997	0.51	-1.8
95,936	-		GFF4997	0.51	+1.8
95,944	+		GFF4997	0.52	+0.8
95,944	+		GFF4997	0.52	+1.3
95,944	+		GFF4997	0.52	+2.3
95,944	+		GFF4997	0.52	-1.9
95,944	+		GFF4997	0.52	-2.9
95,944	+		GFF4997	0.52	-0.8
95,944	+		GFF4997	0.52	+1.0
95,944	+		GFF4997	0.52	+0.9
95,945	-		GFF4997	0.52	+1.5
95,945	-		GFF4997	0.52	+1.5
95,945	-		GFF4997	0.52	-0.1
95,945	-		GFF4997	0.52	-2.2
96,091	+		GFF4997	0.60	-2.2