Strain Fitness in Variovorax sp. SCN45 around GFF4943

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4941 and GFF4942 are separated by 75 nucleotidesGFF4942 and GFF4943 are separated by 107 nucleotidesGFF4943 and GFF4944 are separated by 49 nucleotides GFF4941 - Gfa-like protein, at 33,942 to 34,361 GFF4941 GFF4942 - Single-stranded DNA-binding protein, at 34,437 to 35,000 GFF4942 GFF4943 - Chloride channel protein, at 35,108 to 36,487 GFF4943 GFF4944 - Excinuclease ABC subunit A, at 36,537 to 39,635 GFF4944 Position (kb) 35 36 37Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 34.122 kb on + strand, within GFF4941at 34.122 kb on + strand, within GFF4941at 34.122 kb on + strand, within GFF4941at 34.122 kb on + strand, within GFF4941at 34.122 kb on + strand, within GFF4941at 34.122 kb on + strand, within GFF4941at 34.123 kb on - strand, within GFF4941at 34.130 kb on + strand, within GFF4941at 34.131 kb on - strand, within GFF4941at 34.131 kb on - strand, within GFF4941at 34.131 kb on - strand, within GFF4941at 34.267 kb on + strand, within GFF4941at 34.268 kb on - strand, within GFF4941at 34.314 kb on + strand, within GFF4941at 35.195 kb on + strandat 35.195 kb on + strandat 35.196 kb on - strandat 35.273 kb on + strand, within GFF4943at 35.273 kb on + strand, within GFF4943at 35.273 kb on + strand, within GFF4943at 35.273 kb on + strand, within GFF4943at 35.274 kb on - strand, within GFF4943at 35.523 kb on + strand, within GFF4943at 35.523 kb on + strand, within GFF4943at 35.524 kb on - strand, within GFF4943at 35.774 kb on + strand, within GFF4943at 35.774 kb on + strand, within GFF4943at 35.774 kb on + strand, within GFF4943at 35.775 kb on - strand, within GFF4943at 35.775 kb on - strand, within GFF4943at 35.775 kb on - strand, within GFF4943at 36.068 kb on + strand, within GFF4943at 36.069 kb on - strand, within GFF4943at 36.069 kb on - strand, within GFF4943at 36.069 kb on - strand, within GFF4943at 36.069 kb on - strand, within GFF4943at 36.069 kb on - strand, within GFF4943at 36.070 kb on + strand, within GFF4943at 36.070 kb on + strand, within GFF4943at 36.070 kb on + strand, within GFF4943at 36.070 kb on + strand, within GFF4943at 36.070 kb on + strand, within GFF4943at 36.070 kb on + strand, within GFF4943at 36.070 kb on + strand, within GFF4943at 36.070 kb on + strand, within GFF4943at 36.071 kb on - strand, within GFF4943at 36.071 kb on - strand, within GFF4943at 36.071 kb on - strand, within GFF4943at 36.071 kb on - strand, within GFF4943at 36.374 kb on + strandat 36.375 kb on - strandat 36.375 kb on - strandat 36.375 kb on - strandat 36.375 kb on - strandat 36.392 kb on + strandat 36.392 kb on + strandat 36.392 kb on + strandat 36.392 kb on + strandat 36.392 kb on + strandat 36.392 kb on + strandat 36.392 kb on + strandat 36.392 kb on + strandat 36.392 kb on + strandat 36.393 kb on - strandat 36.393 kb on - strandat 36.393 kb on - strandat 36.393 kb on - strandat 36.393 kb on - strandat 36.393 kb on - strandat 36.393 kb on - strandat 36.393 kb on - strandat 36.393 kb on - strandat 36.502 kb on + strandat 36.502 kb on + strandat 36.502 kb on + strandat 36.502 kb on + strandat 36.502 kb on + strandat 36.502 kb on + strandat 36.503 kb on - strandat 36.503 kb on - strandat 36.503 kb on - strandat 36.559 kb on + strandat 36.624 kb on + strandat 36.624 kb on + strandat 36.625 kb on - strandat 36.625 kb on - strandat 36.625 kb on - strandat 36.780 kb on + strandat 36.780 kb on + strandat 36.780 kb on + strandat 36.780 kb on + strandat 36.780 kb on + strandat 36.780 kb on + strandat 36.781 kb on - strandat 36.781 kb on - strandat 36.781 kb on - strandat 36.781 kb on - strandat 36.781 kb on - strandat 36.801 kb on + strandat 36.963 kb on + strand, within GFF4944at 36.963 kb on + strand, within GFF4944at 36.964 kb on - strand, within GFF4944at 36.964 kb on - strand, within GFF4944at 36.964 kb on - strand, within GFF4944at 36.979 kb on - strand, within GFF4944at 36.999 kb on + strand, within GFF4944at 37.000 kb on - strand, within GFF4944at 37.000 kb on - strand, within GFF4944at 37.164 kb on + strand, within GFF4944at 37.164 kb on + strand, within GFF4944at 37.165 kb on - strand, within GFF4944at 37.165 kb on - strand, within GFF4944at 37.194 kb on + strand, within GFF4944at 37.194 kb on + strand, within GFF4944at 37.194 kb on + strand, within GFF4944at 37.194 kb on + strand, within GFF4944at 37.194 kb on + strand, within GFF4944at 37.194 kb on + strand, within GFF4944at 37.195 kb on - strand, within GFF4944at 37.195 kb on - strand, within GFF4944at 37.195 kb on - strand, within GFF4944at 37.200 kb on + strand, within GFF4944at 37.200 kb on + strand, within GFF4944at 37.200 kb on + strand, within GFF4944at 37.200 kb on + strand, within GFF4944at 37.200 kb on + strand, within GFF4944at 37.200 kb on + strand, within GFF4944at 37.200 kb on + strand, within GFF4944at 37.200 kb on + strand, within GFF4944at 37.201 kb on - strand, within GFF4944at 37.201 kb on - strand, within GFF4944at 37.201 kb on - strand, within GFF4944at 37.201 kb on - strand, within GFF4944at 37.201 kb on - strand, within GFF4944at 37.423 kb on - strand, within GFF4944at 37.423 kb on - strand, within GFF4944

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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34,122 + GFF4941 0.43 -0.8
34,122 + GFF4941 0.43 -0.5
34,122 + GFF4941 0.43 -1.6
34,122 + GFF4941 0.43 +0.3
34,122 + GFF4941 0.43 -0.9
34,122 + GFF4941 0.43 -3.2
34,123 - GFF4941 0.43 -1.4
34,130 + GFF4941 0.45 -1.0
34,131 - GFF4941 0.45 +1.0
34,131 - GFF4941 0.45 -2.6
34,131 - GFF4941 0.45 +0.8
34,267 + GFF4941 0.77 -1.3
34,268 - GFF4941 0.78 -0.1
34,314 + GFF4941 0.89 -0.9
35,195 + -0.7
35,195 + -0.4
35,196 - -3.6
35,273 + GFF4943 0.12 +0.7
35,273 + GFF4943 0.12 +0.4
35,273 + GFF4943 0.12 -1.5
35,273 + GFF4943 0.12 -1.9
35,274 - GFF4943 0.12 +0.6
35,523 + GFF4943 0.30 -1.2
35,523 + GFF4943 0.30 -0.3
35,524 - GFF4943 0.30 -1.6
35,774 + GFF4943 0.48 -1.8
35,774 + GFF4943 0.48 -0.2
35,774 + GFF4943 0.48 -1.0
35,775 - GFF4943 0.48 +0.5
35,775 - GFF4943 0.48 -1.2
35,775 - GFF4943 0.48 +0.4
36,068 + GFF4943 0.70 -1.3
36,069 - GFF4943 0.70 +0.7
36,069 - GFF4943 0.70 -1.3
36,069 - GFF4943 0.70 -1.3
36,069 - GFF4943 0.70 -0.1
36,069 - GFF4943 0.70 +2.1
36,070 + GFF4943 0.70 -2.2
36,070 + GFF4943 0.70 -2.9
36,070 + GFF4943 0.70 +0.4
36,070 + GFF4943 0.70 +0.6
36,070 + GFF4943 0.70 -0.1
36,070 + GFF4943 0.70 -0.9
36,070 + GFF4943 0.70 -0.7
36,070 + GFF4943 0.70 -3.7
36,071 - GFF4943 0.70 -1.8
36,071 - GFF4943 0.70 -2.5
36,071 - GFF4943 0.70 -1.3
36,071 - GFF4943 0.70 -0.0
36,374 + -0.2
36,375 - +0.6
36,375 - -0.6
36,375 - +0.3
36,375 - +0.4
36,392 + -0.6
36,392 + +0.1
36,392 + +2.3
36,392 + -1.0
36,392 + -0.0
36,392 + +0.3
36,392 + +1.2
36,392 + -2.0
36,392 + -1.0
36,393 - -1.0
36,393 - -0.4
36,393 - -1.5
36,393 - -2.5
36,393 - -2.7
36,393 - +0.8
36,393 - -3.1
36,393 - +0.7
36,393 - -3.3
36,502 + -0.5
36,502 + -0.2
36,502 + -2.3
36,502 + +1.9
36,502 + +1.1
36,502 + -0.9
36,503 - +0.5
36,503 - -2.2
36,503 - -0.2
36,559 + +2.1
36,624 + -0.3
36,624 + -0.2
36,625 - -1.2
36,625 - +0.5
36,625 - -1.0
36,780 + -1.4
36,780 + +1.3
36,780 + -0.5
36,780 + +2.9
36,780 + +0.8
36,780 + -0.5
36,781 - -0.1
36,781 - -2.7
36,781 - +0.7
36,781 - -0.4
36,781 - -0.7
36,801 + -2.2
36,963 + GFF4944 0.14 +1.0
36,963 + GFF4944 0.14 -1.3
36,964 - GFF4944 0.14 +0.3
36,964 - GFF4944 0.14 -0.9
36,964 - GFF4944 0.14 -3.4
36,979 - GFF4944 0.14 -0.4
36,999 + GFF4944 0.15 -0.4
37,000 - GFF4944 0.15 -0.9
37,000 - GFF4944 0.15 -1.4
37,164 + GFF4944 0.20 -2.3
37,164 + GFF4944 0.20 -0.3
37,165 - GFF4944 0.20 -0.2
37,165 - GFF4944 0.20 -0.1
37,194 + GFF4944 0.21 -1.4
37,194 + GFF4944 0.21 -2.0
37,194 + GFF4944 0.21 -0.7
37,194 + GFF4944 0.21 -0.5
37,194 + GFF4944 0.21 -0.5
37,194 + GFF4944 0.21 -1.0
37,195 - GFF4944 0.21 -1.3
37,195 - GFF4944 0.21 -0.9
37,195 - GFF4944 0.21 +0.2
37,200 + GFF4944 0.21 -1.1
37,200 + GFF4944 0.21 -0.0
37,200 + GFF4944 0.21 -0.1
37,200 + GFF4944 0.21 -2.2
37,200 + GFF4944 0.21 -1.4
37,200 + GFF4944 0.21 -3.6
37,200 + GFF4944 0.21 -3.7
37,200 + GFF4944 0.21 +1.3
37,201 - GFF4944 0.21 +0.3
37,201 - GFF4944 0.21 +2.0
37,201 - GFF4944 0.21 -0.5
37,201 - GFF4944 0.21 +1.3
37,201 - GFF4944 0.21 +0.3
37,423 - GFF4944 0.29 +1.0
37,423 - GFF4944 0.29 -2.6

Or see this region's nucleotide sequence