Strain Fitness in Variovorax sp. SCN45 around GFF4941

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
33,046	-				+0.4
33,046	-				-0.8
33,122	-				+2.1
33,122	-				+2.0
33,126	+				-2.6
33,126	+				+1.8
33,126	+				-1.8
33,126	+				-0.4
33,126	+				-1.2
33,126	+				-0.2
33,126	+				+0.4
33,127	-				+1.3
33,127	-				+1.8
33,127	-				-0.3
33,452	+		GFF4940	0.34	+0.8
33,452	+		GFF4940	0.34	-0.7
33,452	+		GFF4940	0.34	+0.3
33,452	+		GFF4940	0.34	-0.6
33,452	+		GFF4940	0.34	+1.4
33,453	-		GFF4940	0.35	+0.8
33,453	-		GFF4940	0.35	+1.6
33,453	-		GFF4940	0.35	+1.3
33,453	-		GFF4940	0.35	-1.8
33,453	-		GFF4940	0.35	+3.3
33,791	+		GFF4940	0.82	-2.9
33,791	+		GFF4940	0.82	+0.6
33,791	+		GFF4940	0.82	+1.4
33,792	-		GFF4940	0.82	+0.5
33,792	-		GFF4940	0.82	-0.2
33,978	+				+0.8
33,978	+				+1.3
33,978	+				+0.4
33,979	-				-0.5
34,122	+		GFF4941	0.43	-0.8
34,122	+		GFF4941	0.43	-0.5
34,122	+		GFF4941	0.43	-1.6
34,122	+		GFF4941	0.43	+0.3
34,122	+		GFF4941	0.43	-0.9
34,122	+		GFF4941	0.43	-3.2
34,123	-		GFF4941	0.43	-1.4
34,130	+		GFF4941	0.45	-1.0
34,131	-		GFF4941	0.45	+1.0
34,131	-		GFF4941	0.45	-2.6
34,131	-		GFF4941	0.45	+0.8
34,267	+		GFF4941	0.77	-1.3
34,268	-		GFF4941	0.78	-0.1
34,314	+		GFF4941	0.89	-0.9
35,195	+				-0.7
35,195	+				-0.4
35,196	-				-3.6
35,273	+		GFF4943	0.12	+0.7
35,273	+		GFF4943	0.12	+0.4
35,273	+		GFF4943	0.12	-1.5
35,273	+		GFF4943	0.12	-1.9
35,274	-		GFF4943	0.12	+0.6