Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4881 and GFF4882 are separated by 62 nucleotides GFF4882 and GFF4884 are separated by 65 nucleotides GFF4884 and GFF4883 overlap by 27 nucleotides
GFF4881 - HYPOTHETICAL/UNKNOWN PROTEIN, at 249,570 to 249,779
GFF4881
GFF4882 - putative plasmid stabilization protein, at 249,842 to 251,881
GFF4882
GFF4884 - UPF0380 proteins YafZ and homologs, at 251,947 to 252,771
GFF4884
GFF4883 - Translation-disabling ACNase RloC, at 252,745 to 253,371
GFF4883
Position (kb) 249
250
251
252 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 248.893 kb on + strand at 248.894 kb on - strand at 248.894 kb on - strand at 248.894 kb on - strand at 248.894 kb on - strand at 248.914 kb on + strand at 248.914 kb on + strand at 248.914 kb on + strand at 248.914 kb on + strand at 248.914 kb on + strand at 248.914 kb on + strand at 248.914 kb on + strand at 248.915 kb on - strand at 248.915 kb on - strand at 248.915 kb on - strand at 248.915 kb on - strand at 248.915 kb on - strand at 249.039 kb on - strand at 249.119 kb on + strand at 249.119 kb on + strand at 249.119 kb on + strand at 249.119 kb on + strand at 249.119 kb on + strand at 249.119 kb on + strand at 249.119 kb on + strand at 249.119 kb on + strand at 249.119 kb on + strand at 249.119 kb on + strand at 249.119 kb on + strand at 249.120 kb on - strand at 249.120 kb on - strand at 249.120 kb on - strand at 249.120 kb on - strand at 249.120 kb on - strand at 249.120 kb on - strand at 249.120 kb on - strand at 249.120 kb on - strand at 249.120 kb on - strand at 249.120 kb on - strand at 249.120 kb on - strand at 249.120 kb on - strand at 249.202 kb on + strand at 249.202 kb on + strand at 249.202 kb on + strand at 249.202 kb on + strand at 249.202 kb on + strand at 249.202 kb on + strand at 249.202 kb on + strand at 249.202 kb on + strand at 249.203 kb on - strand at 249.203 kb on - strand at 249.203 kb on - strand at 249.203 kb on - strand at 249.203 kb on - strand at 249.203 kb on - strand at 249.203 kb on - strand at 249.203 kb on - strand at 249.216 kb on - strand at 249.216 kb on - strand at 249.216 kb on - strand at 249.216 kb on - strand at 249.216 kb on - strand at 249.216 kb on - strand at 249.339 kb on - strand at 249.355 kb on + strand at 249.355 kb on + strand at 249.355 kb on + strand at 249.355 kb on + strand at 249.355 kb on + strand at 249.356 kb on - strand at 249.356 kb on - strand at 249.356 kb on - strand at 249.356 kb on - strand at 249.356 kb on - strand at 249.356 kb on - strand at 249.381 kb on + strand at 249.381 kb on + strand at 249.381 kb on + strand at 249.381 kb on + strand at 249.401 kb on + strand at 249.401 kb on + strand at 249.401 kb on + strand at 249.401 kb on + strand at 249.401 kb on + strand at 249.401 kb on + strand at 249.401 kb on + strand at 249.402 kb on - strand at 249.402 kb on - strand at 249.402 kb on - strand at 249.402 kb on - strand at 249.402 kb on - strand at 249.402 kb on - strand at 249.402 kb on - strand at 249.402 kb on - strand at 249.402 kb on - strand at 249.402 kb on - strand at 249.402 kb on - strand at 249.471 kb on + strand at 249.471 kb on + strand at 249.471 kb on + strand at 249.471 kb on + strand at 249.472 kb on - strand at 249.472 kb on - strand at 249.571 kb on + strand at 249.571 kb on + strand at 249.571 kb on + strand at 249.571 kb on + strand at 249.572 kb on - strand at 249.572 kb on - strand at 249.635 kb on + strand, within GFF4881 at 249.636 kb on - strand, within GFF4881 at 249.736 kb on + strand, within GFF4881 at 249.736 kb on + strand, within GFF4881 at 249.736 kb on + strand, within GFF4881 at 249.736 kb on + strand, within GFF4881 at 249.736 kb on + strand, within GFF4881 at 249.736 kb on + strand, within GFF4881 at 249.736 kb on + strand, within GFF4881 at 249.736 kb on + strand, within GFF4881 at 249.737 kb on - strand, within GFF4881 at 249.737 kb on - strand, within GFF4881 at 249.737 kb on - strand, within GFF4881 at 249.737 kb on - strand, within GFF4881 at 249.737 kb on - strand, within GFF4881 at 249.737 kb on - strand, within GFF4881 at 249.737 kb on - strand, within GFF4881 at 249.737 kb on - strand, within GFF4881 at 249.737 kb on - strand, within GFF4881 at 249.737 kb on - strand, within GFF4881 at 250.086 kb on + strand, within GFF4882 at 250.086 kb on + strand, within GFF4882 at 250.087 kb on - strand, within GFF4882 at 250.087 kb on - strand, within GFF4882 at 250.087 kb on - strand, within GFF4882 at 250.087 kb on - strand, within GFF4882 at 250.087 kb on - strand, within GFF4882 at 250.283 kb on + strand, within GFF4882 at 250.284 kb on - strand, within GFF4882 at 250.284 kb on - strand, within GFF4882 at 250.284 kb on - strand, within GFF4882 at 250.400 kb on + strand, within GFF4882 at 250.400 kb on + strand, within GFF4882 at 250.400 kb on + strand, within GFF4882 at 250.400 kb on + strand, within GFF4882 at 250.400 kb on + strand, within GFF4882 at 250.400 kb on + strand, within GFF4882 at 250.413 kb on + strand, within GFF4882 at 250.413 kb on + strand, within GFF4882 at 250.413 kb on + strand, within GFF4882 at 250.414 kb on - strand, within GFF4882 at 250.414 kb on - strand, within GFF4882 at 250.414 kb on - strand, within GFF4882 at 250.414 kb on - strand, within GFF4882 at 250.414 kb on - strand, within GFF4882 at 250.416 kb on + strand, within GFF4882 at 250.416 kb on + strand, within GFF4882 at 250.416 kb on + strand, within GFF4882 at 250.416 kb on + strand, within GFF4882 at 250.416 kb on + strand, within GFF4882 at 250.416 kb on + strand, within GFF4882 at 250.417 kb on - strand, within GFF4882 at 250.417 kb on - strand, within GFF4882 at 250.417 kb on - strand, within GFF4882 at 250.417 kb on - strand, within GFF4882 at 250.417 kb on - strand, within GFF4882 at 250.620 kb on - strand, within GFF4882 at 250.620 kb on - strand, within GFF4882 at 250.749 kb on + strand, within GFF4882 at 250.749 kb on + strand, within GFF4882 at 250.749 kb on + strand, within GFF4882 at 250.750 kb on - strand, within GFF4882 at 250.750 kb on - strand, within GFF4882 at 251.085 kb on + strand, within GFF4882 at 251.085 kb on + strand, within GFF4882 at 251.085 kb on + strand, within GFF4882 at 251.086 kb on - strand, within GFF4882 at 251.086 kb on - strand, within GFF4882 at 251.086 kb on - strand, within GFF4882 at 251.144 kb on + strand, within GFF4882 at 251.145 kb on + strand, within GFF4882 at 251.145 kb on + strand, within GFF4882 at 251.145 kb on + strand, within GFF4882 at 251.145 kb on + strand, within GFF4882 at 251.145 kb on + strand, within GFF4882 at 251.145 kb on + strand, within GFF4882 at 251.145 kb on + strand, within GFF4882 at 251.184 kb on + strand, within GFF4882 at 251.184 kb on + strand, within GFF4882 at 251.184 kb on + strand, within GFF4882 at 251.184 kb on + strand, within GFF4882 at 251.184 kb on + strand, within GFF4882 at 251.184 kb on + strand, within GFF4882 at 251.184 kb on + strand, within GFF4882 at 251.184 kb on + strand, within GFF4882 at 251.185 kb on - strand, within GFF4882 at 251.185 kb on - strand, within GFF4882 at 251.185 kb on - strand, within GFF4882 at 251.185 kb on - strand, within GFF4882 at 251.185 kb on - strand, within GFF4882 at 251.185 kb on - strand, within GFF4882 at 251.256 kb on + strand, within GFF4882 at 251.257 kb on - strand, within GFF4882 at 251.257 kb on - strand, within GFF4882 at 251.257 kb on - strand, within GFF4882 at 251.337 kb on + strand, within GFF4882 at 251.338 kb on - strand, within GFF4882 at 251.640 kb on + strand, within GFF4882 at 251.640 kb on + strand, within GFF4882 at 251.640 kb on + strand, within GFF4882 at 251.640 kb on + strand, within GFF4882 at 251.640 kb on + strand, within GFF4882 at 251.640 kb on + strand, within GFF4882 at 251.640 kb on + strand, within GFF4882 at 251.641 kb on - strand, within GFF4882 at 251.641 kb on - strand, within GFF4882 at 251.641 kb on - strand, within GFF4882 at 251.641 kb on - strand, within GFF4882 at 251.641 kb on - strand, within GFF4882 at 251.641 kb on - strand, within GFF4882 at 251.641 kb on - strand, within GFF4882 at 251.865 kb on + strand at 251.865 kb on + strand at 251.865 kb on + strand at 251.865 kb on + strand at 251.865 kb on + strand at 251.865 kb on + strand at 251.865 kb on + strand at 251.865 kb on + strand at 251.865 kb on + strand at 251.865 kb on + strand at 251.865 kb on + strand at 251.865 kb on + strand at 251.865 kb on + strand at 251.865 kb on + strand at 251.865 kb on + strand at 251.866 kb on - strand at 251.866 kb on - strand at 251.866 kb on - strand at 251.866 kb on - strand at 251.866 kb on - strand at 251.866 kb on - strand at 251.866 kb on - strand at 251.866 kb on - strand at 251.866 kb on - strand at 251.866 kb on - strand at 251.866 kb on - strand at 251.866 kb on - strand at 251.866 kb on - strand at 251.866 kb on - strand at 251.866 kb on - strand at 251.869 kb on + strand at 251.869 kb on + strand at 251.870 kb on - strand at 252.200 kb on + strand, within GFF4884 at 252.200 kb on + strand, within GFF4884 at 252.201 kb on - strand, within GFF4884 at 252.201 kb on - strand, within GFF4884 at 252.307 kb on + strand, within GFF4884 at 252.307 kb on + strand, within GFF4884 at 252.307 kb on + strand, within GFF4884 at 252.307 kb on + strand, within GFF4884 at 252.307 kb on + strand, within GFF4884 at 252.307 kb on + strand, within GFF4884 at 252.308 kb on - strand, within GFF4884 at 252.308 kb on - strand, within GFF4884 at 252.308 kb on - strand, within GFF4884 at 252.308 kb on - strand, within GFF4884 at 252.314 kb on + strand, within GFF4884 at 252.314 kb on + strand, within GFF4884 at 252.314 kb on + strand, within GFF4884 at 252.315 kb on - strand, within GFF4884 at 252.315 kb on - strand, within GFF4884 at 252.438 kb on - strand, within GFF4884 at 252.438 kb on - strand, within GFF4884 at 252.480 kb on + strand, within GFF4884 at 252.635 kb on + strand, within GFF4884 at 252.635 kb on + strand, within GFF4884 at 252.635 kb on + strand, within GFF4884 at 252.635 kb on + strand, within GFF4884 at 252.635 kb on + strand, within GFF4884 at 252.635 kb on + strand, within GFF4884 at 252.635 kb on + strand, within GFF4884 at 252.635 kb on + strand, within GFF4884 at 252.635 kb on + strand, within GFF4884 at 252.635 kb on + strand, within GFF4884 at 252.635 kb on + strand, within GFF4884 at 252.635 kb on + strand, within GFF4884 at 252.635 kb on + strand, within GFF4884 at 252.635 kb on + strand, within GFF4884 at 252.635 kb on + strand, within GFF4884 at 252.636 kb on - strand, within GFF4884 at 252.636 kb on - strand, within GFF4884 at 252.636 kb on - strand, within GFF4884 at 252.636 kb on - strand, within GFF4884 at 252.636 kb on - strand, within GFF4884 at 252.636 kb on - strand, within GFF4884 at 252.636 kb on - strand, within GFF4884 at 252.636 kb on - strand, within GFF4884 at 252.636 kb on - strand, within GFF4884 at 252.636 kb on - strand, within GFF4884 at 252.636 kb on - strand, within GFF4884
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 248,893 + +0.9 248,894 - -2.5 248,894 - -0.6 248,894 - -2.0 248,894 - +0.0 248,914 + -2.2 248,914 + -2.0 248,914 + -2.4 248,914 + -1.9 248,914 + -1.9 248,914 + +2.0 248,914 + +0.6 248,915 - +3.1 248,915 - -2.1 248,915 - -0.5 248,915 - +0.4 248,915 - -0.4 249,039 - -1.3 249,119 + -1.1 249,119 + -0.6 249,119 + -0.3 249,119 + +0.5 249,119 + +0.0 249,119 + -0.6 249,119 + -0.1 249,119 + -3.4 249,119 + -2.2 249,119 + -0.9 249,119 + -2.0 249,120 - +1.2 249,120 - +0.5 249,120 - -2.8 249,120 - +0.5 249,120 - +1.0 249,120 - +1.0 249,120 - -1.1 249,120 - -1.6 249,120 - -1.8 249,120 - +1.2 249,120 - -0.9 249,120 - -0.4 249,202 + +1.6 249,202 + -0.4 249,202 + -3.7 249,202 + -1.2 249,202 + -1.5 249,202 + +0.5 249,202 + -1.1 249,202 + -0.6 249,203 - -3.7 249,203 - -0.6 249,203 - -0.5 249,203 - +2.9 249,203 - +0.3 249,203 - +0.1 249,203 - +1.1 249,203 - -0.0 249,216 - +0.7 249,216 - +0.3 249,216 - +0.7 249,216 - -2.2 249,216 - -3.4 249,216 - -0.2 249,339 - -0.5 249,355 + -1.1 249,355 + -1.5 249,355 + +0.1 249,355 + -2.0 249,355 + -1.9 249,356 - -2.2 249,356 - +1.0 249,356 - +0.6 249,356 - -1.8 249,356 - -1.9 249,356 - +2.1 249,381 + -1.9 249,381 + -3.5 249,381 + -0.1 249,381 + -2.3 249,401 + -0.2 249,401 + -1.5 249,401 + -3.6 249,401 + -1.2 249,401 + -2.5 249,401 + -1.3 249,401 + -0.9 249,402 - -2.4 249,402 - -1.5 249,402 - -0.1 249,402 - +0.1 249,402 - -1.1 249,402 - -0.9 249,402 - +0.2 249,402 - +0.7 249,402 - +0.4 249,402 - -1.3 249,402 - -1.6 249,471 + +0.7 249,471 + -0.2 249,471 + -2.0 249,471 + +0.2 249,472 - -2.0 249,472 - -0.9 249,571 + -0.6 249,571 + +0.1 249,571 + +0.7 249,571 + -0.1 249,572 - -2.8 249,572 - -2.1 249,635 + GFF4881 0.31 +2.5 249,636 - GFF4881 0.31 +0.7 249,736 + GFF4881 0.79 -2.1 249,736 + GFF4881 0.79 +0.0 249,736 + GFF4881 0.79 -0.0 249,736 + GFF4881 0.79 -2.9 249,736 + GFF4881 0.79 -1.3 249,736 + GFF4881 0.79 -0.1 249,736 + GFF4881 0.79 -2.3 249,736 + GFF4881 0.79 +0.8 249,737 - GFF4881 0.80 +1.4 249,737 - GFF4881 0.80 -2.3 249,737 - GFF4881 0.80 +1.7 249,737 - GFF4881 0.80 -0.0 249,737 - GFF4881 0.80 +0.0 249,737 - GFF4881 0.80 -0.1 249,737 - GFF4881 0.80 +0.8 249,737 - GFF4881 0.80 -1.1 249,737 - GFF4881 0.80 -0.6 249,737 - GFF4881 0.80 +1.5 250,086 + GFF4882 0.12 +2.7 250,086 + GFF4882 0.12 +0.6 250,087 - GFF4882 0.12 -0.4 250,087 - GFF4882 0.12 -2.2 250,087 - GFF4882 0.12 -1.3 250,087 - GFF4882 0.12 +0.8 250,087 - GFF4882 0.12 -0.9 250,283 + GFF4882 0.22 -2.1 250,284 - GFF4882 0.22 +3.2 250,284 - GFF4882 0.22 -0.1 250,284 - GFF4882 0.22 +0.1 250,400 + GFF4882 0.27 +0.8 250,400 + GFF4882 0.27 -0.5 250,400 + GFF4882 0.27 +0.0 250,400 + GFF4882 0.27 -0.3 250,400 + GFF4882 0.27 -0.7 250,400 + GFF4882 0.27 +4.3 250,413 + GFF4882 0.28 -0.3 250,413 + GFF4882 0.28 +1.7 250,413 + GFF4882 0.28 -1.7 250,414 - GFF4882 0.28 -1.1 250,414 - GFF4882 0.28 +0.1 250,414 - GFF4882 0.28 -1.1 250,414 - GFF4882 0.28 +3.0 250,414 - GFF4882 0.28 +0.7 250,416 + GFF4882 0.28 -0.3 250,416 + GFF4882 0.28 +1.7 250,416 + GFF4882 0.28 -2.7 250,416 + GFF4882 0.28 +0.7 250,416 + GFF4882 0.28 -1.3 250,416 + GFF4882 0.28 +0.2 250,417 - GFF4882 0.28 -1.5 250,417 - GFF4882 0.28 -3.1 250,417 - GFF4882 0.28 +1.0 250,417 - GFF4882 0.28 +0.3 250,417 - GFF4882 0.28 +0.5 250,620 - GFF4882 0.38 +0.5 250,620 - GFF4882 0.38 +0.4 250,749 + GFF4882 0.44 +2.0 250,749 + GFF4882 0.44 -0.8 250,749 + GFF4882 0.44 +1.0 250,750 - GFF4882 0.45 +1.0 250,750 - GFF4882 0.45 -1.3 251,085 + GFF4882 0.61 -0.6 251,085 + GFF4882 0.61 +0.9 251,085 + GFF4882 0.61 -1.9 251,086 - GFF4882 0.61 +0.5 251,086 - GFF4882 0.61 -1.9 251,086 - GFF4882 0.61 +0.5 251,144 + GFF4882 0.64 -1.1 251,145 + GFF4882 0.64 +0.9 251,145 + GFF4882 0.64 -2.2 251,145 + GFF4882 0.64 +0.2 251,145 + GFF4882 0.64 +1.5 251,145 + GFF4882 0.64 +0.7 251,145 + GFF4882 0.64 -0.7 251,145 + GFF4882 0.64 +0.1 251,184 + GFF4882 0.66 +0.4 251,184 + GFF4882 0.66 -2.0 251,184 + GFF4882 0.66 -0.3 251,184 + GFF4882 0.66 -1.6 251,184 + GFF4882 0.66 -1.1 251,184 + GFF4882 0.66 +0.7 251,184 + GFF4882 0.66 +1.0 251,184 + GFF4882 0.66 +0.4 251,185 - GFF4882 0.66 +0.1 251,185 - GFF4882 0.66 -1.9 251,185 - GFF4882 0.66 -1.6 251,185 - GFF4882 0.66 +1.9 251,185 - GFF4882 0.66 +1.1 251,185 - GFF4882 0.66 +0.3 251,256 + GFF4882 0.69 +0.5 251,257 - GFF4882 0.69 -0.4 251,257 - GFF4882 0.69 +1.3 251,257 - GFF4882 0.69 -0.3 251,337 + GFF4882 0.73 -1.1 251,338 - GFF4882 0.73 -0.6 251,640 + GFF4882 0.88 +0.5 251,640 + GFF4882 0.88 +1.8 251,640 + GFF4882 0.88 +1.1 251,640 + GFF4882 0.88 -0.1 251,640 + GFF4882 0.88 -2.1 251,640 + GFF4882 0.88 +0.3 251,640 + GFF4882 0.88 -0.3 251,641 - GFF4882 0.88 -1.7 251,641 - GFF4882 0.88 -0.6 251,641 - GFF4882 0.88 -0.9 251,641 - GFF4882 0.88 -1.5 251,641 - GFF4882 0.88 -2.3 251,641 - GFF4882 0.88 -0.1 251,641 - GFF4882 0.88 +0.1 251,865 + -3.2 251,865 + -0.6 251,865 + +0.7 251,865 + -1.3 251,865 + +0.1 251,865 + -0.6 251,865 + -2.4 251,865 + +1.7 251,865 + +0.2 251,865 + -1.5 251,865 + -2.0 251,865 + -0.1 251,865 + -2.9 251,865 + +0.7 251,865 + -0.7 251,866 - +0.8 251,866 - -0.1 251,866 - +0.5 251,866 - -1.1 251,866 - +0.9 251,866 - -1.6 251,866 - +1.9 251,866 - -0.3 251,866 - -2.9 251,866 - +0.5 251,866 - +0.4 251,866 - -1.0 251,866 - +0.6 251,866 - -0.9 251,866 - +0.8 251,869 + +0.7 251,869 + -1.9 251,870 - -0.6 252,200 + GFF4884 0.31 -1.9 252,200 + GFF4884 0.31 +0.8 252,201 - GFF4884 0.31 -0.3 252,201 - GFF4884 0.31 -0.9 252,307 + GFF4884 0.44 +0.2 252,307 + GFF4884 0.44 -0.5 252,307 + GFF4884 0.44 -1.1 252,307 + GFF4884 0.44 +0.1 252,307 + GFF4884 0.44 -2.7 252,307 + GFF4884 0.44 -2.5 252,308 - GFF4884 0.44 -2.5 252,308 - GFF4884 0.44 +0.6 252,308 - GFF4884 0.44 -1.3 252,308 - GFF4884 0.44 -1.4 252,314 + GFF4884 0.44 -0.2 252,314 + GFF4884 0.44 +1.2 252,314 + GFF4884 0.44 -3.3 252,315 - GFF4884 0.45 -0.5 252,315 - GFF4884 0.45 +1.1 252,438 - GFF4884 0.60 -0.4 252,438 - GFF4884 0.60 +1.0 252,480 + GFF4884 0.65 +0.7 252,635 + GFF4884 0.83 -0.8 252,635 + GFF4884 0.83 +1.0 252,635 + GFF4884 0.83 +1.5 252,635 + GFF4884 0.83 +0.1 252,635 + GFF4884 0.83 -0.6 252,635 + GFF4884 0.83 -0.1 252,635 + GFF4884 0.83 +1.2 252,635 + GFF4884 0.83 -0.2 252,635 + GFF4884 0.83 +0.2 252,635 + GFF4884 0.83 -1.3 252,635 + GFF4884 0.83 +1.1 252,635 + GFF4884 0.83 -0.4 252,635 + GFF4884 0.83 +0.0 252,635 + GFF4884 0.83 -0.2 252,635 + GFF4884 0.83 +0.8 252,636 - GFF4884 0.84 -1.6 252,636 - GFF4884 0.84 -1.5 252,636 - GFF4884 0.84 -0.2 252,636 - GFF4884 0.84 -1.1 252,636 - GFF4884 0.84 -1.7 252,636 - GFF4884 0.84 +1.2 252,636 - GFF4884 0.84 +1.2 252,636 - GFF4884 0.84 -0.4 252,636 - GFF4884 0.84 +0.6 252,636 - GFF4884 0.84 -2.5 252,636 - GFF4884 0.84 +0.7
Or see this region's nucleotide sequence