Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4881 and GFF4882 are separated by 62 nucleotides
GFF4881 - HYPOTHETICAL/UNKNOWN PROTEIN, at 249,570 to 249,779
GFF4881
GFF4882 - putative plasmid stabilization protein, at 249,842 to 251,881
GFF4882
Position (kb) 249
250 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 248.695 kb on + strand at 248.695 kb on + strand at 248.893 kb on + strand at 248.894 kb on - strand at 248.894 kb on - strand at 248.894 kb on - strand at 248.894 kb on - strand at 248.914 kb on + strand at 248.914 kb on + strand at 248.914 kb on + strand at 248.914 kb on + strand at 248.914 kb on + strand at 248.914 kb on + strand at 248.914 kb on + strand at 248.915 kb on - strand at 248.915 kb on - strand at 248.915 kb on - strand at 248.915 kb on - strand at 248.915 kb on - strand at 249.039 kb on - strand at 249.119 kb on + strand at 249.119 kb on + strand at 249.119 kb on + strand at 249.119 kb on + strand at 249.119 kb on + strand at 249.119 kb on + strand at 249.119 kb on + strand at 249.119 kb on + strand at 249.119 kb on + strand at 249.119 kb on + strand at 249.119 kb on + strand at 249.120 kb on - strand at 249.120 kb on - strand at 249.120 kb on - strand at 249.120 kb on - strand at 249.120 kb on - strand at 249.120 kb on - strand at 249.120 kb on - strand at 249.120 kb on - strand at 249.120 kb on - strand at 249.120 kb on - strand at 249.120 kb on - strand at 249.120 kb on - strand at 249.202 kb on + strand at 249.202 kb on + strand at 249.202 kb on + strand at 249.202 kb on + strand at 249.202 kb on + strand at 249.202 kb on + strand at 249.202 kb on + strand at 249.202 kb on + strand at 249.203 kb on - strand at 249.203 kb on - strand at 249.203 kb on - strand at 249.203 kb on - strand at 249.203 kb on - strand at 249.203 kb on - strand at 249.203 kb on - strand at 249.203 kb on - strand at 249.216 kb on - strand at 249.216 kb on - strand at 249.216 kb on - strand at 249.216 kb on - strand at 249.216 kb on - strand at 249.216 kb on - strand at 249.339 kb on - strand at 249.355 kb on + strand at 249.355 kb on + strand at 249.355 kb on + strand at 249.355 kb on + strand at 249.355 kb on + strand at 249.356 kb on - strand at 249.356 kb on - strand at 249.356 kb on - strand at 249.356 kb on - strand at 249.356 kb on - strand at 249.356 kb on - strand at 249.381 kb on + strand at 249.381 kb on + strand at 249.381 kb on + strand at 249.381 kb on + strand at 249.401 kb on + strand at 249.401 kb on + strand at 249.401 kb on + strand at 249.401 kb on + strand at 249.401 kb on + strand at 249.401 kb on + strand at 249.401 kb on + strand at 249.402 kb on - strand at 249.402 kb on - strand at 249.402 kb on - strand at 249.402 kb on - strand at 249.402 kb on - strand at 249.402 kb on - strand at 249.402 kb on - strand at 249.402 kb on - strand at 249.402 kb on - strand at 249.402 kb on - strand at 249.402 kb on - strand at 249.471 kb on + strand at 249.471 kb on + strand at 249.471 kb on + strand at 249.471 kb on + strand at 249.472 kb on - strand at 249.472 kb on - strand at 249.571 kb on + strand at 249.571 kb on + strand at 249.571 kb on + strand at 249.571 kb on + strand at 249.572 kb on - strand at 249.572 kb on - strand at 249.635 kb on + strand, within GFF4881 at 249.636 kb on - strand, within GFF4881 at 249.736 kb on + strand, within GFF4881 at 249.736 kb on + strand, within GFF4881 at 249.736 kb on + strand, within GFF4881 at 249.736 kb on + strand, within GFF4881 at 249.736 kb on + strand, within GFF4881 at 249.736 kb on + strand, within GFF4881 at 249.736 kb on + strand, within GFF4881 at 249.736 kb on + strand, within GFF4881 at 249.737 kb on - strand, within GFF4881 at 249.737 kb on - strand, within GFF4881 at 249.737 kb on - strand, within GFF4881 at 249.737 kb on - strand, within GFF4881 at 249.737 kb on - strand, within GFF4881 at 249.737 kb on - strand, within GFF4881 at 249.737 kb on - strand, within GFF4881 at 249.737 kb on - strand, within GFF4881 at 249.737 kb on - strand, within GFF4881 at 249.737 kb on - strand, within GFF4881 at 250.086 kb on + strand, within GFF4882 at 250.086 kb on + strand, within GFF4882 at 250.087 kb on - strand, within GFF4882 at 250.087 kb on - strand, within GFF4882 at 250.087 kb on - strand, within GFF4882 at 250.087 kb on - strand, within GFF4882 at 250.087 kb on - strand, within GFF4882 at 250.283 kb on + strand, within GFF4882 at 250.284 kb on - strand, within GFF4882 at 250.284 kb on - strand, within GFF4882 at 250.284 kb on - strand, within GFF4882 at 250.400 kb on + strand, within GFF4882 at 250.400 kb on + strand, within GFF4882 at 250.400 kb on + strand, within GFF4882 at 250.400 kb on + strand, within GFF4882 at 250.400 kb on + strand, within GFF4882 at 250.400 kb on + strand, within GFF4882 at 250.413 kb on + strand, within GFF4882 at 250.413 kb on + strand, within GFF4882 at 250.413 kb on + strand, within GFF4882 at 250.414 kb on - strand, within GFF4882 at 250.414 kb on - strand, within GFF4882 at 250.414 kb on - strand, within GFF4882 at 250.414 kb on - strand, within GFF4882 at 250.414 kb on - strand, within GFF4882 at 250.416 kb on + strand, within GFF4882 at 250.416 kb on + strand, within GFF4882 at 250.416 kb on + strand, within GFF4882 at 250.416 kb on + strand, within GFF4882 at 250.416 kb on + strand, within GFF4882 at 250.416 kb on + strand, within GFF4882 at 250.417 kb on - strand, within GFF4882 at 250.417 kb on - strand, within GFF4882 at 250.417 kb on - strand, within GFF4882 at 250.417 kb on - strand, within GFF4882 at 250.417 kb on - strand, within GFF4882 at 250.620 kb on - strand, within GFF4882 at 250.620 kb on - strand, within GFF4882 at 250.749 kb on + strand, within GFF4882 at 250.749 kb on + strand, within GFF4882 at 250.749 kb on + strand, within GFF4882 at 250.750 kb on - strand, within GFF4882 at 250.750 kb on - strand, within GFF4882
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 248,695 + +1.3 248,695 + -1.1 248,893 + +0.9 248,894 - -2.5 248,894 - -0.6 248,894 - -2.0 248,894 - +0.0 248,914 + -2.2 248,914 + -2.0 248,914 + -2.4 248,914 + -1.9 248,914 + -1.9 248,914 + +2.0 248,914 + +0.6 248,915 - +3.1 248,915 - -2.1 248,915 - -0.5 248,915 - +0.4 248,915 - -0.4 249,039 - -1.3 249,119 + -1.1 249,119 + -0.6 249,119 + -0.3 249,119 + +0.5 249,119 + +0.0 249,119 + -0.6 249,119 + -0.1 249,119 + -3.4 249,119 + -2.2 249,119 + -0.9 249,119 + -2.0 249,120 - +1.2 249,120 - +0.5 249,120 - -2.8 249,120 - +0.5 249,120 - +1.0 249,120 - +1.0 249,120 - -1.1 249,120 - -1.6 249,120 - -1.8 249,120 - +1.2 249,120 - -0.9 249,120 - -0.4 249,202 + +1.6 249,202 + -0.4 249,202 + -3.7 249,202 + -1.2 249,202 + -1.5 249,202 + +0.5 249,202 + -1.1 249,202 + -0.6 249,203 - -3.7 249,203 - -0.6 249,203 - -0.5 249,203 - +2.9 249,203 - +0.3 249,203 - +0.1 249,203 - +1.1 249,203 - -0.0 249,216 - +0.7 249,216 - +0.3 249,216 - +0.7 249,216 - -2.2 249,216 - -3.4 249,216 - -0.2 249,339 - -0.5 249,355 + -1.1 249,355 + -1.5 249,355 + +0.1 249,355 + -2.0 249,355 + -1.9 249,356 - -2.2 249,356 - +1.0 249,356 - +0.6 249,356 - -1.8 249,356 - -1.9 249,356 - +2.1 249,381 + -1.9 249,381 + -3.5 249,381 + -0.1 249,381 + -2.3 249,401 + -0.2 249,401 + -1.5 249,401 + -3.6 249,401 + -1.2 249,401 + -2.5 249,401 + -1.3 249,401 + -0.9 249,402 - -2.4 249,402 - -1.5 249,402 - -0.1 249,402 - +0.1 249,402 - -1.1 249,402 - -0.9 249,402 - +0.2 249,402 - +0.7 249,402 - +0.4 249,402 - -1.3 249,402 - -1.6 249,471 + +0.7 249,471 + -0.2 249,471 + -2.0 249,471 + +0.2 249,472 - -2.0 249,472 - -0.9 249,571 + -0.6 249,571 + +0.1 249,571 + +0.7 249,571 + -0.1 249,572 - -2.8 249,572 - -2.1 249,635 + GFF4881 0.31 +2.5 249,636 - GFF4881 0.31 +0.7 249,736 + GFF4881 0.79 -2.1 249,736 + GFF4881 0.79 +0.0 249,736 + GFF4881 0.79 -0.0 249,736 + GFF4881 0.79 -2.9 249,736 + GFF4881 0.79 -1.3 249,736 + GFF4881 0.79 -0.1 249,736 + GFF4881 0.79 -2.3 249,736 + GFF4881 0.79 +0.8 249,737 - GFF4881 0.80 +1.4 249,737 - GFF4881 0.80 -2.3 249,737 - GFF4881 0.80 +1.7 249,737 - GFF4881 0.80 -0.0 249,737 - GFF4881 0.80 +0.0 249,737 - GFF4881 0.80 -0.1 249,737 - GFF4881 0.80 +0.8 249,737 - GFF4881 0.80 -1.1 249,737 - GFF4881 0.80 -0.6 249,737 - GFF4881 0.80 +1.5 250,086 + GFF4882 0.12 +2.7 250,086 + GFF4882 0.12 +0.6 250,087 - GFF4882 0.12 -0.4 250,087 - GFF4882 0.12 -2.2 250,087 - GFF4882 0.12 -1.3 250,087 - GFF4882 0.12 +0.8 250,087 - GFF4882 0.12 -0.9 250,283 + GFF4882 0.22 -2.1 250,284 - GFF4882 0.22 +3.2 250,284 - GFF4882 0.22 -0.1 250,284 - GFF4882 0.22 +0.1 250,400 + GFF4882 0.27 +0.8 250,400 + GFF4882 0.27 -0.5 250,400 + GFF4882 0.27 +0.0 250,400 + GFF4882 0.27 -0.3 250,400 + GFF4882 0.27 -0.7 250,400 + GFF4882 0.27 +4.3 250,413 + GFF4882 0.28 -0.3 250,413 + GFF4882 0.28 +1.7 250,413 + GFF4882 0.28 -1.7 250,414 - GFF4882 0.28 -1.1 250,414 - GFF4882 0.28 +0.1 250,414 - GFF4882 0.28 -1.1 250,414 - GFF4882 0.28 +3.0 250,414 - GFF4882 0.28 +0.7 250,416 + GFF4882 0.28 -0.3 250,416 + GFF4882 0.28 +1.7 250,416 + GFF4882 0.28 -2.7 250,416 + GFF4882 0.28 +0.7 250,416 + GFF4882 0.28 -1.3 250,416 + GFF4882 0.28 +0.2 250,417 - GFF4882 0.28 -1.5 250,417 - GFF4882 0.28 -3.1 250,417 - GFF4882 0.28 +1.0 250,417 - GFF4882 0.28 +0.3 250,417 - GFF4882 0.28 +0.5 250,620 - GFF4882 0.38 +0.5 250,620 - GFF4882 0.38 +0.4 250,749 + GFF4882 0.44 +2.0 250,749 + GFF4882 0.44 -0.8 250,749 + GFF4882 0.44 +1.0 250,750 - GFF4882 0.45 +1.0 250,750 - GFF4882 0.45 -1.3
Or see this region's nucleotide sequence