Strain Fitness in Variovorax sp. SCN45 around GFF4804

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4803 and GFF4804 overlap by 4 nucleotidesGFF4804 and GFF4805 are separated by 45 nucleotides GFF4803 - N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28), at 173,339 to 174,829 GFF4803 GFF4804 - tRNA threonylcarbamoyladenosine biosynthesis protein TsaE, at 174,826 to 175,383 GFF4804 GFF4805 - Epoxyqueuosine reductase (EC 1.17.99.6) QueG, at 175,429 to 176,391 GFF4805 Position (kb) 174 175 176Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 174.130 kb on + strand, within GFF4803at 174.130 kb on + strand, within GFF4803at 174.130 kb on + strand, within GFF4803at 174.130 kb on + strand, within GFF4803at 174.296 kb on - strand, within GFF4803at 174.296 kb on - strand, within GFF4803at 174.296 kb on - strand, within GFF4803at 174.296 kb on - strand, within GFF4803at 174.296 kb on - strand, within GFF4803at 174.296 kb on - strand, within GFF4803at 174.414 kb on + strand, within GFF4803at 174.415 kb on - strand, within GFF4803at 174.441 kb on + strand, within GFF4803at 174.441 kb on + strand, within GFF4803at 174.442 kb on - strand, within GFF4803at 174.552 kb on + strand, within GFF4803at 174.552 kb on + strand, within GFF4803at 174.552 kb on + strand, within GFF4803at 174.552 kb on + strand, within GFF4803at 174.552 kb on + strand, within GFF4803at 174.552 kb on + strand, within GFF4803at 174.553 kb on - strand, within GFF4803at 174.553 kb on - strand, within GFF4803at 174.553 kb on - strand, within GFF4803at 174.553 kb on - strand, within GFF4803at 174.553 kb on - strand, within GFF4803at 174.553 kb on - strand, within GFF4803at 174.553 kb on - strand, within GFF4803at 174.554 kb on - strand, within GFF4803at 174.702 kb on + strandat 174.702 kb on + strandat 174.702 kb on + strandat 174.702 kb on + strandat 174.703 kb on - strandat 174.703 kb on - strandat 174.703 kb on - strandat 174.703 kb on - strandat 175.306 kb on + strand, within GFF4804at 175.306 kb on + strand, within GFF4804at 175.306 kb on + strand, within GFF4804at 175.348 kb on - strandat 175.348 kb on - strandat 175.407 kb on - strandat 175.407 kb on - strandat 175.407 kb on - strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.469 kb on - strandat 175.469 kb on - strandat 175.469 kb on - strandat 175.552 kb on + strand, within GFF4805at 175.552 kb on + strand, within GFF4805at 175.552 kb on + strand, within GFF4805at 175.552 kb on + strand, within GFF4805at 175.552 kb on + strand, within GFF4805at 175.553 kb on - strand, within GFF4805at 175.553 kb on - strand, within GFF4805at 175.553 kb on - strand, within GFF4805at 175.553 kb on - strand, within GFF4805at 175.553 kb on - strand, within GFF4805at 175.553 kb on - strand, within GFF4805at 175.636 kb on + strand, within GFF4805at 175.636 kb on + strand, within GFF4805at 175.636 kb on + strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.654 kb on + strand, within GFF4805at 175.654 kb on + strand, within GFF4805at 175.654 kb on + strand, within GFF4805at 175.654 kb on + strand, within GFF4805at 175.655 kb on - strand, within GFF4805at 175.655 kb on - strand, within GFF4805at 175.655 kb on - strand, within GFF4805at 175.655 kb on - strand, within GFF4805at 175.655 kb on - strand, within GFF4805at 175.655 kb on - strand, within GFF4805at 175.858 kb on + strand, within GFF4805at 175.858 kb on + strand, within GFF4805at 175.858 kb on + strand, within GFF4805at 175.858 kb on + strand, within GFF4805at 175.858 kb on + strand, within GFF4805at 175.858 kb on + strand, within GFF4805at 175.858 kb on + strand, within GFF4805at 175.859 kb on - strand, within GFF4805at 175.859 kb on - strand, within GFF4805at 175.988 kb on - strand, within GFF4805at 175.990 kb on + strand, within GFF4805at 175.991 kb on - strand, within GFF4805at 176.056 kb on + strand, within GFF4805at 176.056 kb on + strand, within GFF4805at 176.056 kb on + strand, within GFF4805at 176.056 kb on + strand, within GFF4805at 176.056 kb on + strand, within GFF4805at 176.057 kb on - strand, within GFF4805at 176.057 kb on - strand, within GFF4805at 176.057 kb on - strand, within GFF4805at 176.058 kb on - strand, within GFF4805

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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174,130 + GFF4803 0.53 -1.1
174,130 + GFF4803 0.53 -1.3
174,130 + GFF4803 0.53 -0.6
174,130 + GFF4803 0.53 +1.7
174,296 - GFF4803 0.64 -1.5
174,296 - GFF4803 0.64 -2.1
174,296 - GFF4803 0.64 +0.7
174,296 - GFF4803 0.64 -1.1
174,296 - GFF4803 0.64 -0.9
174,296 - GFF4803 0.64 -2.1
174,414 + GFF4803 0.72 -2.3
174,415 - GFF4803 0.72 -2.9
174,441 + GFF4803 0.74 -1.9
174,441 + GFF4803 0.74 +0.1
174,442 - GFF4803 0.74 +0.7
174,552 + GFF4803 0.81 -2.3
174,552 + GFF4803 0.81 -3.3
174,552 + GFF4803 0.81 -0.6
174,552 + GFF4803 0.81 +0.5
174,552 + GFF4803 0.81 -2.5
174,552 + GFF4803 0.81 -2.9
174,553 - GFF4803 0.81 -0.3
174,553 - GFF4803 0.81 +1.7
174,553 - GFF4803 0.81 -0.3
174,553 - GFF4803 0.81 -0.6
174,553 - GFF4803 0.81 -1.3
174,553 - GFF4803 0.81 +3.2
174,553 - GFF4803 0.81 +0.7
174,554 - GFF4803 0.81 -0.6
174,702 + -0.9
174,702 + +0.1
174,702 + -2.5
174,702 + -0.9
174,703 - -1.5
174,703 - -2.1
174,703 - +0.1
174,703 - +0.7
175,306 + GFF4804 0.86 -3.6
175,306 + GFF4804 0.86 +2.5
175,306 + GFF4804 0.86 +1.7
175,348 - -0.6
175,348 - -2.0
175,407 - +0.5
175,407 - -1.4
175,407 - -1.5
175,468 + +0.6
175,468 + +0.9
175,468 + +0.1
175,468 + +0.7
175,468 + -0.1
175,468 + +0.3
175,468 + -2.1
175,468 + +0.7
175,468 + -0.1
175,468 + +0.6
175,468 + -1.9
175,468 + -0.7
175,468 + +1.7
175,468 + -2.8
175,468 + +0.7
175,469 - +0.0
175,469 - -1.3
175,469 - -0.7
175,552 + GFF4805 0.13 -2.7
175,552 + GFF4805 0.13 +0.0
175,552 + GFF4805 0.13 -0.8
175,552 + GFF4805 0.13 +0.7
175,552 + GFF4805 0.13 -0.6
175,553 - GFF4805 0.13 +2.1
175,553 - GFF4805 0.13 -0.6
175,553 - GFF4805 0.13 -0.7
175,553 - GFF4805 0.13 +1.5
175,553 - GFF4805 0.13 -2.6
175,553 - GFF4805 0.13 -0.2
175,636 + GFF4805 0.21 +0.4
175,636 + GFF4805 0.21 -0.6
175,636 + GFF4805 0.21 +0.3
175,637 - GFF4805 0.22 +1.5
175,637 - GFF4805 0.22 -0.9
175,637 - GFF4805 0.22 -1.2
175,637 - GFF4805 0.22 -0.2
175,637 - GFF4805 0.22 -2.7
175,637 - GFF4805 0.22 -1.1
175,637 - GFF4805 0.22 +1.9
175,637 - GFF4805 0.22 -3.7
175,637 - GFF4805 0.22 -0.5
175,637 - GFF4805 0.22 -2.8
175,637 - GFF4805 0.22 -0.8
175,637 - GFF4805 0.22 +0.6
175,637 - GFF4805 0.22 -0.3
175,654 + GFF4805 0.23 +0.3
175,654 + GFF4805 0.23 -1.6
175,654 + GFF4805 0.23 +4.3
175,654 + GFF4805 0.23 -0.5
175,655 - GFF4805 0.23 +0.5
175,655 - GFF4805 0.23 -0.2
175,655 - GFF4805 0.23 +1.7
175,655 - GFF4805 0.23 +0.1
175,655 - GFF4805 0.23 -2.5
175,655 - GFF4805 0.23 -0.9
175,858 + GFF4805 0.45 -1.4
175,858 + GFF4805 0.45 -0.3
175,858 + GFF4805 0.45 +2.3
175,858 + GFF4805 0.45 +0.7
175,858 + GFF4805 0.45 +1.7
175,858 + GFF4805 0.45 -3.0
175,858 + GFF4805 0.45 -2.0
175,859 - GFF4805 0.45 +1.3
175,859 - GFF4805 0.45 -0.7
175,988 - GFF4805 0.58 +1.3
175,990 + GFF4805 0.58 -3.4
175,991 - GFF4805 0.58 +0.2
176,056 + GFF4805 0.65 +0.6
176,056 + GFF4805 0.65 -1.7
176,056 + GFF4805 0.65 -1.7
176,056 + GFF4805 0.65 -1.9
176,056 + GFF4805 0.65 -0.4
176,057 - GFF4805 0.65 -2.9
176,057 - GFF4805 0.65 +2.9
176,057 - GFF4805 0.65 +1.4
176,058 - GFF4805 0.65 -1.6

Or see this region's nucleotide sequence