Strain Fitness in Variovorax sp. SCN45 around GFF4775

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
142,353	-		GFF4773	0.85	-0.3
142,388	-		GFF4773	0.90	-1.9
142,388	-		GFF4773	0.90	-0.3
142,426	+				+1.7
142,427	-				-3.5
142,427	-				-3.0
142,427	-				-2.4
142,427	-				-1.7
142,823	+		GFF4774	0.50	-1.7
142,823	+		GFF4774	0.50	+0.1
142,823	+		GFF4774	0.50	-2.9
142,823	+		GFF4774	0.50	+0.9
142,823	+		GFF4774	0.50	-1.9
142,824	-		GFF4774	0.50	-1.2
142,824	-		GFF4774	0.50	-0.6
142,824	-		GFF4774	0.50	-3.4
142,824	-		GFF4774	0.50	-0.9
142,824	-		GFF4774	0.50	-0.4
142,824	-		GFF4774	0.50	-1.9
142,824	-		GFF4774	0.50	+0.7
143,024	+		GFF4774	0.78	-0.1
143,024	+		GFF4774	0.78	-1.5
143,024	+		GFF4774	0.78	-1.3
143,024	+		GFF4774	0.78	-2.1
143,025	-		GFF4774	0.79	-0.9
143,025	-		GFF4774	0.79	+0.5
143,085	-		GFF4774	0.87	-1.1
143,358	+				-2.7
143,358	+				-3.6
143,359	-				-0.8
143,601	+		GFF4775	0.30	-0.9
143,601	+		GFF4775	0.30	-1.6
143,602	-		GFF4775	0.30	+0.7
143,602	-		GFF4775	0.30	-0.8
143,656	-		GFF4775	0.35	+0.5
143,656	-		GFF4775	0.35	+0.6
143,757	+		GFF4775	0.43	-0.0
143,757	+		GFF4775	0.43	-0.8
144,069	+		GFF4775	0.69	+1.7
144,069	+		GFF4775	0.69	-2.1
144,160	-		GFF4775	0.77	-3.0
144,177	+		GFF4775	0.78	-2.7
144,178	-		GFF4775	0.78	-1.7
144,262	-		GFF4775	0.85	-4.3
144,309	+		GFF4775	0.89	-1.4
144,309	+		GFF4775	0.89	-2.0
144,309	+		GFF4775	0.89	+0.4
144,309	+		GFF4775	0.89	-0.2
144,309	+		GFF4775	0.89	-1.3
144,309	+		GFF4775	0.89	-1.3
144,310	-		GFF4775	0.89	-1.4
144,310	-		GFF4775	0.89	-2.4
144,310	-		GFF4775	0.89	+4.2
144,357	+				-0.2
144,357	+				-0.9
144,358	-				+3.1
144,436	-				-1.0
144,682	+				-3.1
144,683	-				-0.6
144,683	-				-1.5
144,991	+		GFF4776	0.35	-1.1
144,992	-		GFF4776	0.36	-2.6
144,997	+		GFF4776	0.36	-1.7
145,081	+		GFF4776	0.43	-3.0
145,082	-		GFF4776	0.43	-2.5
145,173	+		GFF4776	0.51	-3.0
145,173	+		GFF4776	0.51	-0.5
145,173	+		GFF4776	0.51	-1.7