Strain Fitness in Variovorax sp. SCN45 around GFF4714

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4713 and GFF4714 are separated by 11 nucleotidesGFF4714 and GFF4715 overlap by 1 nucleotides GFF4713 - Uncharacterized protein YhiN, at 75,263 to 76,468 GFF4713 GFF4714 - putative lipoprotein, at 76,480 to 77,271 GFF4714 GFF4715 - Fatty acid hydroxylase family (carotene hydroxylase/sterol desaturase), at 77,271 to 78,401 GFF4715 Position (kb) 76 77 78Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 75.706 kb on - strand, within GFF4713at 75.706 kb on - strand, within GFF4713at 75.706 kb on - strand, within GFF4713at 75.706 kb on - strand, within GFF4713at 75.706 kb on - strand, within GFF4713at 75.841 kb on - strand, within GFF4713at 75.841 kb on - strand, within GFF4713at 75.876 kb on - strand, within GFF4713at 75.876 kb on - strand, within GFF4713at 76.029 kb on + strand, within GFF4713at 76.053 kb on - strand, within GFF4713at 76.053 kb on - strand, within GFF4713at 76.225 kb on - strand, within GFF4713at 76.517 kb on + strandat 76.517 kb on + strandat 76.517 kb on + strandat 76.517 kb on + strandat 76.517 kb on + strandat 76.517 kb on + strandat 76.517 kb on + strandat 76.517 kb on + strandat 76.518 kb on - strandat 76.518 kb on - strandat 76.518 kb on - strandat 76.535 kb on + strandat 76.535 kb on + strandat 76.535 kb on + strandat 76.536 kb on - strandat 76.536 kb on - strandat 76.536 kb on - strandat 76.653 kb on - strand, within GFF4714at 76.653 kb on - strand, within GFF4714at 76.653 kb on - strand, within GFF4714at 76.736 kb on + strand, within GFF4714at 76.736 kb on + strand, within GFF4714at 76.737 kb on - strand, within GFF4714at 76.737 kb on - strand, within GFF4714at 76.737 kb on - strand, within GFF4714at 76.737 kb on - strand, within GFF4714at 76.737 kb on - strand, within GFF4714at 76.826 kb on + strand, within GFF4714at 76.826 kb on + strand, within GFF4714at 76.827 kb on - strand, within GFF4714at 76.827 kb on - strand, within GFF4714at 76.827 kb on - strand, within GFF4714at 76.827 kb on - strand, within GFF4714at 76.827 kb on - strand, within GFF4714at 76.997 kb on + strand, within GFF4714at 76.997 kb on + strand, within GFF4714at 76.997 kb on + strand, within GFF4714at 76.998 kb on - strand, within GFF4714at 76.998 kb on - strand, within GFF4714at 76.998 kb on - strand, within GFF4714at 76.998 kb on - strand, within GFF4714at 76.998 kb on - strand, within GFF4714at 77.212 kb on + strandat 77.212 kb on + strandat 77.213 kb on - strandat 77.326 kb on + strandat 77.327 kb on - strandat 77.327 kb on - strandat 77.327 kb on - strandat 77.344 kb on + strandat 77.344 kb on + strandat 77.344 kb on + strandat 77.345 kb on - strandat 77.345 kb on - strandat 77.345 kb on - strandat 77.345 kb on - strandat 77.345 kb on - strandat 77.392 kb on + strand, within GFF4715at 77.392 kb on + strand, within GFF4715at 77.392 kb on + strand, within GFF4715at 77.392 kb on + strand, within GFF4715at 77.392 kb on + strand, within GFF4715at 77.393 kb on - strand, within GFF4715at 77.393 kb on - strand, within GFF4715at 77.393 kb on - strand, within GFF4715at 77.393 kb on - strand, within GFF4715at 77.393 kb on - strand, within GFF4715at 77.393 kb on - strand, within GFF4715at 77.393 kb on - strand, within GFF4715at 77.393 kb on - strand, within GFF4715at 77.393 kb on - strand, within GFF4715at 77.393 kb on - strand, within GFF4715at 77.393 kb on - strand, within GFF4715at 77.407 kb on + strand, within GFF4715at 77.407 kb on + strand, within GFF4715at 77.407 kb on + strand, within GFF4715at 77.407 kb on + strand, within GFF4715at 77.407 kb on + strand, within GFF4715at 77.408 kb on - strand, within GFF4715at 77.419 kb on + strand, within GFF4715at 77.419 kb on + strand, within GFF4715at 77.419 kb on + strand, within GFF4715at 77.419 kb on + strand, within GFF4715at 77.420 kb on - strand, within GFF4715at 77.420 kb on - strand, within GFF4715at 77.420 kb on - strand, within GFF4715at 77.420 kb on - strand, within GFF4715at 77.420 kb on - strand, within GFF4715at 77.420 kb on - strand, within GFF4715at 77.488 kb on + strand, within GFF4715at 77.489 kb on - strand, within GFF4715at 77.489 kb on - strand, within GFF4715at 77.489 kb on - strand, within GFF4715at 77.560 kb on + strand, within GFF4715at 77.560 kb on + strand, within GFF4715at 77.560 kb on + strand, within GFF4715at 77.560 kb on + strand, within GFF4715at 77.560 kb on + strand, within GFF4715at 77.560 kb on + strand, within GFF4715at 77.560 kb on + strand, within GFF4715at 77.560 kb on + strand, within GFF4715at 77.560 kb on + strand, within GFF4715at 77.561 kb on - strand, within GFF4715at 77.596 kb on + strand, within GFF4715at 77.596 kb on + strand, within GFF4715at 77.596 kb on + strand, within GFF4715at 77.596 kb on + strand, within GFF4715at 77.596 kb on + strand, within GFF4715at 77.596 kb on + strand, within GFF4715at 77.596 kb on + strand, within GFF4715at 77.596 kb on + strand, within GFF4715at 77.597 kb on - strand, within GFF4715at 77.597 kb on - strand, within GFF4715at 77.597 kb on - strand, within GFF4715at 77.597 kb on - strand, within GFF4715at 77.597 kb on - strand, within GFF4715at 77.597 kb on - strand, within GFF4715at 77.597 kb on - strand, within GFF4715at 77.597 kb on - strand, within GFF4715at 77.597 kb on - strand, within GFF4715at 77.597 kb on - strand, within GFF4715at 77.597 kb on - strand, within GFF4715at 77.728 kb on + strand, within GFF4715at 77.728 kb on + strand, within GFF4715at 77.729 kb on - strand, within GFF4715at 77.729 kb on - strand, within GFF4715at 77.746 kb on + strand, within GFF4715at 77.746 kb on + strand, within GFF4715at 77.747 kb on - strand, within GFF4715at 77.747 kb on - strand, within GFF4715at 77.747 kb on - strand, within GFF4715at 77.747 kb on - strand, within GFF4715at 78.043 kb on + strand, within GFF4715at 78.043 kb on + strand, within GFF4715at 78.043 kb on + strand, within GFF4715at 78.043 kb on + strand, within GFF4715at 78.043 kb on + strand, within GFF4715at 78.208 kb on + strand, within GFF4715at 78.208 kb on + strand, within GFF4715at 78.208 kb on + strand, within GFF4715at 78.208 kb on + strand, within GFF4715at 78.209 kb on - strand, within GFF4715at 78.209 kb on - strand, within GFF4715at 78.209 kb on - strand, within GFF4715at 78.209 kb on - strand, within GFF4715at 78.209 kb on - strand, within GFF4715at 78.209 kb on - strand, within GFF4715at 78.209 kb on - strand, within GFF4715at 78.209 kb on - strand, within GFF4715at 78.229 kb on + strand, within GFF4715at 78.229 kb on + strand, within GFF4715at 78.229 kb on + strand, within GFF4715at 78.230 kb on - strand, within GFF4715at 78.230 kb on - strand, within GFF4715at 78.230 kb on - strand, within GFF4715at 78.230 kb on - strand, within GFF4715at 78.230 kb on - strand, within GFF4715at 78.230 kb on - strand, within GFF4715at 78.259 kb on + strand, within GFF4715at 78.260 kb on - strand, within GFF4715at 78.260 kb on - strand, within GFF4715at 78.260 kb on - strand, within GFF4715at 78.260 kb on - strand, within GFF4715at 78.260 kb on - strand, within GFF4715

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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75,706 - GFF4713 0.37 -1.3
75,706 - GFF4713 0.37 -0.1
75,706 - GFF4713 0.37 -2.8
75,706 - GFF4713 0.37 -1.6
75,706 - GFF4713 0.37 -1.3
75,841 - GFF4713 0.48 +1.1
75,841 - GFF4713 0.48 -1.9
75,876 - GFF4713 0.51 -1.1
75,876 - GFF4713 0.51 +0.0
76,029 + GFF4713 0.64 -1.2
76,053 - GFF4713 0.66 -2.4
76,053 - GFF4713 0.66 +1.0
76,225 - GFF4713 0.80 +0.1
76,517 + +1.1
76,517 + -1.1
76,517 + -1.3
76,517 + -2.0
76,517 + +1.7
76,517 + -2.4
76,517 + -0.5
76,517 + +0.1
76,518 - -0.1
76,518 - -0.9
76,518 - +2.6
76,535 + -2.1
76,535 + -0.5
76,535 + +0.6
76,536 - -1.3
76,536 - -0.6
76,536 - -1.0
76,653 - GFF4714 0.22 +0.6
76,653 - GFF4714 0.22 -1.5
76,653 - GFF4714 0.22 -2.9
76,736 + GFF4714 0.32 +2.3
76,736 + GFF4714 0.32 +0.4
76,737 - GFF4714 0.32 -0.6
76,737 - GFF4714 0.32 -3.3
76,737 - GFF4714 0.32 +0.4
76,737 - GFF4714 0.32 -2.1
76,737 - GFF4714 0.32 -1.0
76,826 + GFF4714 0.44 -1.1
76,826 + GFF4714 0.44 +0.2
76,827 - GFF4714 0.44 +0.7
76,827 - GFF4714 0.44 -0.8
76,827 - GFF4714 0.44 +0.2
76,827 - GFF4714 0.44 +2.0
76,827 - GFF4714 0.44 +2.7
76,997 + GFF4714 0.65 +0.6
76,997 + GFF4714 0.65 +0.0
76,997 + GFF4714 0.65 +0.0
76,998 - GFF4714 0.65 -1.7
76,998 - GFF4714 0.65 -0.9
76,998 - GFF4714 0.65 +0.9
76,998 - GFF4714 0.65 -2.4
76,998 - GFF4714 0.65 +0.3
77,212 + +1.0
77,212 + +0.1
77,213 - +1.4
77,326 + -4.0
77,327 - -1.3
77,327 - -1.7
77,327 - +1.6
77,344 + -2.9
77,344 + -0.5
77,344 + -3.0
77,345 - -2.0
77,345 - -0.3
77,345 - -3.2
77,345 - -0.9
77,345 - -0.9
77,392 + GFF4715 0.11 +0.7
77,392 + GFF4715 0.11 +0.1
77,392 + GFF4715 0.11 -0.6
77,392 + GFF4715 0.11 -0.6
77,392 + GFF4715 0.11 -2.0
77,393 - GFF4715 0.11 +0.0
77,393 - GFF4715 0.11 -1.4
77,393 - GFF4715 0.11 -3.5
77,393 - GFF4715 0.11 -0.3
77,393 - GFF4715 0.11 -3.7
77,393 - GFF4715 0.11 +0.8
77,393 - GFF4715 0.11 -0.3
77,393 - GFF4715 0.11 +1.1
77,393 - GFF4715 0.11 +2.2
77,393 - GFF4715 0.11 -2.2
77,393 - GFF4715 0.11 +0.4
77,407 + GFF4715 0.12 -2.7
77,407 + GFF4715 0.12 +0.9
77,407 + GFF4715 0.12 +0.4
77,407 + GFF4715 0.12 +1.6
77,407 + GFF4715 0.12 -1.4
77,408 - GFF4715 0.12 -1.7
77,419 + GFF4715 0.13 +0.8
77,419 + GFF4715 0.13 -2.9
77,419 + GFF4715 0.13 -1.6
77,419 + GFF4715 0.13 -0.5
77,420 - GFF4715 0.13 -1.3
77,420 - GFF4715 0.13 +0.1
77,420 - GFF4715 0.13 -1.1
77,420 - GFF4715 0.13 +0.1
77,420 - GFF4715 0.13 +1.4
77,420 - GFF4715 0.13 -1.6
77,488 + GFF4715 0.19 -0.4
77,489 - GFF4715 0.19 +0.5
77,489 - GFF4715 0.19 -2.0
77,489 - GFF4715 0.19 -1.5
77,560 + GFF4715 0.26 +0.1
77,560 + GFF4715 0.26 -3.4
77,560 + GFF4715 0.26 +0.5
77,560 + GFF4715 0.26 -1.4
77,560 + GFF4715 0.26 +1.7
77,560 + GFF4715 0.26 +0.9
77,560 + GFF4715 0.26 -0.6
77,560 + GFF4715 0.26 -1.7
77,560 + GFF4715 0.26 -0.3
77,561 - GFF4715 0.26 -0.9
77,596 + GFF4715 0.29 -1.5
77,596 + GFF4715 0.29 +1.4
77,596 + GFF4715 0.29 -0.7
77,596 + GFF4715 0.29 +1.1
77,596 + GFF4715 0.29 -1.0
77,596 + GFF4715 0.29 +0.4
77,596 + GFF4715 0.29 +0.8
77,596 + GFF4715 0.29 -0.2
77,597 - GFF4715 0.29 -0.1
77,597 - GFF4715 0.29 -0.2
77,597 - GFF4715 0.29 +0.8
77,597 - GFF4715 0.29 -0.9
77,597 - GFF4715 0.29 +0.7
77,597 - GFF4715 0.29 +0.4
77,597 - GFF4715 0.29 -2.3
77,597 - GFF4715 0.29 +1.0
77,597 - GFF4715 0.29 -2.1
77,597 - GFF4715 0.29 -1.3
77,597 - GFF4715 0.29 -0.8
77,728 + GFF4715 0.40 -0.4
77,728 + GFF4715 0.40 -0.8
77,729 - GFF4715 0.40 -3.3
77,729 - GFF4715 0.40 +0.9
77,746 + GFF4715 0.42 +0.4
77,746 + GFF4715 0.42 +0.3
77,747 - GFF4715 0.42 +0.5
77,747 - GFF4715 0.42 -2.5
77,747 - GFF4715 0.42 -0.3
77,747 - GFF4715 0.42 +1.1
78,043 + GFF4715 0.68 +0.6
78,043 + GFF4715 0.68 -0.3
78,043 + GFF4715 0.68 -2.1
78,043 + GFF4715 0.68 +0.4
78,043 + GFF4715 0.68 +2.3
78,208 + GFF4715 0.83 -1.6
78,208 + GFF4715 0.83 -1.3
78,208 + GFF4715 0.83 -0.1
78,208 + GFF4715 0.83 +2.1
78,209 - GFF4715 0.83 -2.2
78,209 - GFF4715 0.83 +0.1
78,209 - GFF4715 0.83 -0.3
78,209 - GFF4715 0.83 +1.7
78,209 - GFF4715 0.83 -0.0
78,209 - GFF4715 0.83 -0.3
78,209 - GFF4715 0.83 +0.7
78,209 - GFF4715 0.83 -0.5
78,229 + GFF4715 0.85 -0.6
78,229 + GFF4715 0.85 -2.0
78,229 + GFF4715 0.85 +1.4
78,230 - GFF4715 0.85 -0.0
78,230 - GFF4715 0.85 +0.3
78,230 - GFF4715 0.85 +1.3
78,230 - GFF4715 0.85 -2.1
78,230 - GFF4715 0.85 +1.7
78,230 - GFF4715 0.85 -0.2
78,259 + GFF4715 0.87 +0.7
78,260 - GFF4715 0.87 -1.0
78,260 - GFF4715 0.87 -2.2
78,260 - GFF4715 0.87 -1.9
78,260 - GFF4715 0.87 -3.8
78,260 - GFF4715 0.87 -0.3

Or see this region's nucleotide sequence