Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4669 and GFF4670 are separated by 89 nucleotides GFF4670 and GFF4671 overlap by 4 nucleotides
GFF4669 - Pca operon transcriptional activator PcaQ, at 26,335 to 27,264
GFF4669
GFF4670 - Transcriptional regulator, AcrR family, at 27,354 to 27,959
GFF4670
GFF4671 - putative membrane protein, at 27,956 to 29,167
GFF4671
Position (kb) 27
28 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 27.292 kb on + strand at 27.319 kb on + strand at 27.319 kb on + strand at 27.505 kb on - strand, within GFF4670 at 27.571 kb on - strand, within GFF4670 at 27.571 kb on - strand, within GFF4670 at 27.661 kb on + strand, within GFF4670 at 27.661 kb on - strand, within GFF4670 at 27.661 kb on - strand, within GFF4670 at 27.661 kb on - strand, within GFF4670 at 27.781 kb on + strand, within GFF4670 at 27.782 kb on - strand, within GFF4670 at 28.067 kb on + strand at 28.068 kb on - strand at 28.157 kb on + strand, within GFF4671 at 28.157 kb on + strand, within GFF4671 at 28.158 kb on - strand, within GFF4671 at 28.158 kb on - strand, within GFF4671 at 28.158 kb on - strand, within GFF4671 at 28.185 kb on - strand, within GFF4671 at 28.185 kb on - strand, within GFF4671 at 28.294 kb on - strand, within GFF4671 at 28.301 kb on + strand, within GFF4671 at 28.302 kb on - strand, within GFF4671 at 28.325 kb on + strand, within GFF4671 at 28.325 kb on + strand, within GFF4671 at 28.325 kb on + strand, within GFF4671 at 28.326 kb on - strand, within GFF4671 at 28.440 kb on - strand, within GFF4671 at 28.829 kb on + strand, within GFF4671 at 28.829 kb on + strand, within GFF4671 at 28.829 kb on + strand, within GFF4671 at 28.830 kb on - strand, within GFF4671 at 28.922 kb on + strand, within GFF4671 at 28.922 kb on + strand, within GFF4671 at 28.922 kb on + strand, within GFF4671 at 28.923 kb on - strand, within GFF4671
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 27,292 + -1.7 27,319 + -2.6 27,319 + -0.9 27,505 - GFF4670 0.25 -0.8 27,571 - GFF4670 0.36 -1.3 27,571 - GFF4670 0.36 -1.1 27,661 + GFF4670 0.51 -3.3 27,661 - GFF4670 0.51 +0.1 27,661 - GFF4670 0.51 +2.0 27,661 - GFF4670 0.51 -1.1 27,781 + GFF4670 0.70 -2.9 27,782 - GFF4670 0.71 -1.2 28,067 + +0.1 28,068 - +1.3 28,157 + GFF4671 0.17 +1.3 28,157 + GFF4671 0.17 -1.1 28,158 - GFF4671 0.17 -1.3 28,158 - GFF4671 0.17 +0.6 28,158 - GFF4671 0.17 +0.4 28,185 - GFF4671 0.19 -1.0 28,185 - GFF4671 0.19 -1.4 28,294 - GFF4671 0.28 +1.7 28,301 + GFF4671 0.28 -2.1 28,302 - GFF4671 0.29 -0.5 28,325 + GFF4671 0.30 +0.9 28,325 + GFF4671 0.30 -2.9 28,325 + GFF4671 0.30 +0.7 28,326 - GFF4671 0.31 +0.1 28,440 - GFF4671 0.40 -1.3 28,829 + GFF4671 0.72 +0.4 28,829 + GFF4671 0.72 -0.2 28,829 + GFF4671 0.72 -1.7 28,830 - GFF4671 0.72 -1.2 28,922 + GFF4671 0.80 +0.5 28,922 + GFF4671 0.80 +0.7 28,922 + GFF4671 0.80 +1.4 28,923 - GFF4671 0.80 -3.5
Or see this region's nucleotide sequence