Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4659 and GFF4660 are separated by 0 nucleotides GFF4660 and GFF4661 overlap by 32 nucleotides GFF4661 and GFF4662 are separated by 651 nucleotides GFF4662 and GFF4663 are separated by 106 nucleotides
GFF4659 - no description, at 17,567 to 17,686
GFF4659
GFF4660 - hypothetical protein, at 17,687 to 18,610
GFF4660
GFF4661 - no description, at 18,579 to 19,871
GFF4661
GFF4662 - no description, at 20,523 to 20,741
GFF4662
GFF4663 - no description, at 20,848 to 20,976
GFF4663
Position (kb) 18
19
20 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 17.649 kb on + strand, within GFF4659 at 17.649 kb on + strand, within GFF4659 at 17.649 kb on + strand, within GFF4659 at 17.649 kb on + strand, within GFF4659 at 17.649 kb on + strand, within GFF4659 at 17.650 kb on - strand, within GFF4659 at 17.650 kb on - strand, within GFF4659 at 17.650 kb on - strand, within GFF4659 at 17.650 kb on - strand, within GFF4659 at 17.712 kb on + strand at 17.713 kb on - strand at 17.900 kb on + strand, within GFF4660 at 17.900 kb on + strand, within GFF4660 at 17.900 kb on + strand, within GFF4660 at 17.901 kb on - strand, within GFF4660 at 17.901 kb on - strand, within GFF4660 at 17.901 kb on - strand, within GFF4660 at 17.961 kb on + strand, within GFF4660 at 17.961 kb on + strand, within GFF4660 at 17.961 kb on + strand, within GFF4660 at 17.961 kb on + strand, within GFF4660 at 17.961 kb on + strand, within GFF4660 at 17.961 kb on + strand, within GFF4660 at 17.961 kb on + strand, within GFF4660 at 17.961 kb on + strand, within GFF4660 at 17.962 kb on - strand, within GFF4660 at 17.962 kb on - strand, within GFF4660 at 17.962 kb on - strand, within GFF4660 at 17.962 kb on - strand, within GFF4660 at 17.962 kb on - strand, within GFF4660 at 17.962 kb on - strand, within GFF4660 at 17.962 kb on - strand, within GFF4660 at 18.002 kb on + strand, within GFF4660 at 18.002 kb on + strand, within GFF4660 at 18.002 kb on + strand, within GFF4660 at 18.003 kb on - strand, within GFF4660 at 18.003 kb on - strand, within GFF4660 at 18.003 kb on - strand, within GFF4660 at 18.003 kb on - strand, within GFF4660 at 18.003 kb on - strand, within GFF4660 at 18.003 kb on - strand, within GFF4660 at 18.320 kb on + strand, within GFF4660 at 18.320 kb on + strand, within GFF4660 at 18.320 kb on + strand, within GFF4660 at 18.320 kb on + strand, within GFF4660 at 18.321 kb on - strand, within GFF4660 at 18.321 kb on - strand, within GFF4660 at 18.321 kb on - strand, within GFF4660 at 18.321 kb on - strand, within GFF4660 at 18.321 kb on - strand, within GFF4660 at 18.350 kb on + strand, within GFF4660 at 18.350 kb on + strand, within GFF4660 at 18.350 kb on + strand, within GFF4660 at 18.351 kb on - strand, within GFF4660 at 18.351 kb on - strand, within GFF4660 at 18.563 kb on + strand at 18.563 kb on + strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.564 kb on - strand at 18.678 kb on + strand at 18.975 kb on + strand, within GFF4661 at 18.975 kb on + strand, within GFF4661 at 18.975 kb on + strand, within GFF4661 at 18.975 kb on + strand, within GFF4661 at 18.975 kb on + strand, within GFF4661 at 18.976 kb on - strand, within GFF4661 at 18.976 kb on - strand, within GFF4661 at 18.976 kb on - strand, within GFF4661 at 18.976 kb on - strand, within GFF4661 at 18.976 kb on - strand, within GFF4661 at 19.009 kb on + strand, within GFF4661 at 19.009 kb on + strand, within GFF4661 at 19.009 kb on + strand, within GFF4661 at 19.009 kb on + strand, within GFF4661 at 19.009 kb on + strand, within GFF4661 at 19.010 kb on - strand, within GFF4661 at 19.010 kb on - strand, within GFF4661 at 19.010 kb on - strand, within GFF4661 at 19.055 kb on + strand, within GFF4661 at 19.138 kb on + strand, within GFF4661 at 19.138 kb on + strand, within GFF4661 at 19.138 kb on + strand, within GFF4661 at 19.138 kb on + strand, within GFF4661 at 19.139 kb on - strand, within GFF4661 at 19.139 kb on - strand, within GFF4661 at 19.139 kb on - strand, within GFF4661 at 19.139 kb on - strand, within GFF4661 at 19.139 kb on - strand, within GFF4661 at 19.153 kb on + strand, within GFF4661 at 19.153 kb on + strand, within GFF4661 at 19.153 kb on + strand, within GFF4661 at 19.154 kb on - strand, within GFF4661 at 19.154 kb on - strand, within GFF4661 at 19.164 kb on + strand, within GFF4661 at 19.164 kb on + strand, within GFF4661 at 19.164 kb on + strand, within GFF4661 at 19.164 kb on + strand, within GFF4661 at 19.165 kb on - strand, within GFF4661 at 19.165 kb on - strand, within GFF4661 at 19.165 kb on - strand, within GFF4661 at 19.304 kb on + strand, within GFF4661 at 19.305 kb on - strand, within GFF4661 at 19.305 kb on - strand, within GFF4661 at 19.305 kb on - strand, within GFF4661 at 19.325 kb on - strand, within GFF4661 at 19.325 kb on - strand, within GFF4661 at 19.325 kb on - strand, within GFF4661 at 19.470 kb on + strand, within GFF4661 at 19.470 kb on + strand, within GFF4661 at 19.470 kb on + strand, within GFF4661 at 19.470 kb on + strand, within GFF4661 at 19.471 kb on - strand, within GFF4661 at 19.471 kb on - strand, within GFF4661 at 19.471 kb on - strand, within GFF4661 at 19.471 kb on - strand, within GFF4661 at 19.506 kb on + strand, within GFF4661 at 19.506 kb on + strand, within GFF4661 at 19.506 kb on + strand, within GFF4661 at 19.506 kb on + strand, within GFF4661 at 19.633 kb on + strand, within GFF4661 at 19.633 kb on + strand, within GFF4661 at 19.633 kb on + strand, within GFF4661 at 19.633 kb on + strand, within GFF4661 at 19.634 kb on - strand, within GFF4661 at 19.634 kb on - strand, within GFF4661 at 19.634 kb on - strand, within GFF4661 at 19.634 kb on - strand, within GFF4661 at 19.643 kb on + strand, within GFF4661 at 19.643 kb on + strand, within GFF4661 at 19.643 kb on + strand, within GFF4661 at 19.643 kb on + strand, within GFF4661 at 19.643 kb on + strand, within GFF4661 at 19.643 kb on + strand, within GFF4661 at 19.644 kb on - strand, within GFF4661 at 19.644 kb on - strand, within GFF4661 at 19.644 kb on - strand, within GFF4661 at 19.644 kb on - strand, within GFF4661 at 19.644 kb on - strand, within GFF4661 at 19.650 kb on + strand, within GFF4661 at 19.650 kb on + strand, within GFF4661 at 19.650 kb on + strand, within GFF4661 at 19.650 kb on + strand, within GFF4661 at 19.650 kb on + strand, within GFF4661 at 19.650 kb on + strand, within GFF4661 at 19.651 kb on - strand, within GFF4661 at 19.651 kb on - strand, within GFF4661 at 19.651 kb on - strand, within GFF4661 at 19.651 kb on - strand, within GFF4661 at 19.651 kb on - strand, within GFF4661 at 19.651 kb on - strand, within GFF4661 at 19.717 kb on - strand, within GFF4661 at 19.745 kb on - strand at 19.745 kb on - strand at 19.757 kb on + strand at 19.758 kb on - strand at 19.822 kb on + strand at 19.822 kb on + strand at 19.822 kb on + strand at 19.822 kb on + strand at 19.822 kb on + strand at 19.823 kb on - strand at 19.823 kb on - strand at 19.823 kb on - strand at 19.823 kb on - strand at 19.851 kb on + strand at 19.851 kb on + strand at 19.851 kb on + strand at 19.851 kb on + strand at 19.851 kb on + strand at 19.851 kb on + strand at 19.852 kb on - strand at 19.852 kb on - strand at 19.865 kb on - strand at 19.986 kb on + strand at 19.986 kb on + strand at 19.986 kb on + strand at 19.986 kb on + strand at 19.987 kb on - strand at 19.987 kb on - strand at 19.987 kb on - strand at 20.162 kb on + strand at 20.162 kb on + strand at 20.163 kb on - strand at 20.163 kb on - strand at 20.163 kb on - strand at 20.163 kb on - strand at 20.163 kb on - strand at 20.163 kb on - strand at 20.222 kb on + strand at 20.222 kb on + strand at 20.222 kb on + strand at 20.222 kb on + strand at 20.222 kb on + strand at 20.222 kb on + strand at 20.222 kb on + strand at 20.223 kb on - strand at 20.223 kb on - strand at 20.223 kb on - strand at 20.437 kb on - strand at 20.437 kb on - strand at 20.437 kb on - strand at 20.474 kb on + strand at 20.475 kb on - strand at 20.475 kb on - strand at 20.475 kb on - strand at 20.620 kb on - strand, within GFF4662 at 20.620 kb on - strand, within GFF4662 at 20.739 kb on + strand at 20.739 kb on + strand at 20.740 kb on - strand at 20.740 kb on - strand at 20.740 kb on - strand at 20.743 kb on + strand at 20.743 kb on + strand at 20.743 kb on + strand at 20.743 kb on + strand at 20.744 kb on - strand at 20.744 kb on - strand at 20.744 kb on - strand at 20.744 kb on - strand at 20.744 kb on - strand at 20.799 kb on + strand at 20.799 kb on + strand at 20.799 kb on + strand at 20.799 kb on + strand at 20.799 kb on + strand at 20.800 kb on - strand at 20.800 kb on - strand at 20.800 kb on - strand at 20.800 kb on - strand at 20.800 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 17,649 + GFF4659 0.68 -1.3 17,649 + GFF4659 0.68 +0.3 17,649 + GFF4659 0.68 -2.2 17,649 + GFF4659 0.68 +0.3 17,649 + GFF4659 0.68 -1.0 17,650 - GFF4659 0.69 +0.9 17,650 - GFF4659 0.69 -1.8 17,650 - GFF4659 0.69 -0.8 17,650 - GFF4659 0.69 +1.9 17,712 + +0.4 17,713 - -2.8 17,900 + GFF4660 0.23 -4.3 17,900 + GFF4660 0.23 +0.1 17,900 + GFF4660 0.23 -0.9 17,901 - GFF4660 0.23 -0.6 17,901 - GFF4660 0.23 +0.3 17,901 - GFF4660 0.23 +0.2 17,961 + GFF4660 0.30 +0.8 17,961 + GFF4660 0.30 -1.5 17,961 + GFF4660 0.30 -0.3 17,961 + GFF4660 0.30 -2.2 17,961 + GFF4660 0.30 +0.7 17,961 + GFF4660 0.30 +1.7 17,961 + GFF4660 0.30 -1.5 17,961 + GFF4660 0.30 +0.3 17,962 - GFF4660 0.30 -0.6 17,962 - GFF4660 0.30 -2.5 17,962 - GFF4660 0.30 -0.7 17,962 - GFF4660 0.30 -0.7 17,962 - GFF4660 0.30 -0.6 17,962 - GFF4660 0.30 -3.5 17,962 - GFF4660 0.30 -2.6 18,002 + GFF4660 0.34 -2.6 18,002 + GFF4660 0.34 -1.5 18,002 + GFF4660 0.34 -1.7 18,003 - GFF4660 0.34 +2.0 18,003 - GFF4660 0.34 -2.0 18,003 - GFF4660 0.34 -0.3 18,003 - GFF4660 0.34 -0.6 18,003 - GFF4660 0.34 -0.9 18,003 - GFF4660 0.34 -0.7 18,320 + GFF4660 0.69 -1.5 18,320 + GFF4660 0.69 -1.3 18,320 + GFF4660 0.69 -3.1 18,320 + GFF4660 0.69 +0.4 18,321 - GFF4660 0.69 -0.0 18,321 - GFF4660 0.69 +2.9 18,321 - GFF4660 0.69 -0.7 18,321 - GFF4660 0.69 +0.7 18,321 - GFF4660 0.69 -0.9 18,350 + GFF4660 0.72 -2.1 18,350 + GFF4660 0.72 +1.1 18,350 + GFF4660 0.72 -1.6 18,351 - GFF4660 0.72 -0.5 18,351 - GFF4660 0.72 -1.3 18,563 + -2.1 18,563 + -1.6 18,564 - -2.4 18,564 - -0.3 18,564 - -3.8 18,564 - -1.1 18,564 - -2.4 18,564 - +0.5 18,564 - +0.9 18,564 - -1.0 18,564 - +1.5 18,564 - -1.8 18,564 - +2.7 18,678 + +0.4 18,975 + GFF4661 0.31 +1.9 18,975 + GFF4661 0.31 -0.6 18,975 + GFF4661 0.31 +1.6 18,975 + GFF4661 0.31 +0.1 18,975 + GFF4661 0.31 +0.5 18,976 - GFF4661 0.31 +0.7 18,976 - GFF4661 0.31 -2.4 18,976 - GFF4661 0.31 +4.0 18,976 - GFF4661 0.31 -1.9 18,976 - GFF4661 0.31 +0.6 19,009 + GFF4661 0.33 -2.5 19,009 + GFF4661 0.33 -0.3 19,009 + GFF4661 0.33 +1.0 19,009 + GFF4661 0.33 +0.1 19,009 + GFF4661 0.33 -0.3 19,010 - GFF4661 0.33 +0.1 19,010 - GFF4661 0.33 +0.2 19,010 - GFF4661 0.33 -0.9 19,055 + GFF4661 0.37 -1.4 19,138 + GFF4661 0.43 +0.5 19,138 + GFF4661 0.43 -1.3 19,138 + GFF4661 0.43 -0.8 19,138 + GFF4661 0.43 +1.5 19,139 - GFF4661 0.43 -0.9 19,139 - GFF4661 0.43 -0.0 19,139 - GFF4661 0.43 -0.1 19,139 - GFF4661 0.43 +0.9 19,139 - GFF4661 0.43 -0.2 19,153 + GFF4661 0.44 -1.1 19,153 + GFF4661 0.44 -0.9 19,153 + GFF4661 0.44 -1.5 19,154 - GFF4661 0.44 -1.9 19,154 - GFF4661 0.44 -1.7 19,164 + GFF4661 0.45 -1.7 19,164 + GFF4661 0.45 -1.0 19,164 + GFF4661 0.45 -2.7 19,164 + GFF4661 0.45 +0.3 19,165 - GFF4661 0.45 -0.3 19,165 - GFF4661 0.45 -1.7 19,165 - GFF4661 0.45 -0.8 19,304 + GFF4661 0.56 +0.2 19,305 - GFF4661 0.56 -2.9 19,305 - GFF4661 0.56 -0.2 19,305 - GFF4661 0.56 -0.2 19,325 - GFF4661 0.58 -0.5 19,325 - GFF4661 0.58 -0.4 19,325 - GFF4661 0.58 +0.6 19,470 + GFF4661 0.69 +2.5 19,470 + GFF4661 0.69 -1.8 19,470 + GFF4661 0.69 -0.3 19,470 + GFF4661 0.69 +0.9 19,471 - GFF4661 0.69 -0.2 19,471 - GFF4661 0.69 -2.1 19,471 - GFF4661 0.69 +0.6 19,471 - GFF4661 0.69 +3.5 19,506 + GFF4661 0.72 -1.7 19,506 + GFF4661 0.72 +0.3 19,506 + GFF4661 0.72 +1.6 19,506 + GFF4661 0.72 +1.8 19,633 + GFF4661 0.82 +1.6 19,633 + GFF4661 0.82 +0.4 19,633 + GFF4661 0.82 -0.2 19,633 + GFF4661 0.82 +0.2 19,634 - GFF4661 0.82 -4.1 19,634 - GFF4661 0.82 +1.2 19,634 - GFF4661 0.82 -0.8 19,634 - GFF4661 0.82 +0.7 19,643 + GFF4661 0.82 +0.5 19,643 + GFF4661 0.82 +3.1 19,643 + GFF4661 0.82 -2.7 19,643 + GFF4661 0.82 +0.1 19,643 + GFF4661 0.82 -2.4 19,643 + GFF4661 0.82 -2.7 19,644 - GFF4661 0.82 +0.1 19,644 - GFF4661 0.82 -1.3 19,644 - GFF4661 0.82 -1.7 19,644 - GFF4661 0.82 -1.7 19,644 - GFF4661 0.82 +1.4 19,650 + GFF4661 0.83 -0.5 19,650 + GFF4661 0.83 +0.2 19,650 + GFF4661 0.83 +0.9 19,650 + GFF4661 0.83 -0.6 19,650 + GFF4661 0.83 -1.5 19,650 + GFF4661 0.83 +0.3 19,651 - GFF4661 0.83 +0.0 19,651 - GFF4661 0.83 +1.1 19,651 - GFF4661 0.83 -3.5 19,651 - GFF4661 0.83 +0.6 19,651 - GFF4661 0.83 -2.3 19,651 - GFF4661 0.83 -1.0 19,717 - GFF4661 0.88 +1.0 19,745 - -0.9 19,745 - -1.1 19,757 + -1.1 19,758 - -2.5 19,822 + -1.3 19,822 + +0.1 19,822 + -0.6 19,822 + +0.1 19,822 + -0.2 19,823 - -1.7 19,823 - +1.1 19,823 - +3.3 19,823 - +0.0 19,851 + -0.3 19,851 + -1.7 19,851 + -0.7 19,851 + -2.4 19,851 + -1.7 19,851 + -1.6 19,852 - -0.9 19,852 - -0.0 19,865 - -1.7 19,986 + +0.3 19,986 + +1.1 19,986 + +0.3 19,986 + +0.6 19,987 - +1.7 19,987 - +1.0 19,987 - -1.1 20,162 + -0.9 20,162 + -0.4 20,163 - -1.4 20,163 - +2.2 20,163 - -3.4 20,163 - -0.5 20,163 - -3.6 20,163 - -2.5 20,222 + -2.5 20,222 + -1.6 20,222 + +1.5 20,222 + -0.9 20,222 + -3.1 20,222 + -1.3 20,222 + -0.7 20,223 - -0.4 20,223 - -2.6 20,223 - -0.9 20,437 - -2.4 20,437 - -3.7 20,437 - +0.1 20,474 + +0.1 20,475 - -1.9 20,475 - +0.9 20,475 - +0.2 20,620 - GFF4662 0.44 -0.6 20,620 - GFF4662 0.44 -1.1 20,739 + -1.7 20,739 + -0.3 20,740 - +0.1 20,740 - -1.9 20,740 - +0.6 20,743 + -1.7 20,743 + -2.5 20,743 + -1.6 20,743 + -2.1 20,744 - -1.5 20,744 - +1.1 20,744 - +0.5 20,744 - -1.3 20,744 - -0.0 20,799 + -1.2 20,799 + +0.1 20,799 + -0.6 20,799 + -0.0 20,799 + -3.8 20,800 - -1.6 20,800 - -0.5 20,800 - -0.3 20,800 - -0.3 20,800 - +1.2
Or see this region's nucleotide sequence