Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4601 and GFF4602 are separated by 36 nucleotides GFF4602 and GFF4603 are separated by 26 nucleotides GFF4603 and GFF4604 are separated by 2 nucleotides GFF4604 and GFF4605 are separated by 29 nucleotides
GFF4601 - Enoyl-CoA hydratase (EC 4.2.1.17), at 243,362 to 244,126
GFF4601
GFF4602 - 2-hydroxychromene-2-carboxylate isomerase family protein, at 244,163 to 244,759
GFF4602
GFF4603 - Short-chain dehydrogenase, associated with 2-hydroxychromene-2-carboxylate isomerase family protein, at 244,786 to 245,535
GFF4603
GFF4604 - TesB-like acyl-CoA thioesterase 2, at 245,538 to 246,374
GFF4604
GFF4605 - FIG00537210: hypothetical protein, at 246,404 to 247,309
GFF4605
Position (kb) 244
245
246 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 244.035 kb on + strand, within GFF4601 at 244.035 kb on + strand, within GFF4601 at 244.035 kb on + strand, within GFF4601 at 244.035 kb on + strand, within GFF4601 at 244.036 kb on - strand, within GFF4601 at 244.036 kb on - strand, within GFF4601 at 244.141 kb on + strand at 244.141 kb on + strand at 244.142 kb on - strand at 244.142 kb on - strand at 244.419 kb on + strand, within GFF4602 at 244.419 kb on + strand, within GFF4602 at 244.420 kb on - strand, within GFF4602 at 244.434 kb on + strand, within GFF4602 at 244.435 kb on - strand, within GFF4602 at 244.435 kb on - strand, within GFF4602 at 244.435 kb on - strand, within GFF4602 at 244.435 kb on - strand, within GFF4602 at 244.575 kb on + strand, within GFF4602 at 244.575 kb on + strand, within GFF4602 at 244.575 kb on + strand, within GFF4602 at 244.575 kb on + strand, within GFF4602 at 244.575 kb on + strand, within GFF4602 at 244.575 kb on + strand, within GFF4602 at 244.576 kb on - strand, within GFF4602 at 244.576 kb on - strand, within GFF4602 at 244.576 kb on - strand, within GFF4602 at 244.576 kb on - strand, within GFF4602 at 244.576 kb on - strand, within GFF4602 at 244.710 kb on + strand at 244.711 kb on - strand at 244.711 kb on - strand at 244.738 kb on - strand at 244.862 kb on + strand, within GFF4603 at 244.862 kb on + strand, within GFF4603 at 244.862 kb on + strand, within GFF4603 at 244.863 kb on - strand, within GFF4603 at 244.863 kb on - strand, within GFF4603 at 244.863 kb on - strand, within GFF4603 at 244.863 kb on - strand, within GFF4603 at 244.863 kb on - strand, within GFF4603 at 244.863 kb on - strand, within GFF4603 at 244.863 kb on - strand, within GFF4603 at 244.863 kb on - strand, within GFF4603 at 244.863 kb on - strand, within GFF4603 at 244.863 kb on - strand, within GFF4603 at 245.219 kb on + strand, within GFF4603 at 245.219 kb on + strand, within GFF4603 at 245.530 kb on - strand at 245.530 kb on - strand at 245.530 kb on - strand at 245.548 kb on + strand at 245.549 kb on - strand at 245.549 kb on - strand at 245.549 kb on - strand at 245.551 kb on + strand at 245.552 kb on - strand at 245.552 kb on - strand at 245.662 kb on + strand, within GFF4604 at 245.662 kb on + strand, within GFF4604 at 245.662 kb on + strand, within GFF4604 at 245.662 kb on + strand, within GFF4604 at 245.663 kb on - strand, within GFF4604 at 245.663 kb on - strand, within GFF4604 at 245.707 kb on + strand, within GFF4604 at 245.707 kb on + strand, within GFF4604 at 245.707 kb on + strand, within GFF4604 at 245.708 kb on - strand, within GFF4604 at 245.708 kb on - strand, within GFF4604 at 245.708 kb on - strand, within GFF4604 at 245.770 kb on + strand, within GFF4604 at 245.911 kb on + strand, within GFF4604 at 246.172 kb on + strand, within GFF4604 at 246.172 kb on + strand, within GFF4604 at 246.172 kb on + strand, within GFF4604 at 246.281 kb on - strand, within GFF4604
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 244,035 + GFF4601 0.88 +1.0 244,035 + GFF4601 0.88 -1.5 244,035 + GFF4601 0.88 +0.2 244,035 + GFF4601 0.88 -1.0 244,036 - GFF4601 0.88 -0.2 244,036 - GFF4601 0.88 -0.8 244,141 + -2.2 244,141 + -1.3 244,142 - -1.7 244,142 - -1.4 244,419 + GFF4602 0.43 -2.3 244,419 + GFF4602 0.43 +1.6 244,420 - GFF4602 0.43 +1.8 244,434 + GFF4602 0.45 -2.3 244,435 - GFF4602 0.46 +2.6 244,435 - GFF4602 0.46 -2.0 244,435 - GFF4602 0.46 +1.0 244,435 - GFF4602 0.46 +0.1 244,575 + GFF4602 0.69 -1.5 244,575 + GFF4602 0.69 -1.6 244,575 + GFF4602 0.69 +0.2 244,575 + GFF4602 0.69 -0.4 244,575 + GFF4602 0.69 +1.1 244,575 + GFF4602 0.69 -0.8 244,576 - GFF4602 0.69 -0.6 244,576 - GFF4602 0.69 +0.6 244,576 - GFF4602 0.69 -0.8 244,576 - GFF4602 0.69 +0.3 244,576 - GFF4602 0.69 -1.4 244,710 + +2.0 244,711 - +0.9 244,711 - -1.5 244,738 - -0.5 244,862 + GFF4603 0.10 -2.2 244,862 + GFF4603 0.10 -2.7 244,862 + GFF4603 0.10 +0.4 244,863 - GFF4603 0.10 -1.6 244,863 - GFF4603 0.10 -1.0 244,863 - GFF4603 0.10 -1.6 244,863 - GFF4603 0.10 -0.1 244,863 - GFF4603 0.10 -0.6 244,863 - GFF4603 0.10 +0.8 244,863 - GFF4603 0.10 +0.3 244,863 - GFF4603 0.10 -1.2 244,863 - GFF4603 0.10 -3.5 244,863 - GFF4603 0.10 +0.5 245,219 + GFF4603 0.58 +1.5 245,219 + GFF4603 0.58 +0.7 245,530 - +0.0 245,530 - +1.0 245,530 - +0.3 245,548 + -0.4 245,549 - -1.8 245,549 - -0.0 245,549 - +0.8 245,551 + -3.0 245,552 - -1.6 245,552 - +0.3 245,662 + GFF4604 0.15 +0.7 245,662 + GFF4604 0.15 -0.5 245,662 + GFF4604 0.15 -0.2 245,662 + GFF4604 0.15 -1.8 245,663 - GFF4604 0.15 -1.1 245,663 - GFF4604 0.15 -0.2 245,707 + GFF4604 0.20 +1.2 245,707 + GFF4604 0.20 -2.7 245,707 + GFF4604 0.20 -1.2 245,708 - GFF4604 0.20 -2.4 245,708 - GFF4604 0.20 -2.3 245,708 - GFF4604 0.20 +0.3 245,770 + GFF4604 0.28 -3.0 245,911 + GFF4604 0.45 -1.8 246,172 + GFF4604 0.76 -0.2 246,172 + GFF4604 0.76 -0.6 246,172 + GFF4604 0.76 +1.5 246,281 - GFF4604 0.89 -0.1
Or see this region's nucleotide sequence