Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF459 and GFF460 overlap by 4 nucleotides GFF460 and GFF461 are separated by 15 nucleotides GFF461 and GFF462 overlap by 4 nucleotides
GFF459 - Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily / DUF3471 domain, at 497,159 to 498,604
GFF459
GFF460 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 498,601 to 500,139
GFF460
GFF461 - Enoyl-CoA hydratase (EC 4.2.1.17), at 500,155 to 500,955
GFF461
GFF462 - BUG/TctC family periplasmic protein, at 500,952 to 501,938
GFF462
Position (kb) 498
499
500
501 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 497.618 kb on + strand, within GFF459 at 497.618 kb on + strand, within GFF459 at 497.618 kb on + strand, within GFF459 at 497.618 kb on + strand, within GFF459 at 497.618 kb on + strand, within GFF459 at 497.619 kb on - strand, within GFF459 at 497.619 kb on - strand, within GFF459 at 498.041 kb on + strand, within GFF459 at 498.041 kb on + strand, within GFF459 at 498.042 kb on - strand, within GFF459 at 498.161 kb on + strand, within GFF459 at 498.161 kb on + strand, within GFF459 at 498.162 kb on - strand, within GFF459 at 498.320 kb on + strand, within GFF459 at 498.320 kb on - strand, within GFF459 at 498.321 kb on - strand, within GFF459 at 498.321 kb on - strand, within GFF459 at 498.333 kb on - strand, within GFF459 at 498.333 kb on - strand, within GFF459 at 498.333 kb on - strand, within GFF459 at 498.348 kb on - strand, within GFF459 at 498.431 kb on + strand, within GFF459 at 498.431 kb on + strand, within GFF459 at 498.431 kb on + strand, within GFF459 at 498.501 kb on - strand at 498.866 kb on + strand, within GFF460 at 498.867 kb on - strand, within GFF460 at 498.887 kb on + strand, within GFF460 at 498.896 kb on + strand, within GFF460 at 498.896 kb on + strand, within GFF460 at 498.897 kb on - strand, within GFF460 at 498.897 kb on - strand, within GFF460 at 498.897 kb on - strand, within GFF460 at 498.897 kb on - strand, within GFF460 at 498.897 kb on - strand, within GFF460 at 498.944 kb on + strand, within GFF460 at 498.944 kb on + strand, within GFF460 at 498.944 kb on + strand, within GFF460 at 498.944 kb on + strand, within GFF460 at 499.034 kb on + strand, within GFF460 at 499.034 kb on + strand, within GFF460 at 499.035 kb on - strand, within GFF460 at 499.184 kb on + strand, within GFF460 at 499.184 kb on + strand, within GFF460 at 499.184 kb on + strand, within GFF460 at 499.185 kb on - strand, within GFF460 at 499.185 kb on - strand, within GFF460 at 499.185 kb on - strand, within GFF460 at 499.185 kb on - strand, within GFF460 at 499.185 kb on - strand, within GFF460 at 499.364 kb on + strand, within GFF460 at 499.364 kb on + strand, within GFF460 at 499.364 kb on + strand, within GFF460 at 499.364 kb on + strand, within GFF460 at 499.365 kb on - strand, within GFF460 at 499.365 kb on - strand, within GFF460 at 499.365 kb on - strand, within GFF460 at 499.365 kb on - strand, within GFF460 at 499.365 kb on - strand, within GFF460 at 499.553 kb on + strand, within GFF460 at 499.553 kb on + strand, within GFF460 at 499.554 kb on - strand, within GFF460 at 499.554 kb on - strand, within GFF460 at 499.637 kb on + strand, within GFF460 at 499.638 kb on - strand, within GFF460 at 499.806 kb on + strand, within GFF460 at 499.806 kb on + strand, within GFF460 at 499.806 kb on + strand, within GFF460 at 499.807 kb on - strand, within GFF460 at 499.807 kb on - strand, within GFF460 at 499.841 kb on + strand, within GFF460 at 499.845 kb on - strand, within GFF460 at 499.892 kb on + strand, within GFF460 at 499.916 kb on + strand, within GFF460 at 499.916 kb on + strand, within GFF460 at 499.916 kb on + strand, within GFF460 at 499.917 kb on - strand, within GFF460 at 499.917 kb on - strand, within GFF460 at 500.039 kb on + strand at 500.040 kb on - strand at 500.148 kb on + strand at 500.148 kb on + strand at 500.148 kb on + strand at 500.149 kb on - strand at 500.149 kb on - strand at 500.151 kb on + strand at 500.151 kb on + strand at 500.151 kb on + strand at 500.151 kb on + strand at 500.151 kb on + strand at 500.151 kb on + strand at 500.152 kb on - strand at 500.152 kb on - strand at 500.152 kb on - strand at 500.152 kb on - strand at 500.152 kb on - strand at 500.222 kb on + strand at 500.222 kb on + strand at 500.222 kb on + strand at 500.222 kb on + strand at 500.223 kb on - strand at 500.223 kb on - strand at 500.223 kb on - strand at 500.223 kb on - strand at 500.223 kb on - strand at 500.223 kb on - strand at 500.228 kb on + strand at 500.228 kb on + strand at 500.229 kb on - strand at 500.402 kb on + strand, within GFF461 at 500.402 kb on + strand, within GFF461 at 500.523 kb on + strand, within GFF461 at 500.524 kb on - strand, within GFF461
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 497,618 + GFF459 0.32 +1.4 497,618 + GFF459 0.32 +0.8 497,618 + GFF459 0.32 +1.5 497,618 + GFF459 0.32 -1.2 497,618 + GFF459 0.32 -1.1 497,619 - GFF459 0.32 -2.5 497,619 - GFF459 0.32 +0.9 498,041 + GFF459 0.61 +0.6 498,041 + GFF459 0.61 +2.0 498,042 - GFF459 0.61 +0.2 498,161 + GFF459 0.69 +0.4 498,161 + GFF459 0.69 +0.5 498,162 - GFF459 0.69 +0.6 498,320 + GFF459 0.80 +0.1 498,320 - GFF459 0.80 -0.2 498,321 - GFF459 0.80 +1.0 498,321 - GFF459 0.80 +1.9 498,333 - GFF459 0.81 -1.0 498,333 - GFF459 0.81 -1.7 498,333 - GFF459 0.81 -1.8 498,348 - GFF459 0.82 -0.7 498,431 + GFF459 0.88 -1.6 498,431 + GFF459 0.88 -1.0 498,431 + GFF459 0.88 +0.3 498,501 - -1.6 498,866 + GFF460 0.17 -2.0 498,867 - GFF460 0.17 -2.5 498,887 + GFF460 0.19 -0.1 498,896 + GFF460 0.19 -3.7 498,896 + GFF460 0.19 -1.5 498,897 - GFF460 0.19 -1.3 498,897 - GFF460 0.19 -2.9 498,897 - GFF460 0.19 -1.1 498,897 - GFF460 0.19 -3.3 498,897 - GFF460 0.19 -1.2 498,944 + GFF460 0.22 -0.9 498,944 + GFF460 0.22 -2.2 498,944 + GFF460 0.22 -0.4 498,944 + GFF460 0.22 +0.3 499,034 + GFF460 0.28 -1.0 499,034 + GFF460 0.28 +0.6 499,035 - GFF460 0.28 -2.7 499,184 + GFF460 0.38 -2.4 499,184 + GFF460 0.38 +0.5 499,184 + GFF460 0.38 -0.1 499,185 - GFF460 0.38 -0.8 499,185 - GFF460 0.38 -0.6 499,185 - GFF460 0.38 -4.9 499,185 - GFF460 0.38 +0.4 499,185 - GFF460 0.38 -1.4 499,364 + GFF460 0.50 -0.1 499,364 + GFF460 0.50 -1.1 499,364 + GFF460 0.50 +1.6 499,364 + GFF460 0.50 -1.0 499,365 - GFF460 0.50 -1.2 499,365 - GFF460 0.50 +0.0 499,365 - GFF460 0.50 +0.3 499,365 - GFF460 0.50 -1.1 499,365 - GFF460 0.50 -0.8 499,553 + GFF460 0.62 +0.3 499,553 + GFF460 0.62 +0.5 499,554 - GFF460 0.62 +0.7 499,554 - GFF460 0.62 -1.0 499,637 + GFF460 0.67 -1.2 499,638 - GFF460 0.67 -0.0 499,806 + GFF460 0.78 +1.1 499,806 + GFF460 0.78 +1.4 499,806 + GFF460 0.78 +2.1 499,807 - GFF460 0.78 -4.0 499,807 - GFF460 0.78 -1.4 499,841 + GFF460 0.81 -0.3 499,845 - GFF460 0.81 +0.1 499,892 + GFF460 0.84 +0.3 499,916 + GFF460 0.85 -0.2 499,916 + GFF460 0.85 -2.2 499,916 + GFF460 0.85 +1.6 499,917 - GFF460 0.86 +0.0 499,917 - GFF460 0.86 -0.3 500,039 + +0.8 500,040 - -0.4 500,148 + -1.1 500,148 + +0.8 500,148 + -2.3 500,149 - -1.4 500,149 - -1.9 500,151 + +2.0 500,151 + -0.9 500,151 + +0.0 500,151 + -0.4 500,151 + -1.0 500,151 + -1.4 500,152 - -1.2 500,152 - -0.1 500,152 - -1.0 500,152 - -0.5 500,152 - +0.0 500,222 + +0.0 500,222 + +0.4 500,222 + +0.4 500,222 + -0.1 500,223 - -1.5 500,223 - -0.1 500,223 - +0.7 500,223 - -1.0 500,223 - +0.4 500,223 - -0.7 500,228 + +0.7 500,228 + -0.8 500,229 - +3.8 500,402 + GFF461 0.31 -0.2 500,402 + GFF461 0.31 -0.6 500,523 + GFF461 0.46 +1.8 500,524 - GFF461 0.46 +0.1
Or see this region's nucleotide sequence