Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4573 and GFF4574 are separated by 40 nucleotides GFF4574 and GFF4575 are separated by 55 nucleotides
GFF4573 - L-carnitine dehydratase/bile acid-inducible protein F, at 211,136 to 212,344
GFF4573
GFF4574 - BUG/TctC family periplasmic protein, at 212,385 to 213,377
GFF4574
GFF4575 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 213,433 to 215,385
GFF4575
Position (kb) 212
213
214 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 211.475 kb on + strand, within GFF4573 at 211.511 kb on + strand, within GFF4573 at 211.511 kb on + strand, within GFF4573 at 211.511 kb on + strand, within GFF4573 at 211.511 kb on + strand, within GFF4573 at 211.511 kb on + strand, within GFF4573 at 211.511 kb on + strand, within GFF4573 at 211.512 kb on - strand, within GFF4573 at 211.512 kb on - strand, within GFF4573 at 211.566 kb on - strand, within GFF4573 at 211.673 kb on + strand, within GFF4573 at 211.674 kb on - strand, within GFF4573 at 211.674 kb on - strand, within GFF4573 at 211.674 kb on - strand, within GFF4573 at 211.674 kb on - strand, within GFF4573 at 211.674 kb on - strand, within GFF4573 at 211.703 kb on + strand, within GFF4573 at 211.778 kb on + strand, within GFF4573 at 211.779 kb on - strand, within GFF4573 at 211.779 kb on - strand, within GFF4573 at 211.781 kb on + strand, within GFF4573 at 211.781 kb on + strand, within GFF4573 at 211.781 kb on + strand, within GFF4573 at 211.782 kb on - strand, within GFF4573 at 212.661 kb on + strand, within GFF4574 at 212.763 kb on + strand, within GFF4574 at 212.763 kb on + strand, within GFF4574 at 212.764 kb on - strand, within GFF4574 at 212.764 kb on - strand, within GFF4574 at 212.764 kb on - strand, within GFF4574 at 212.764 kb on - strand, within GFF4574 at 212.869 kb on - strand, within GFF4574 at 212.869 kb on - strand, within GFF4574 at 212.869 kb on - strand, within GFF4574 at 212.869 kb on - strand, within GFF4574 at 212.869 kb on - strand, within GFF4574 at 213.268 kb on + strand, within GFF4574 at 213.269 kb on - strand, within GFF4574 at 213.375 kb on + strand at 213.457 kb on + strand at 213.457 kb on + strand at 213.457 kb on + strand at 213.457 kb on + strand at 213.457 kb on + strand at 213.458 kb on - strand at 213.458 kb on - strand at 213.458 kb on - strand at 213.458 kb on - strand at 213.458 kb on - strand at 213.458 kb on - strand at 213.458 kb on - strand at 213.458 kb on - strand at 213.458 kb on - strand at 213.571 kb on + strand at 213.571 kb on + strand at 213.571 kb on + strand at 213.572 kb on - strand at 213.670 kb on + strand, within GFF4575 at 213.670 kb on + strand, within GFF4575 at 213.670 kb on + strand, within GFF4575 at 213.775 kb on + strand, within GFF4575 at 213.776 kb on - strand, within GFF4575 at 214.118 kb on - strand, within GFF4575 at 214.363 kb on + strand, within GFF4575 at 214.364 kb on - strand, within GFF4575 at 214.364 kb on - strand, within GFF4575
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 211,475 + GFF4573 0.28 -1.5 211,511 + GFF4573 0.31 -1.4 211,511 + GFF4573 0.31 -1.2 211,511 + GFF4573 0.31 -1.7 211,511 + GFF4573 0.31 -1.7 211,511 + GFF4573 0.31 -0.5 211,511 + GFF4573 0.31 +2.7 211,512 - GFF4573 0.31 -1.2 211,512 - GFF4573 0.31 +1.4 211,566 - GFF4573 0.36 -1.3 211,673 + GFF4573 0.44 -0.1 211,674 - GFF4573 0.44 -2.6 211,674 - GFF4573 0.44 -3.0 211,674 - GFF4573 0.44 -2.7 211,674 - GFF4573 0.44 -0.2 211,674 - GFF4573 0.44 +0.2 211,703 + GFF4573 0.47 +0.9 211,778 + GFF4573 0.53 -0.6 211,779 - GFF4573 0.53 -1.5 211,779 - GFF4573 0.53 +1.1 211,781 + GFF4573 0.53 -1.8 211,781 + GFF4573 0.53 +1.4 211,781 + GFF4573 0.53 -1.0 211,782 - GFF4573 0.53 +1.7 212,661 + GFF4574 0.28 +1.1 212,763 + GFF4574 0.38 -1.2 212,763 + GFF4574 0.38 -1.8 212,764 - GFF4574 0.38 -2.2 212,764 - GFF4574 0.38 +0.2 212,764 - GFF4574 0.38 +0.4 212,764 - GFF4574 0.38 +3.0 212,869 - GFF4574 0.49 -0.6 212,869 - GFF4574 0.49 +1.1 212,869 - GFF4574 0.49 +1.3 212,869 - GFF4574 0.49 -0.6 212,869 - GFF4574 0.49 -0.6 213,268 + GFF4574 0.89 +0.4 213,269 - GFF4574 0.89 -1.4 213,375 + -0.1 213,457 + +0.2 213,457 + +0.4 213,457 + +1.0 213,457 + -0.4 213,457 + -1.9 213,458 - +0.3 213,458 - -1.4 213,458 - -2.0 213,458 - -1.1 213,458 - +0.8 213,458 - -2.2 213,458 - +1.4 213,458 - +1.1 213,458 - -0.0 213,571 + -1.2 213,571 + -0.8 213,571 + +1.2 213,572 - -3.0 213,670 + GFF4575 0.12 +1.5 213,670 + GFF4575 0.12 +0.4 213,670 + GFF4575 0.12 +0.8 213,775 + GFF4575 0.18 +1.2 213,776 - GFF4575 0.18 +1.6 214,118 - GFF4575 0.35 +0.2 214,363 + GFF4575 0.48 +0.4 214,364 - GFF4575 0.48 -2.0 214,364 - GFF4575 0.48 -0.3
Or see this region's nucleotide sequence