Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4571 and GFF4572 overlap by 4 nucleotides GFF4572 and GFF4573 are separated by 61 nucleotides GFF4573 and GFF4574 are separated by 40 nucleotides
GFF4571 - Acyl-CoA dehydrogenase family protein, at 209,108 to 210,250
GFF4571
GFF4572 - Enoyl-CoA hydratase (EC 4.2.1.17), at 210,247 to 211,074
GFF4572
GFF4573 - L-carnitine dehydratase/bile acid-inducible protein F, at 211,136 to 212,344
GFF4573
GFF4574 - BUG/TctC family periplasmic protein, at 212,385 to 213,377
GFF4574
Position (kb) 211
212
213 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 210.155 kb on + strand at 210.155 kb on + strand at 210.218 kb on + strand at 210.218 kb on + strand at 210.218 kb on + strand at 210.219 kb on - strand at 210.219 kb on - strand at 210.219 kb on - strand at 210.219 kb on - strand at 210.352 kb on + strand, within GFF4572 at 210.352 kb on + strand, within GFF4572 at 210.353 kb on - strand, within GFF4572 at 210.649 kb on + strand, within GFF4572 at 210.649 kb on + strand, within GFF4572 at 210.650 kb on - strand, within GFF4572 at 210.650 kb on - strand, within GFF4572 at 210.650 kb on - strand, within GFF4572 at 210.650 kb on - strand, within GFF4572 at 210.661 kb on + strand, within GFF4572 at 210.662 kb on - strand, within GFF4572 at 210.662 kb on - strand, within GFF4572 at 210.662 kb on - strand, within GFF4572 at 210.662 kb on - strand, within GFF4572 at 211.326 kb on - strand, within GFF4573 at 211.326 kb on - strand, within GFF4573 at 211.475 kb on + strand, within GFF4573 at 211.511 kb on + strand, within GFF4573 at 211.511 kb on + strand, within GFF4573 at 211.511 kb on + strand, within GFF4573 at 211.511 kb on + strand, within GFF4573 at 211.511 kb on + strand, within GFF4573 at 211.511 kb on + strand, within GFF4573 at 211.512 kb on - strand, within GFF4573 at 211.512 kb on - strand, within GFF4573 at 211.566 kb on - strand, within GFF4573 at 211.673 kb on + strand, within GFF4573 at 211.674 kb on - strand, within GFF4573 at 211.674 kb on - strand, within GFF4573 at 211.674 kb on - strand, within GFF4573 at 211.674 kb on - strand, within GFF4573 at 211.674 kb on - strand, within GFF4573 at 211.703 kb on + strand, within GFF4573 at 211.778 kb on + strand, within GFF4573 at 211.779 kb on - strand, within GFF4573 at 211.779 kb on - strand, within GFF4573 at 211.781 kb on + strand, within GFF4573 at 211.781 kb on + strand, within GFF4573 at 211.781 kb on + strand, within GFF4573 at 211.782 kb on - strand, within GFF4573 at 212.661 kb on + strand, within GFF4574 at 212.763 kb on + strand, within GFF4574 at 212.763 kb on + strand, within GFF4574 at 212.764 kb on - strand, within GFF4574 at 212.764 kb on - strand, within GFF4574 at 212.764 kb on - strand, within GFF4574 at 212.764 kb on - strand, within GFF4574 at 212.869 kb on - strand, within GFF4574 at 212.869 kb on - strand, within GFF4574 at 212.869 kb on - strand, within GFF4574 at 212.869 kb on - strand, within GFF4574 at 212.869 kb on - strand, within GFF4574 at 213.268 kb on + strand, within GFF4574 at 213.269 kb on - strand, within GFF4574
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 210,155 + +1.0 210,155 + -1.6 210,218 + -0.4 210,218 + -3.1 210,218 + +0.0 210,219 - -0.9 210,219 - +0.2 210,219 - +1.5 210,219 - +1.9 210,352 + GFF4572 0.13 -0.1 210,352 + GFF4572 0.13 +0.6 210,353 - GFF4572 0.13 +1.2 210,649 + GFF4572 0.49 -1.6 210,649 + GFF4572 0.49 -1.9 210,650 - GFF4572 0.49 -2.7 210,650 - GFF4572 0.49 +0.8 210,650 - GFF4572 0.49 +1.2 210,650 - GFF4572 0.49 +0.6 210,661 + GFF4572 0.50 -2.1 210,662 - GFF4572 0.50 +0.4 210,662 - GFF4572 0.50 +2.2 210,662 - GFF4572 0.50 +0.5 210,662 - GFF4572 0.50 +0.6 211,326 - GFF4573 0.16 -1.3 211,326 - GFF4573 0.16 -0.9 211,475 + GFF4573 0.28 -1.5 211,511 + GFF4573 0.31 -1.4 211,511 + GFF4573 0.31 -1.2 211,511 + GFF4573 0.31 -1.7 211,511 + GFF4573 0.31 -1.7 211,511 + GFF4573 0.31 -0.5 211,511 + GFF4573 0.31 +2.7 211,512 - GFF4573 0.31 -1.2 211,512 - GFF4573 0.31 +1.4 211,566 - GFF4573 0.36 -1.3 211,673 + GFF4573 0.44 -0.1 211,674 - GFF4573 0.44 -2.6 211,674 - GFF4573 0.44 -3.0 211,674 - GFF4573 0.44 -2.7 211,674 - GFF4573 0.44 -0.2 211,674 - GFF4573 0.44 +0.2 211,703 + GFF4573 0.47 +0.9 211,778 + GFF4573 0.53 -0.6 211,779 - GFF4573 0.53 -1.5 211,779 - GFF4573 0.53 +1.1 211,781 + GFF4573 0.53 -1.8 211,781 + GFF4573 0.53 +1.4 211,781 + GFF4573 0.53 -1.0 211,782 - GFF4573 0.53 +1.7 212,661 + GFF4574 0.28 +1.1 212,763 + GFF4574 0.38 -1.2 212,763 + GFF4574 0.38 -1.8 212,764 - GFF4574 0.38 -2.2 212,764 - GFF4574 0.38 +0.2 212,764 - GFF4574 0.38 +0.4 212,764 - GFF4574 0.38 +3.0 212,869 - GFF4574 0.49 -0.6 212,869 - GFF4574 0.49 +1.1 212,869 - GFF4574 0.49 +1.3 212,869 - GFF4574 0.49 -0.6 212,869 - GFF4574 0.49 -0.6 213,268 + GFF4574 0.89 +0.4 213,269 - GFF4574 0.89 -1.4
Or see this region's nucleotide sequence