Strain Fitness in Variovorax sp. SCN45 around GFF4558

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4557 and GFF4558 overlap by 4 nucleotidesGFF4558 and GFF4559 are separated by 3 nucleotidesGFF4559 and GFF4560 are separated by 97 nucleotides GFF4557 - Dihydroorotase (EC 3.5.2.3), at 193,623 to 194,654 GFF4557 GFF4558 - RNA polymerase ECF-type sigma factor, at 194,651 to 195,193 GFF4558 GFF4559 - Uncharacterized membrane protein Rmet_3714, at 195,197 to 195,406 GFF4559 GFF4560 - hypothetical protein, at 195,504 to 196,235 GFF4560 Position (kb) 194 195 196Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 193.756 kb on + strand, within GFF4557at 193.756 kb on + strand, within GFF4557at 193.756 kb on + strand, within GFF4557at 193.756 kb on + strand, within GFF4557at 193.757 kb on - strand, within GFF4557at 193.757 kb on - strand, within GFF4557at 193.858 kb on + strand, within GFF4557at 194.005 kb on + strand, within GFF4557at 194.005 kb on + strand, within GFF4557at 194.005 kb on + strand, within GFF4557at 194.006 kb on - strand, within GFF4557at 194.006 kb on - strand, within GFF4557at 194.006 kb on - strand, within GFF4557at 194.006 kb on - strand, within GFF4557at 194.008 kb on + strand, within GFF4557at 194.008 kb on + strand, within GFF4557at 194.009 kb on - strand, within GFF4557at 194.009 kb on - strand, within GFF4557at 194.009 kb on - strand, within GFF4557at 194.009 kb on - strand, within GFF4557at 194.050 kb on + strand, within GFF4557at 194.050 kb on + strand, within GFF4557at 194.050 kb on + strand, within GFF4557at 194.050 kb on + strand, within GFF4557at 194.051 kb on - strand, within GFF4557at 194.051 kb on - strand, within GFF4557at 194.051 kb on - strand, within GFF4557at 194.107 kb on + strand, within GFF4557at 194.107 kb on + strand, within GFF4557at 194.107 kb on + strand, within GFF4557at 194.108 kb on - strand, within GFF4557at 194.296 kb on + strand, within GFF4557at 194.296 kb on + strand, within GFF4557at 194.296 kb on + strand, within GFF4557at 194.296 kb on + strand, within GFF4557at 194.296 kb on + strand, within GFF4557at 194.297 kb on - strand, within GFF4557at 194.297 kb on - strand, within GFF4557at 194.297 kb on - strand, within GFF4557at 194.297 kb on - strand, within GFF4557at 194.297 kb on - strand, within GFF4557at 194.297 kb on - strand, within GFF4557at 194.297 kb on - strand, within GFF4557at 194.297 kb on - strand, within GFF4557at 194.353 kb on + strand, within GFF4557at 194.688 kb on + strandat 194.689 kb on - strandat 194.814 kb on + strand, within GFF4558at 194.814 kb on + strand, within GFF4558at 194.815 kb on - strand, within GFF4558at 194.815 kb on - strand, within GFF4558at 194.815 kb on - strand, within GFF4558at 194.815 kb on - strand, within GFF4558at 194.815 kb on - strand, within GFF4558at 195.030 kb on + strand, within GFF4558at 195.088 kb on - strand, within GFF4558at 195.399 kb on + strandat 195.399 kb on + strandat 195.399 kb on + strandat 195.399 kb on + strandat 195.399 kb on + strandat 195.399 kb on + strandat 195.399 kb on + strandat 195.399 kb on + strandat 195.399 kb on + strandat 195.399 kb on + strandat 195.399 kb on + strandat 195.399 kb on + strandat 195.399 kb on + strandat 195.399 kb on + strandat 195.399 kb on + strandat 195.400 kb on - strandat 195.400 kb on - strandat 195.400 kb on - strandat 195.400 kb on - strandat 195.505 kb on + strandat 195.505 kb on + strandat 195.505 kb on + strandat 195.505 kb on + strandat 195.505 kb on + strandat 195.506 kb on - strandat 195.506 kb on - strandat 195.506 kb on - strandat 195.506 kb on - strandat 195.506 kb on - strandat 195.506 kb on - strandat 195.701 kb on - strand, within GFF4560at 196.130 kb on - strand, within GFF4560

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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193,756 + GFF4557 0.13 -1.2
193,756 + GFF4557 0.13 -0.4
193,756 + GFF4557 0.13 -0.6
193,756 + GFF4557 0.13 +1.2
193,757 - GFF4557 0.13 -2.2
193,757 - GFF4557 0.13 -2.2
193,858 + GFF4557 0.23 -0.8
194,005 + GFF4557 0.37 -1.4
194,005 + GFF4557 0.37 -0.6
194,005 + GFF4557 0.37 -2.7
194,006 - GFF4557 0.37 -1.3
194,006 - GFF4557 0.37 -2.2
194,006 - GFF4557 0.37 -1.0
194,006 - GFF4557 0.37 -1.2
194,008 + GFF4557 0.37 -2.4
194,008 + GFF4557 0.37 -2.2
194,009 - GFF4557 0.37 -0.4
194,009 - GFF4557 0.37 -1.6
194,009 - GFF4557 0.37 -2.2
194,009 - GFF4557 0.37 -1.5
194,050 + GFF4557 0.41 -1.0
194,050 + GFF4557 0.41 -1.4
194,050 + GFF4557 0.41 -1.4
194,050 + GFF4557 0.41 -1.5
194,051 - GFF4557 0.41 -1.8
194,051 - GFF4557 0.41 -1.6
194,051 - GFF4557 0.41 -4.6
194,107 + GFF4557 0.47 -2.3
194,107 + GFF4557 0.47 -2.4
194,107 + GFF4557 0.47 -2.0
194,108 - GFF4557 0.47 -1.7
194,296 + GFF4557 0.65 -1.5
194,296 + GFF4557 0.65 -0.6
194,296 + GFF4557 0.65 -2.8
194,296 + GFF4557 0.65 -2.6
194,296 + GFF4557 0.65 +0.9
194,297 - GFF4557 0.65 -1.8
194,297 - GFF4557 0.65 -1.6
194,297 - GFF4557 0.65 -2.2
194,297 - GFF4557 0.65 -2.5
194,297 - GFF4557 0.65 -2.5
194,297 - GFF4557 0.65 -2.0
194,297 - GFF4557 0.65 -1.2
194,297 - GFF4557 0.65 -1.6
194,353 + GFF4557 0.71 -3.2
194,688 + +0.4
194,689 - -0.4
194,814 + GFF4558 0.30 +0.6
194,814 + GFF4558 0.30 -1.3
194,815 - GFF4558 0.30 -0.4
194,815 - GFF4558 0.30 -3.8
194,815 - GFF4558 0.30 -0.6
194,815 - GFF4558 0.30 -1.5
194,815 - GFF4558 0.30 -4.6
195,030 + GFF4558 0.70 -2.3
195,088 - GFF4558 0.80 -0.0
195,399 + -1.5
195,399 + +0.2
195,399 + +2.5
195,399 + -1.8
195,399 + +2.2
195,399 + +0.6
195,399 + -0.2
195,399 + +1.2
195,399 + +0.5
195,399 + -0.8
195,399 + -0.1
195,399 + +0.7
195,399 + +0.6
195,399 + +0.8
195,399 + -0.3
195,400 - -0.5
195,400 - +1.5
195,400 - -2.0
195,400 - +0.0
195,505 + +1.6
195,505 + +0.6
195,505 + -0.4
195,505 + -1.0
195,505 + -2.8
195,506 - -0.6
195,506 - -2.0
195,506 - -3.6
195,506 - -1.0
195,506 - -0.8
195,506 - +0.9
195,701 - GFF4560 0.27 -0.4
196,130 - GFF4560 0.86 -1.1

Or see this region's nucleotide sequence