Strain Fitness in Variovorax sp. SCN45 around GFF4483

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
125,800	-		GFF4482	0.16	-2.2
125,800	-		GFF4482	0.16	-0.6
125,800	-		GFF4482	0.16	-2.9
125,800	-		GFF4482	0.16	-2.8
125,800	-		GFF4482	0.16	-2.3
125,800	-		GFF4482	0.16	-1.7
126,253	-				+0.8
126,253	-				+2.8
126,253	-				-0.4
126,253	-				-0.2
126,253	-				+0.2
126,253	-				+0.6
126,290	+				+2.2
126,291	-				-0.9
126,299	+				-2.5
126,367	-				+2.2
126,367	-				+2.2
126,367	-				+2.9
126,371	-				+0.2
126,371	-				-0.2
126,471	+				-2.4
126,471	+				+1.8
126,471	+				-2.0
126,471	+				-0.4
126,471	+				-1.5
126,471	+				-1.5
126,472	-				+0.1
126,472	-				-0.5
126,472	-				-1.3
126,472	-				-0.6
126,472	-				-0.5
126,472	-				+1.2
126,472	-				-0.4
126,472	-				+1.2
126,472	-				-4.0
126,496	+				+0.7
126,496	+				+0.0
126,496	+				-0.6
126,496	+				-1.9
126,497	-				+1.6
126,497	-				-0.0
126,497	-				+1.5
126,549	+				-0.2
126,549	+				-1.2
126,549	+				-0.4
126,549	+				-1.5
126,549	+				-0.2
126,549	+				-0.2
126,549	+				+2.2
126,549	+				+2.8
126,549	+				-0.2
126,549	+				-2.4
126,549	+				-0.8
126,549	+				-0.8
126,549	+				+2.6
126,549	+				+0.8
126,549	+				-0.9
126,549	+				-1.0
126,549	+				-0.8
126,549	+				-0.2
126,549	+				+2.2
126,549	+				-0.8
126,549	+				+1.2
126,549	+				-0.0
126,550	-				-1.7
126,550	-				+0.4
126,550	-				-0.6
126,550	-				-1.6
126,550	-				+1.6
126,550	-				-0.7
126,550	-				-1.7
126,550	-				-1.9
126,550	-				-1.9
126,550	-				+1.1
126,550	-				-1.1
126,703	+		GFF4483	0.20	-1.2
126,703	+		GFF4483	0.20	-2.6
126,703	+		GFF4483	0.20	-2.8
126,703	+		GFF4483	0.20	-0.2
126,703	+		GFF4483	0.20	-0.6
126,703	+		GFF4483	0.20	-0.6
126,703	+		GFF4483	0.20	+2.4
126,704	-		GFF4483	0.20	+0.1
126,704	-		GFF4483	0.20	+1.8
126,704	-		GFF4483	0.20	+1.1
126,704	-		GFF4483	0.20	+1.3
126,704	-		GFF4483	0.20	-2.5
126,704	-		GFF4483	0.20	+0.5
126,886	+		GFF4483	0.34	+1.7
126,886	+		GFF4483	0.34	-0.4
126,886	+		GFF4483	0.34	-1.5
126,887	-		GFF4483	0.34	+1.4
126,887	-		GFF4483	0.34	-1.5
126,887	-		GFF4483	0.34	-0.7
126,887	-		GFF4483	0.34	+0.6
126,887	-		GFF4483	0.34	-2.4
126,887	-		GFF4483	0.34	+0.4
127,495	+		GFF4483	0.80	-1.5
127,495	+		GFF4483	0.80	-3.7
127,495	+		GFF4483	0.80	-3.5
127,496	-		GFF4483	0.80	+1.4
127,496	-		GFF4483	0.80	-1.2
127,496	-		GFF4483	0.80	-1.3
127,496	-		GFF4483	0.80	-2.7
127,496	-		GFF4483	0.80	+0.7
127,496	-		GFF4483	0.80	+2.2
127,496	-		GFF4483	0.80	-1.0
127,800	+				+0.5
127,800	+				-1.3
127,800	+				+2.0
127,899	+		GFF4484	0.24	-3.9
127,899	+		GFF4484	0.24	+1.4
127,900	-		GFF4484	0.24	-1.6
127,900	-		GFF4484	0.24	-0.4
127,900	-		GFF4484	0.24	-0.4
128,169	+		GFF4484	0.73	-0.6
128,169	+		GFF4484	0.73	+0.1
128,170	-		GFF4484	0.73	+1.7
128,170	-		GFF4484	0.73	-3.0
128,170	-		GFF4484	0.73	+1.2
128,209	+		GFF4484	0.80	-0.2
128,209	+		GFF4484	0.80	+0.8
128,209	+		GFF4484	0.80	-0.4
128,209	+		GFF4484	0.80	+0.7
128,209	+		GFF4484	0.80	+1.0
128,210	-		GFF4484	0.80	-1.2
128,210	-		GFF4484	0.80	-0.6
128,210	-		GFF4484	0.80	-0.2
128,210	-		GFF4484	0.80	-0.2
128,210	-		GFF4484	0.80	+0.2
128,371	+				-2.1
128,371	+				-2.4
128,371	+				-0.6
128,371	+				-1.2
128,372	-				-0.4
128,372	-				-1.4
128,408	+				-1.7
128,408	+				+1.5
128,408	+				+0.8
128,408	+				+1.2
128,409	-				+1.1
128,409	-				+0.8
128,412	+				+1.7
128,412	+				+1.2
128,412	+				+1.4
128,412	+				+1.8
128,412	+				+2.6
128,412	+				+2.8
128,413	-				+1.1
128,413	-				+1.9