Strain Fitness in Variovorax sp. SCN45 around GFF4453

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
92,925	-		GFF4452	0.19	-1.0
92,925	-		GFF4452	0.19	-0.1
92,925	-		GFF4452	0.19	+3.0
92,925	-		GFF4452	0.19	-0.6
93,074	+		GFF4452	0.39	-0.2
93,075	-		GFF4452	0.39	+2.1
93,075	-		GFF4452	0.39	+0.1
93,182	+		GFF4452	0.53	+0.5
93,182	+		GFF4452	0.53	-1.2
93,182	+		GFF4452	0.53	-0.3
93,183	-		GFF4452	0.53	-2.0
93,183	-		GFF4452	0.53	+1.2
93,183	-		GFF4452	0.53	-0.8
93,183	-		GFF4452	0.53	+0.8
93,183	-		GFF4452	0.53	-1.8
93,519	+				-1.8
93,520	-				-2.6
93,537	+				-1.2
93,538	-				-0.5
93,538	-				-0.2
93,538	-				-0.4
93,538	-				-0.5
93,538	-				-1.2
93,538	-				-0.2
93,573	-				-1.7
93,634	+				+0.6
93,686	+				+1.2
93,697	+				-0.7
93,697	+				+0.6
93,697	+				+0.6
93,697	+				-2.6
93,697	+				+0.4
93,698	-				-1.1
93,698	-				+0.8
93,698	-				-2.5
93,698	-				-1.9
93,732	+				+1.1
93,732	+				-3.0
93,732	+				-0.4
93,732	+				-2.2
93,733	-				+1.7
93,733	-				-0.2
93,733	-				-0.6
93,733	-				-3.0
93,733	-				+2.9
93,733	-				+0.3
93,737	+				-0.4
93,737	+				+0.9
93,738	-				+3.1
93,738	-				-0.1
93,849	+				+0.7
93,849	+				-0.4
93,850	-				+0.4
93,850	-				+0.6
93,933	+				+1.4
93,933	+				-0.4
93,933	+				+0.6
93,933	+				+0.9
93,934	-				-0.2
93,972	+		GFF4453	0.14	+1.0
93,972	+		GFF4453	0.14	-1.0
93,972	+		GFF4453	0.14	+2.2
93,972	+		GFF4453	0.14	-0.5
93,972	+		GFF4453	0.14	-1.3
93,972	+		GFF4453	0.14	-3.7
93,973	-		GFF4453	0.14	-2.4
93,973	-		GFF4453	0.14	-1.4
93,973	-		GFF4453	0.14	-0.5
93,973	-		GFF4453	0.14	+1.6
93,973	-		GFF4453	0.14	-2.0
93,973	-		GFF4453	0.14	-0.4
93,973	-		GFF4453	0.14	+1.8
94,176	+		GFF4453	0.45	-0.4
94,176	+		GFF4453	0.45	-1.4
94,176	+		GFF4453	0.45	+2.4
94,176	+		GFF4453	0.45	-1.8
94,176	+		GFF4453	0.45	-1.7
94,176	+		GFF4453	0.45	-3.0
94,176	+		GFF4453	0.45	-2.1
94,176	+		GFF4453	0.45	-0.8
94,177	-		GFF4453	0.45	-0.6
94,177	-		GFF4453	0.45	-1.9
94,177	-		GFF4453	0.45	+0.6
94,177	-		GFF4453	0.45	-1.8
94,177	-		GFF4453	0.45	+0.6
94,177	-		GFF4453	0.45	-0.6
94,177	-		GFF4453	0.45	-1.2
94,177	-		GFF4453	0.45	-1.8
94,177	-		GFF4453	0.45	+0.4
94,185	+		GFF4453	0.46	-1.2
94,185	+		GFF4453	0.46	+0.8
94,185	+		GFF4453	0.46	-1.7
94,185	+		GFF4453	0.46	+0.2
94,185	+		GFF4453	0.46	+1.9
94,185	+		GFF4453	0.46	-1.2
94,185	+		GFF4453	0.46	-0.6
94,185	+		GFF4453	0.46	+0.2
94,185	+		GFF4453	0.46	+0.8
94,185	+		GFF4453	0.46	+1.0
94,185	+		GFF4453	0.46	-1.5
94,185	+		GFF4453	0.46	-0.6
94,186	-		GFF4453	0.46	-1.4
94,186	-		GFF4453	0.46	-2.4
94,186	-		GFF4453	0.46	-0.6
94,186	-		GFF4453	0.46	+0.4
94,186	-		GFF4453	0.46	-1.0
94,186	-		GFF4453	0.46	+0.2
94,186	-		GFF4453	0.46	-1.5
94,186	-		GFF4453	0.46	-0.2
94,186	-		GFF4453	0.46	-2.0
94,186	-		GFF4453	0.46	-1.5
94,186	-		GFF4453	0.46	-1.0
94,260	+		GFF4453	0.57	+0.1
94,261	-		GFF4453	0.57	+1.4
94,261	-		GFF4453	0.57	-1.5
94,299	+		GFF4453	0.63	+2.0
94,300	-		GFF4453	0.63	+0.1
94,305	+		GFF4453	0.64	+1.2
94,306	-		GFF4453	0.64	-0.3
94,306	-		GFF4453	0.64	+0.5
94,320	+		GFF4453	0.66	-0.6
94,320	+		GFF4453	0.66	-0.0
94,320	+		GFF4453	0.66	-0.4
94,320	+		GFF4453	0.66	+0.8
94,320	+		GFF4453	0.66	-0.2
94,320	+		GFF4453	0.66	+0.6
94,320	+		GFF4453	0.66	-3.4
94,320	+		GFF4453	0.66	-0.8
94,320	+		GFF4453	0.66	+1.0
94,321	-		GFF4453	0.67	-2.6
94,321	-		GFF4453	0.67	-1.0
94,321	-		GFF4453	0.67	+1.1
94,539	+				-4.2
94,539	+				-0.8
94,539	+				-3.1
94,539	+				-0.6
94,540	-				-0.2
94,540	-				-2.0
94,540	-				+0.3
94,540	-				+0.0
94,624	+				-2.4
94,624	+				-0.2
94,624	+				-0.5
94,624	+				-1.1
94,624	+				+1.9
94,624	+				-0.2
94,624	+				-2.4
94,624	+				+1.3
94,625	-				-1.8
94,625	-				-0.7
94,625	-				-0.4
94,632	+				-4.1
94,632	+				-1.2
94,632	+				-2.6
94,632	+				-1.8
94,633	-				-1.8
94,633	-				-2.8
94,633	-				-2.2
94,633	-				-0.4
94,633	-				-2.2
94,656	-				-0.4
94,883	+		GFF4454	0.13	-0.2
94,883	+		GFF4454	0.13	-1.9
94,952	+		GFF4454	0.16	-1.9
94,953	-		GFF4454	0.16	-1.7
94,953	-		GFF4454	0.16	-1.4
95,117	+		GFF4454	0.24	-1.2
95,117	+		GFF4454	0.24	+0.6
95,118	-		GFF4454	0.24	-1.8
95,118	-		GFF4454	0.24	-0.6
95,156	+		GFF4454	0.26	-0.4
95,157	-		GFF4454	0.26	-1.5
95,157	-		GFF4454	0.26	-2.3
95,240	+		GFF4454	0.30	+0.6
95,522	+		GFF4454	0.44	-0.2
95,522	+		GFF4454	0.44	-0.8
95,522	+		GFF4454	0.44	-2.2
95,522	+		GFF4454	0.44	-0.4
95,522	+		GFF4454	0.44	-0.2
95,522	+		GFF4454	0.44	-0.4
95,522	+		GFF4454	0.44	-1.7
95,523	-		GFF4454	0.44	-0.6
95,523	-		GFF4454	0.44	+0.2
95,523	-		GFF4454	0.44	-1.9
95,535	-		GFF4454	0.44	-0.6