Strain Fitness in Variovorax sp. SCN45 around GFF4410

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
46,074	+		GFF4409	0.86	-2.0
46,074	+		GFF4409	0.86	-1.5
46,074	+		GFF4409	0.86	+1.8
46,074	+		GFF4409	0.86	-0.6
46,074	+		GFF4409	0.86	-1.0
46,074	+		GFF4409	0.86	+1.4
46,075	-		GFF4409	0.86	-2.1
46,085	+		GFF4409	0.87	-2.0
46,085	+		GFF4409	0.87	-1.9
46,085	+		GFF4409	0.87	+0.6
46,085	+		GFF4409	0.87	-0.2
46,085	+		GFF4409	0.87	+1.2
46,085	+		GFF4409	0.87	-1.2
46,085	+		GFF4409	0.87	+0.5
46,085	+		GFF4409	0.87	-2.7
46,085	+		GFF4409	0.87	+1.4
46,085	+		GFF4409	0.87	+1.1
46,085	+		GFF4409	0.87	-3.1
46,085	+		GFF4409	0.87	+0.6
46,085	+		GFF4409	0.87	+0.6
46,085	+		GFF4409	0.87	+2.8
46,085	+		GFF4409	0.87	-0.8
46,085	+		GFF4409	0.87	-1.6
46,085	+		GFF4409	0.87	-2.7
46,085	+		GFF4409	0.87	-0.0
46,086	-		GFF4409	0.87	+0.7
46,086	-		GFF4409	0.87	-4.2
46,086	-		GFF4409	0.87	+2.2
46,086	-		GFF4409	0.87	-0.1
46,086	-		GFF4409	0.87	-3.6
46,086	-		GFF4409	0.87	-0.8
46,086	-		GFF4409	0.87	-0.3
46,086	-		GFF4409	0.87	-1.8
46,086	-		GFF4409	0.87	+1.0
46,086	-		GFF4409	0.87	-1.4
46,086	-		GFF4409	0.87	+0.3
46,086	-		GFF4409	0.87	-2.9
46,089	+		GFF4409	0.87	-1.4
46,089	+		GFF4409	0.87	+0.3
46,089	+		GFF4409	0.87	+0.0
46,089	+		GFF4409	0.87	-2.4
46,089	+		GFF4409	0.87	+0.9
46,089	+		GFF4409	0.87	-1.0
46,089	+		GFF4409	0.87	-0.4
46,089	+		GFF4409	0.87	-1.3
46,089	+		GFF4409	0.87	-0.1
46,089	+		GFF4409	0.87	-0.8
46,089	+		GFF4409	0.87	+1.0
46,089	+		GFF4409	0.87	-0.2
46,089	+		GFF4409	0.87	+1.3
46,089	+		GFF4409	0.87	-1.9
46,089	+		GFF4409	0.87	+0.6
46,089	+		GFF4409	0.87	+1.7
46,089	+		GFF4409	0.87	+0.7
46,089	+		GFF4409	0.87	-1.0
46,089	+		GFF4409	0.87	-0.0
46,089	+		GFF4409	0.87	-1.5
46,089	+		GFF4409	0.87	-0.2
46,090	-		GFF4409	0.87	-0.2
46,090	-		GFF4409	0.87	-0.8
46,090	-		GFF4409	0.87	-1.4
46,090	-		GFF4409	0.87	-0.2
46,090	-		GFF4409	0.87	-2.5
46,090	-		GFF4409	0.87	-2.5
46,090	-		GFF4409	0.87	-2.1
46,090	-		GFF4409	0.87	-0.8
46,090	-		GFF4409	0.87	+0.8
46,090	-		GFF4409	0.87	-1.8
46,090	-		GFF4409	0.87	-0.3
46,090	-		GFF4409	0.87	-0.7
46,090	-		GFF4409	0.87	-2.0
46,090	-		GFF4409	0.87	-0.2
46,090	-		GFF4409	0.87	-0.8
46,090	-		GFF4409	0.87	-2.2
46,090	-		GFF4409	0.87	+1.6
46,090	-		GFF4409	0.87	-3.3
46,119	+		GFF4409	0.89	-0.3
46,119	+		GFF4409	0.89	-3.4
46,119	+		GFF4409	0.89	+0.9
46,119	+		GFF4409	0.89	+2.2
46,119	+		GFF4409	0.89	+0.0
46,119	+		GFF4409	0.89	-2.6
46,119	+		GFF4409	0.89	-0.4
46,119	+		GFF4409	0.89	-0.3
46,119	+		GFF4409	0.89	+2.2
46,120	-		GFF4409	0.89	+0.7
46,120	-		GFF4409	0.89	-1.3
46,120	-		GFF4409	0.89	-0.7
46,120	-		GFF4409	0.89	-1.6
46,120	-		GFF4409	0.89	+0.2
46,127	+		GFF4409	0.89	-1.5
46,127	+		GFF4409	0.89	-0.8
46,127	+		GFF4409	0.89	+0.5
46,128	-		GFF4409	0.89	-1.0
46,128	-		GFF4409	0.89	-3.1
46,128	-		GFF4409	0.89	-2.5
46,128	-		GFF4409	0.89	+0.6
46,128	-		GFF4409	0.89	-0.6
46,327	-				+1.2
46,352	-				-2.1
46,352	-				-2.4
46,352	-				-0.1
46,352	-				-2.6
46,391	+				-2.6
46,391	+				+0.8
46,392	-				-1.8
46,392	-				+0.4
46,419	+				-2.6
46,419	+				-2.2
46,420	-				-0.0
46,420	-				-3.0
46,420	-				-0.6
46,420	-				+1.2
46,420	-				+1.5
46,420	-				+0.8
46,435	+				+1.3
46,435	+				-0.8
46,435	+				+0.2
46,435	+				-0.3
46,436	-				-1.8
46,436	-				+3.9
46,474	+				-0.8
46,474	+				-0.2
46,474	+				-2.5
46,474	+				+0.7
46,474	+				+0.1
46,474	+				-0.2
46,474	+				-0.6
46,475	-				-3.4
46,475	-				+4.0
46,475	-				-1.0
46,475	-				-0.4
46,475	-				-1.1
46,475	-				-1.0
46,475	-				-0.7
46,500	+				-1.7
46,500	+				-2.1
46,519	+				+0.6
46,560	+				-0.5
46,560	+				-1.2
46,560	+				-0.2
46,560	+				+1.5
46,560	+				+0.8
46,561	-				+0.1
46,561	-				-1.4
46,561	-				+1.2
46,641	+				+1.2
46,641	+				+2.6
46,641	+				-2.5
46,641	+				+0.3
46,641	+				+2.2
46,641	+				+2.5
46,641	+				+1.2
46,641	+				-0.6
46,641	+				-2.2
46,641	+				-2.2
46,641	+				-1.9
46,642	-				-2.5
46,642	-				-1.8
46,642	-				-0.3
46,642	-				+1.1
46,642	-				-0.8
46,642	-				-1.4
46,642	-				+1.3
46,642	-				-1.3
46,642	-				-0.4
46,642	-				-1.4
46,776	+				-0.4
46,776	+				-0.1
46,776	+				-3.9
46,776	+				-2.9
46,776	+				-1.4
46,777	-				-0.1
46,867	+				-0.6
46,867	+				-0.4
46,867	+				-1.4
46,867	+				-0.6
46,867	+				-1.6
46,868	-				-0.2
46,868	-				+0.3
46,868	-				-1.7
46,868	-				-2.7
46,868	-				+1.1
46,900	+				-1.0
46,900	+				+0.5
46,900	+				-1.3
46,900	+				+1.5
46,900	+				-0.5
46,900	+				-0.3
46,900	+				-0.8
46,900	+				-1.0
46,900	+				-1.3
46,900	+				-0.3
46,900	+				-0.8
46,900	+				-0.4
46,900	+				-1.4
46,901	-				-1.0
46,901	-				+0.3
46,901	-				+0.9
46,901	-				-2.2
46,901	-				-2.5
46,907	+				-0.2
46,907	+				+1.2
46,907	+				-1.7
46,907	+				+1.6
46,907	+				-0.4
46,907	+				+0.8
46,908	-				+1.1
46,908	-				-3.2
46,908	-				+0.2
46,908	-				-1.5
46,908	-				-3.6
46,908	-				-2.4
46,908	-				-0.3
46,908	-				-1.6
46,977	+				-0.2
46,977	+				-3.0
46,977	+				+1.2
46,977	+				+0.6
46,977	+				-1.6
46,977	+				-2.2
46,977	+				+0.5
46,977	+				+1.2
46,977	+				-1.0
46,977	+				+2.5
46,977	+				+0.3
46,977	+				+0.9
46,977	+				-2.8
46,977	+				-2.7
46,977	+				-0.5
46,977	+				+0.6
46,978	-				-1.0
46,978	-				-0.5
46,978	-				-1.4
46,978	-				-0.3
46,978	-				+1.5
46,978	-				+0.6
46,978	-				+0.8
46,978	-				+0.6
46,978	-				-1.2
46,978	-				+1.2
46,978	-				+1.4
46,978	-				-1.6
46,978	-				+0.6
46,978	-				-2.4
46,978	-				-0.7
46,978	-				-0.1
46,978	-				-0.3
46,978	-				+0.8
46,978	-				-0.4
46,978	-				+1.3
46,978	-				+1.4
46,993	-				-1.4
46,993	-				+0.5
46,993	-				-0.0
46,993	-				-0.0
47,068	+				+0.8
47,068	+				-0.3
47,068	+				-1.3
47,068	+				-3.8
47,068	+				+0.2
47,068	+				-2.8
47,068	+				+1.2
47,068	+				-1.7
47,068	+				-1.2
47,068	+				-1.8
47,068	+				-0.0
47,068	+				-2.5
47,068	+				-1.9
47,068	+				+0.2
47,068	+				-0.3
47,068	+				-3.0
47,068	+				+0.0
47,068	+				-1.1
47,068	+				-2.5
47,068	+				+1.9
47,068	+				+0.3
47,068	+				-1.2
47,068	+				-0.7
47,069	-				-0.1
47,069	-				-0.8
47,069	-				-0.2
47,069	-				+0.2
47,069	-				+1.8
47,069	-				-1.2
47,069	-				-2.1
47,069	-				-0.5
47,069	-				+0.0
47,069	-				-0.5
47,069	-				+3.1
47,069	-				+1.3
47,069	-				-0.8
47,069	-				+1.2
47,069	-				-1.3
47,069	-				-1.4
47,069	-				-1.8
47,069	-				-1.9
47,069	-				+1.3
47,069	-				+1.5
47,069	-				-0.2
47,069	-				-0.6
47,069	-				-1.3
47,069	-				-0.7
47,070	+				-1.3
47,070	+				-2.3
47,070	+				-0.6
47,120	+		GFF4410	0.13	-1.6
47,120	+		GFF4410	0.13	+2.5
47,120	+		GFF4410	0.13	+0.6
47,120	+		GFF4410	0.13	-0.1
47,120	+		GFF4410	0.13	-2.2
47,120	+		GFF4410	0.13	-0.6
47,120	+		GFF4410	0.13	+0.7
47,120	+		GFF4410	0.13	-0.5
47,120	+		GFF4410	0.13	-0.4
47,120	+		GFF4410	0.13	-2.3
47,120	+		GFF4410	0.13	+1.3
47,121	-		GFF4410	0.14	+2.7
47,121	-		GFF4410	0.14	+0.4
47,121	-		GFF4410	0.14	+0.2
47,121	-		GFF4410	0.14	-1.2
47,121	-		GFF4410	0.14	+0.6
47,121	-		GFF4410	0.14	-1.3
47,121	-		GFF4410	0.14	-2.5
47,121	-		GFF4410	0.14	-2.6
47,121	-		GFF4410	0.14	-0.4
47,142	+		GFF4410	0.16	-1.4
47,142	+		GFF4410	0.16	-1.5
47,142	+		GFF4410	0.16	-0.2
47,142	+		GFF4410	0.16	-1.6
47,142	+		GFF4410	0.16	-1.3
47,143	-		GFF4410	0.16	-2.5
47,143	-		GFF4410	0.16	-0.6
47,143	-		GFF4410	0.16	+1.3
47,143	-		GFF4410	0.16	-0.1
47,292	+		GFF4410	0.32	-0.3
47,292	+		GFF4410	0.32	-1.4
47,292	+		GFF4410	0.32	-0.9
47,292	+		GFF4410	0.32	-0.9
47,293	-		GFF4410	0.32	-0.2
47,293	-		GFF4410	0.32	+0.1
47,324	+		GFF4410	0.35	-1.9
47,324	+		GFF4410	0.35	-1.2
47,324	+		GFF4410	0.35	-0.1
47,324	+		GFF4410	0.35	+0.4
47,324	+		GFF4410	0.35	-0.8
47,324	+		GFF4410	0.35	-1.2
47,324	+		GFF4410	0.35	-3.3
47,324	+		GFF4410	0.35	-3.2
47,324	+		GFF4410	0.35	+0.2
47,324	+		GFF4410	0.35	-1.8
47,324	+		GFF4410	0.35	-0.9
47,325	-		GFF4410	0.35	+0.2
47,325	-		GFF4410	0.35	-1.4
47,325	-		GFF4410	0.35	+0.6
47,325	-		GFF4410	0.35	+0.8
47,325	-		GFF4410	0.35	-1.3
47,325	-		GFF4410	0.35	+1.3
47,325	-		GFF4410	0.35	-0.6
47,325	-		GFF4410	0.35	-1.2
47,325	-		GFF4410	0.35	+2.6
47,325	-		GFF4410	0.35	-2.6
47,325	-		GFF4410	0.35	-2.3
47,325	-		GFF4410	0.35	+0.2
47,325	-		GFF4410	0.35	+0.7
47,325	-		GFF4410	0.35	-0.6
47,325	-		GFF4410	0.35	-1.2
47,357	+		GFF4410	0.39	-1.9
47,413	+		GFF4410	0.44	-0.0
47,413	+		GFF4410	0.44	+2.2
47,413	+		GFF4410	0.44	-0.7
47,413	+		GFF4410	0.44	-2.0
47,413	+		GFF4410	0.44	-3.7
47,413	+		GFF4410	0.44	-1.1
47,413	+		GFF4410	0.44	-1.2
47,413	+		GFF4410	0.44	-0.1
47,413	+		GFF4410	0.44	-1.9
47,413	+		GFF4410	0.44	+2.6
47,413	+		GFF4410	0.44	-1.6
47,413	+		GFF4410	0.44	+1.2
47,413	+		GFF4410	0.44	+0.2
47,413	+		GFF4410	0.44	+0.5
47,413	+		GFF4410	0.44	-1.9
47,413	+		GFF4410	0.44	-0.2
47,413	+		GFF4410	0.44	-2.0
47,413	+		GFF4410	0.44	-1.5
47,414	-		GFF4410	0.45	-1.0
47,414	-		GFF4410	0.45	+0.9
47,414	-		GFF4410	0.45	-0.8
47,414	-		GFF4410	0.45	+0.4
47,414	-		GFF4410	0.45	-0.4
47,414	-		GFF4410	0.45	+2.2
47,414	-		GFF4410	0.45	-0.4
47,414	-		GFF4410	0.45	+0.6
47,414	-		GFF4410	0.45	+1.3
47,414	-		GFF4410	0.45	-0.1
47,414	-		GFF4410	0.45	-0.6
47,414	-		GFF4410	0.45	+1.4
47,414	-		GFF4410	0.45	-0.2
47,420	+		GFF4410	0.45	-0.6
47,420	+		GFF4410	0.45	-1.1
47,420	+		GFF4410	0.45	-0.7
47,420	+		GFF4410	0.45	+1.2
47,420	+		GFF4410	0.45	+1.3
47,420	+		GFF4410	0.45	-2.5
47,420	+		GFF4410	0.45	-0.6
47,420	+		GFF4410	0.45	+0.7
47,420	+		GFF4410	0.45	+0.3
47,420	+		GFF4410	0.45	-1.0
47,420	+		GFF4410	0.45	+0.2
47,420	+		GFF4410	0.45	-1.4
47,420	+		GFF4410	0.45	+0.4
47,420	+		GFF4410	0.45	+1.2
47,421	-		GFF4410	0.45	+3.4
47,421	-		GFF4410	0.45	-1.3
47,421	-		GFF4410	0.45	-0.7
47,421	-		GFF4410	0.45	-2.0
47,421	-		GFF4410	0.45	-0.3
47,421	-		GFF4410	0.45	-2.1
47,421	-		GFF4410	0.45	+0.4
47,421	-		GFF4410	0.45	-1.0
47,421	-		GFF4410	0.45	-0.8
47,421	-		GFF4410	0.45	+0.7
47,421	-		GFF4410	0.45	+1.9
47,421	-		GFF4410	0.45	+0.0
47,489	+		GFF4410	0.52	+0.3
47,489	+		GFF4410	0.52	-0.8
47,490	-		GFF4410	0.53	+0.5
47,490	-		GFF4410	0.53	-1.5
47,490	-		GFF4410	0.53	-1.2
47,490	-		GFF4410	0.53	-2.6
47,516	+		GFF4410	0.55	-0.4
47,516	+		GFF4410	0.55	+1.8
47,516	+		GFF4410	0.55	+0.7
47,516	+		GFF4410	0.55	+0.6
47,517	-		GFF4410	0.55	-3.2
47,517	-		GFF4410	0.55	-0.2
47,526	+		GFF4410	0.56	-1.3
47,526	+		GFF4410	0.56	+0.2
47,526	+		GFF4410	0.56	+3.2
47,526	+		GFF4410	0.56	+1.6
47,526	+		GFF4410	0.56	-1.8
47,526	+		GFF4410	0.56	-0.5
47,526	+		GFF4410	0.56	-1.6
47,526	+		GFF4410	0.56	+1.2
47,526	+		GFF4410	0.56	-0.0
47,526	+		GFF4410	0.56	+0.6
47,526	+		GFF4410	0.56	+1.6
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