Strain Fitness in Variovorax sp. SCN45 around GFF4381

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
10,644	+				-0.2
10,644	+				+1.1
10,645	-				-1.4
10,645	-				-1.9
10,645	-				-1.7
10,645	-				-0.2
10,834	+		GFF4379	0.62	-2.7
10,834	+		GFF4379	0.62	-0.6
10,834	+		GFF4379	0.62	-0.6
10,834	+		GFF4379	0.62	-1.3
10,834	+		GFF4379	0.62	+1.0
10,834	+		GFF4379	0.62	+0.7
10,834	+		GFF4379	0.62	-1.9
10,834	+		GFF4379	0.62	-0.0
10,834	+		GFF4379	0.62	+0.3
10,834	+		GFF4379	0.62	-0.2
10,834	+		GFF4379	0.62	-0.2
10,834	+		GFF4379	0.62	-0.6
10,834	+		GFF4379	0.62	+1.9
10,834	+		GFF4379	0.62	-1.9
10,834	+		GFF4379	0.62	+2.2
10,834	+		GFF4379	0.62	-0.6
10,834	+		GFF4379	0.62	+0.2
10,834	+		GFF4379	0.62	-4.9
10,835	-		GFF4379	0.62	-3.0
10,835	-		GFF4379	0.62	-1.9
10,835	-		GFF4379	0.62	-1.0
10,835	-		GFF4379	0.62	+0.5
10,835	-		GFF4379	0.62	+1.5
10,835	-		GFF4379	0.62	-0.6
10,835	-		GFF4379	0.62	-1.5
10,835	-		GFF4379	0.62	+0.3
10,835	-		GFF4379	0.62	-0.5
10,835	-		GFF4379	0.62	+1.1
10,835	-		GFF4379	0.62	-2.7
10,835	-		GFF4379	0.62	-0.1
10,835	-		GFF4379	0.62	-1.7
10,835	-		GFF4379	0.62	+1.2
10,835	-		GFF4379	0.62	+0.2
10,835	-		GFF4379	0.62	-1.3
10,835	-		GFF4379	0.62	-1.2
10,835	-		GFF4379	0.62	+3.2
10,835	-		GFF4379	0.62	-0.6
10,835	-		GFF4379	0.62	+0.2
10,835	-		GFF4379	0.62	+1.3
10,835	-		GFF4379	0.62	-0.6
10,879	+		GFF4379	0.76	+0.5
10,879	+		GFF4379	0.76	+0.4
10,879	+		GFF4379	0.76	+0.6
10,879	+		GFF4379	0.76	+0.7
10,879	+		GFF4379	0.76	-0.3
10,879	+		GFF4379	0.76	+2.0
10,879	+		GFF4379	0.76	+0.7
10,879	+		GFF4379	0.76	+2.0
10,880	-		GFF4379	0.77	-0.5
10,880	-		GFF4379	0.77	-1.1
10,880	-		GFF4379	0.77	-0.9
10,880	-		GFF4379	0.77	+1.0
10,880	-		GFF4379	0.77	+1.3
10,908	+		GFF4379	0.85	-0.1
10,908	+		GFF4379	0.85	-0.5
10,908	+		GFF4379	0.85	-2.5
10,908	+		GFF4379	0.85	+0.7
10,909	-		GFF4379	0.86	-1.0
11,026	-				+0.2
11,026	-				-0.8
11,026	-				-0.1
11,026	-				-1.0
11,115	+		GFF4380	0.33	-2.4
11,115	+		GFF4380	0.33	-0.2
11,115	+		GFF4380	0.33	-0.2
11,144	+		GFF4380	0.43	+2.2
11,144	+		GFF4380	0.43	+2.4
11,144	+		GFF4380	0.43	-1.0
11,144	+		GFF4380	0.43	+2.9
11,144	+		GFF4380	0.43	-1.7
11,144	+		GFF4380	0.43	-0.6
11,144	+		GFF4380	0.43	-1.6
11,144	+		GFF4380	0.43	+0.8
11,144	+		GFF4380	0.43	-2.5
11,144	+		GFF4380	0.43	+2.6
11,144	+		GFF4380	0.43	-0.2
11,144	+		GFF4380	0.43	+0.6
11,144	+		GFF4380	0.43	-0.8
11,145	-		GFF4380	0.44	+0.2
11,145	-		GFF4380	0.44	-1.8
11,145	-		GFF4380	0.44	-1.6
11,145	-		GFF4380	0.44	-2.6
11,145	-		GFF4380	0.44	-0.7
11,145	-		GFF4380	0.44	-0.0
11,145	-		GFF4380	0.44	-2.8
11,145	-		GFF4380	0.44	-2.0
11,145	-		GFF4380	0.44	+1.2
11,218	+		GFF4380	0.70	-0.6
11,218	+		GFF4380	0.70	+1.0
11,218	+		GFF4380	0.70	+1.2
11,218	+		GFF4380	0.70	-2.6
11,218	+		GFF4380	0.70	+1.7
11,218	+		GFF4380	0.70	-1.2
11,218	+		GFF4380	0.70	-1.4
11,218	+		GFF4380	0.70	-1.8
11,218	+		GFF4380	0.70	-0.2
11,218	+		GFF4380	0.70	-1.8
11,218	+		GFF4380	0.70	+0.6
11,218	+		GFF4380	0.70	-0.5
11,219	-		GFF4380	0.71	-0.3
11,219	-		GFF4380	0.71	-1.0
11,219	-		GFF4380	0.71	+0.8
11,219	-		GFF4380	0.71	+1.7
11,219	-		GFF4380	0.71	+1.0
11,219	-		GFF4380	0.71	+0.8
11,219	-		GFF4380	0.71	+1.0
11,219	-		GFF4380	0.71	+1.2
11,219	-		GFF4380	0.71	-0.4
11,219	-		GFF4380	0.71	+1.9
11,219	-		GFF4380	0.71	-0.4
11,219	-		GFF4380	0.71	-0.6
11,219	-		GFF4380	0.71	+1.2
11,220	+		GFF4380	0.71	-1.4
11,220	+		GFF4380	0.71	-2.1
11,220	+		GFF4380	0.71	+0.6
11,220	+		GFF4380	0.71	-0.8
11,220	+		GFF4380	0.71	-0.2
11,220	+		GFF4380	0.71	-1.2
11,220	+		GFF4380	0.71	-0.7
11,220	+		GFF4380	0.71	+1.9
11,220	+		GFF4380	0.71	-1.2
11,220	+		GFF4380	0.71	-2.3
11,220	+		GFF4380	0.71	-0.4
11,220	+		GFF4380	0.71	+1.2
11,220	+		GFF4380	0.71	+0.7
11,220	+		GFF4380	0.71	-2.7
11,220	+		GFF4380	0.71	-0.9
11,220	+		GFF4380	0.71	-0.5
11,220	+		GFF4380	0.71	+0.2
11,220	+		GFF4380	0.71	-0.6
11,220	+		GFF4380	0.71	-0.8
11,220	+		GFF4380	0.71	-1.2
11,220	+		GFF4380	0.71	+1.2
11,220	+		GFF4380	0.71	-0.8
11,220	+		GFF4380	0.71	-0.6
11,220	+		GFF4380	0.71	+0.2
11,220	+		GFF4380	0.71	+0.7
11,220	+		GFF4380	0.71	+1.8
11,220	+		GFF4380	0.71	-0.2
11,220	+		GFF4380	0.71	-1.4
11,220	+		GFF4380	0.71	+0.2
11,220	+		GFF4380	0.71	-0.6
11,220	+		GFF4380	0.71	+1.4
11,220	+		GFF4380	0.71	+1.4
11,220	+		GFF4380	0.71	+1.0
11,220	+		GFF4380	0.71	+0.8
11,220	+		GFF4380	0.71	-0.2
11,221	-		GFF4380	0.71	-0.6
11,221	-		GFF4380	0.71	+1.4
11,221	-		GFF4380	0.71	+0.2
11,221	-		GFF4380	0.71	-0.7
11,221	-		GFF4380	0.71	-1.3
11,221	-		GFF4380	0.71	+0.4
11,221	-		GFF4380	0.71	-1.7
11,221	-		GFF4380	0.71	-0.6
11,221	-		GFF4380	0.71	+0.4
11,221	-		GFF4380	0.71	-0.4
11,221	-		GFF4380	0.71	-0.8
11,221	-		GFF4380	0.71	+2.8
11,221	-		GFF4380	0.71	-2.4
11,221	-		GFF4380	0.71	-0.9
11,221	-		GFF4380	0.71	-0.7
11,221	-		GFF4380	0.71	-1.9
11,221	-		GFF4380	0.71	-0.6
11,221	-		GFF4380	0.71	-1.2
11,221	-		GFF4380	0.71	+0.2
11,221	-		GFF4380	0.71	-1.3
11,221	-		GFF4380	0.71	-0.8
11,221	-		GFF4380	0.71	+0.8
11,221	-		GFF4380	0.71	-0.1
11,221	-		GFF4380	0.71	-0.5
11,221	-		GFF4380	0.71	-1.2
11,221	-		GFF4380	0.71	-0.8
11,221	-		GFF4380	0.71	-1.7
11,221	-		GFF4380	0.71	-1.2
11,221	-		GFF4380	0.71	-1.3
11,221	-		GFF4380	0.71	+1.3
11,221	-		GFF4380	0.71	+0.8
11,221	-		GFF4380	0.71	+0.6
11,221	-		GFF4380	0.71	+0.2
11,224	+		GFF4380	0.72	-0.4
11,224	+		GFF4380	0.72	-2.5
11,224	+		GFF4380	0.72	+0.2
11,224	+		GFF4380	0.72	-1.2
11,224	+		GFF4380	0.72	+0.3
11,224	+		GFF4380	0.72	-2.8
11,224	+		GFF4380	0.72	-0.6
11,224	+		GFF4380	0.72	-4.2
11,224	+		GFF4380	0.72	+2.2
11,225	-		GFF4380	0.73	-1.8
11,225	-		GFF4380	0.73	-3.5
11,225	-		GFF4380	0.73	+0.4
11,225	-		GFF4380	0.73	+0.9
11,225	-		GFF4380	0.73	-0.3
11,225	-		GFF4380	0.73	+1.8
11,225	-		GFF4380	0.73	+0.2
11,225	-		GFF4380	0.73	-1.2
11,225	-		GFF4380	0.73	+0.6
11,334	+				-1.4
11,380	-				-0.4
11,400	+				+2.5
11,410	+				-0.6
11,411	-				-0.9
11,411	-				-2.0
11,422	+				-0.4
11,422	+				-1.2
11,423	-				-0.2
11,449	-				-1.0
11,466	+				+0.1
11,466	+				-0.2
11,466	+				-1.1
11,467	-				-0.8
11,467	-				-1.3
11,467	-				+1.9
11,467	-				-0.8
11,518	+				+1.6
11,518	+				+0.2
11,518	+				-2.5
11,518	+				+0.3
11,518	+				+0.1
11,518	+				-0.6
11,518	+				-0.2
11,519	-				-1.0
11,519	-				+1.7
11,519	-				+0.9
11,544	+				+0.2
11,544	+				-1.3
11,544	+				+0.2
11,544	+				-0.6
11,544	+				-1.4
11,544	+				-1.3
11,544	+				+2.8
11,544	+				+0.7
11,544	+				+0.7
11,544	+				-2.5
11,544	+				-0.2
11,544	+				-0.2
11,544	+				+1.3
11,544	+				+1.0
11,545	-				+0.2
11,545	-				-1.2
11,545	-				+0.2
11,545	-				-0.4
11,545	-				-1.2
11,545	-				-0.4
11,545	-				-0.6
11,545	-				+1.0
11,545	-				+1.2
11,545	-				+0.9
11,777	+		GFF4381	0.40	-1.1
11,809	+		GFF4381	0.49	+0.9
11,809	+		GFF4381	0.49	-0.9
11,809	+		GFF4381	0.49	+1.6
11,809	+		GFF4381	0.49	-1.1
11,810	-		GFF4381	0.49	-0.3
11,810	-		GFF4381	0.49	-0.6
11,918	-		GFF4381	0.80	-1.4
11,918	-		GFF4381	0.80	+0.0
11,918	-		GFF4381	0.80	-0.4
11,918	-		GFF4381	0.80	-0.1
11,947	+		GFF4381	0.88	-1.2
11,947	+		GFF4381	0.88	-2.2
11,947	+		GFF4381	0.88	-0.3
11,947	+		GFF4381	0.88	-0.1
11,947	+		GFF4381	0.88	-1.4
11,947	+		GFF4381	0.88	-0.6
11,948	-		GFF4381	0.88	+0.2
11,948	-		GFF4381	0.88	-0.3
11,948	-		GFF4381	0.88	-1.5
11,948	-		GFF4381	0.88	+0.2
11,948	-		GFF4381	0.88	-2.4
11,948	-		GFF4381	0.88	+0.2
11,948	-		GFF4381	0.88	-1.8
12,030	+				-0.2
12,030	+				-2.2
12,030	+				+0.6
12,030	+				+0.2
12,030	+				-0.8
12,030	+				-0.0
12,030	+				-1.1
12,031	-				-0.3
12,031	-				+1.0
12,031	-				+0.4
12,034	+				+1.5
12,041	+				-2.2
12,041	+				-2.3
12,041	+				-0.2
12,041	+				-0.2
12,041	+				-1.2
12,041	+				-0.1
12,041	+				-0.8
12,041	+				-1.0
12,041	+				+2.8
12,042	-				-3.2
12,042	-				-2.8
12,042	-				-1.0
12,042	-				+2.3
12,233	+				+2.0
12,233	+				-2.4
12,233	+				-0.6
12,234	-				-2.2
12,234	-				-1.3
12,240	+				-0.3
12,240	+				+0.2
12,240	+				-0.8
12,241	-				-0.2
12,276	+				-1.7
12,276	+				+0.2
12,276	+				-0.5
12,276	+				-2.5
12,276	+				+0.8
12,276	+				-1.9
12,276	+				-0.0
12,277	-				-1.6
12,361	-				+0.8
12,375	+				-1.0
12,375	+				-0.5
12,375	+				-0.4
12,375	+				+0.8
12,375	+				+0.1
12,375	+				+0.6
12,375	+				-1.2
12,375	+				+3.3
12,376	-				+0.1
12,376	-				-1.9
12,376	-				-0.0
12,376	-				-1.6
12,376	-				-0.8
12,376	-				+0.1
12,376	-				+0.7
12,376	-				-0.0
12,376	-				+1.8
12,381	+				-0.2
12,381	+				-0.6
12,381	+				+1.3
12,381	+				+0.5
12,381	+				+0.2
12,381	+				+0.9
12,381	+				+0.1
12,382	-				-1.2
12,382	-				-3.4
12,382	-				-1.3
12,382	-				-1.9
12,382	-				-0.5
12,382	-				-0.4
12,382	-				-0.8
12,382	-				+2.2
12,382	-				+0.1
12,420	+		GFF4382	0.11	+0.9
12,420	+		GFF4382	0.11	-1.9
12,420	+		GFF4382	0.11	+1.4
12,420	+		GFF4382	0.11	+0.8
12,420	+		GFF4382	0.11	-0.1
12,421	-		GFF4382	0.11	-0.2
12,421	-		GFF4382	0.11	+0.6
12,421	-		GFF4382	0.11	-0.2
12,421	-		GFF4382	0.11	-1.4
12,421	-		GFF4382	0.11	-1.5
12,421	-		GFF4382	0.11	-1.4
12,676	+		GFF4382	0.44	-0.9
12,676	+		GFF4382	0.44	-0.7
12,676	+		GFF4382	0.44	+0.5
12,676	+		GFF4382	0.44	-1.6
12,676	+		GFF4382	0.44	+0.0
12,676	+		GFF4382	0.44	-0.8
12,676	+		GFF4382	0.44	-0.8
12,676	+		GFF4382	0.44	+0.1
12,677	-		GFF4382	0.45	+2.2
12,677	-		GFF4382	0.45	-2.5
12,677	-		GFF4382	0.45	-1.5
12,747	+		GFF4382	0.54	+2.5
12,747	+		GFF4382	0.54	+1.2
12,747	+		GFF4382	0.54	-0.0
12,747	+		GFF4382	0.54	-1.4
12,747	+		GFF4382	0.54	-0.5
12,747	+		GFF4382	0.54	+0.9
12,747	+		GFF4382	0.54	-0.6
12,747	+		GFF4382	0.54	-1.0
12,748	-		GFF4382	0.54	-0.6
12,748	-		GFF4382	0.54	+1.7
12,748	-		GFF4382	0.54	-0.2
12,748	-		GFF4382	0.54	+0.8
12,748	-		GFF4382	0.54	-3.6
12,748	-		GFF4382	0.54	+1.7
12,748	-		GFF4382	0.54	-0.2
12,753	+		GFF4382	0.54	+1.3
12,753	+		GFF4382	0.54	+1.5
12,753	+		GFF4382	0.54	-2.3
12,753	+		GFF4382	0.54	-0.6
12,753	+		GFF4382	0.54	+0.2
12,753	+		GFF4382	0.54	-0.4
12,754	-		GFF4382	0.55	+0.3
12,754	-		GFF4382	0.55	-0.6
12,754	-		GFF4382	0.55	-3.6
12,754	-		GFF4382	0.55	-2.3
12,754	-		GFF4382	0.55	-0.4
12,789	+		GFF4382	0.59	-3.6
12,896	+		GFF4382	0.73	+0.2
12,896	+		GFF4382	0.73	-2.4
12,896	+		GFF4382	0.73	-0.5
12,896	+		GFF4382	0.73	+0.3
12,896	+		GFF4382	0.73	-1.2
12,896	+		GFF4382	0.73	-0.4
12,896	+		GFF4382	0.73	+0.2
12,896	+		GFF4382	0.73	-1.5
12,896	+		GFF4382	0.73	-2.0
12,896	+		GFF4382	0.73	-0.4
12,896	+		GFF4382	0.73	+0.8
12,896	+		GFF4382	0.73	+0.9
12,896	+		GFF4382	0.73	-0.1
12,897	-		GFF4382	0.73	+1.0
12,897	-		GFF4382	0.73	-3.3
12,897	-		GFF4382	0.73	-1.0
12,897	-		GFF4382	0.73	-0.2
12,897	-		GFF4382	0.73	-1.2
12,897	-		GFF4382	0.73	-0.6
12,897	-		GFF4382	0.73	+0.2
12,897	-		GFF4382	0.73	+1.0