Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4308 and GFF4309 are separated by 1 nucleotides GFF4309 and GFF4310 overlap by 4 nucleotides GFF4310 and GFF4311 overlap by 8 nucleotides GFF4311 and GFF4312 are separated by 63 nucleotides
GFF4308 - hypothetical protein, at 228,158 to 229,363
GFF4308
GFF4309 - Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1), at 229,365 to 230,201
GFF4309
GFF4310 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 230,198 to 232,054
GFF4310
GFF4311 - Enoyl-CoA hydratase (EC 4.2.1.17), at 232,047 to 232,892
GFF4311
GFF4312 - Citronellol dehydrogenase; Citronellal dehydrogenase, at 232,956 to 233,825
GFF4312
Position (kb) 230
231
232
233 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 229.304 kb on + strand at 229.304 kb on + strand at 229.305 kb on - strand at 229.305 kb on - strand at 229.310 kb on + strand at 229.311 kb on - strand at 229.867 kb on + strand, within GFF4309 at 229.867 kb on + strand, within GFF4309 at 229.868 kb on - strand, within GFF4309 at 230.016 kb on + strand, within GFF4309 at 230.315 kb on + strand at 230.315 kb on + strand at 230.316 kb on - strand at 230.316 kb on - strand at 231.131 kb on + strand, within GFF4310 at 231.221 kb on + strand, within GFF4310 at 231.221 kb on + strand, within GFF4310 at 231.252 kb on - strand, within GFF4310 at 231.827 kb on + strand, within GFF4310 at 231.827 kb on + strand, within GFF4310 at 232.046 kb on + strand at 232.952 kb on + strand at 232.975 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 229,304 + +0.5 229,304 + +1.0 229,305 - -0.8 229,305 - -0.7 229,310 + -0.2 229,311 - +0.9 229,867 + GFF4309 0.60 -0.3 229,867 + GFF4309 0.60 +2.9 229,868 - GFF4309 0.60 +0.1 230,016 + GFF4309 0.78 -0.9 230,315 + -0.2 230,315 + +0.9 230,316 - +2.9 230,316 - -1.3 231,131 + GFF4310 0.50 -2.6 231,221 + GFF4310 0.55 +0.3 231,221 + GFF4310 0.55 +1.2 231,252 - GFF4310 0.57 -1.1 231,827 + GFF4310 0.88 -1.9 231,827 + GFF4310 0.88 +2.1 232,046 + -1.1 232,952 + -1.4 232,975 - +0.4
Or see this region's nucleotide sequence