Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4282 and GFF4283 are separated by 541 nucleotides GFF4283 and GFF4284 are separated by 102 nucleotides GFF4284 and GFF4285 are separated by 2 nucleotides
GFF4282 - BUG/TctC family periplasmic protein, at 201,901 to 202,902
GFF4282
GFF4283 - Putative transposase InsK for insertion sequence element IS150, at 203,444 to 203,617
GFF4283
GFF4284 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 203,720 to 205,303
GFF4284
GFF4285 - Tricarboxylate transport protein TctC, at 205,306 to 206,241
GFF4285
Position (kb) 203
204
205
206 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 202.900 kb on + strand at 202.901 kb on - strand at 203.331 kb on + strand at 203.331 kb on + strand at 203.331 kb on + strand at 203.408 kb on - strand at 203.426 kb on + strand at 203.523 kb on + strand, within GFF4283 at 203.524 kb on - strand, within GFF4283 at 203.536 kb on - strand, within GFF4283 at 203.536 kb on - strand, within GFF4283 at 203.592 kb on + strand, within GFF4283 at 203.593 kb on - strand, within GFF4283 at 204.045 kb on + strand, within GFF4284 at 204.046 kb on - strand, within GFF4284 at 204.603 kb on + strand, within GFF4284 at 204.604 kb on - strand, within GFF4284 at 204.660 kb on + strand, within GFF4284 at 204.661 kb on - strand, within GFF4284 at 204.681 kb on + strand, within GFF4284 at 204.810 kb on + strand, within GFF4284 at 204.810 kb on + strand, within GFF4284 at 204.810 kb on + strand, within GFF4284 at 204.811 kb on - strand, within GFF4284 at 204.811 kb on - strand, within GFF4284 at 204.811 kb on - strand, within GFF4284 at 205.017 kb on + strand, within GFF4284 at 205.017 kb on + strand, within GFF4284 at 205.206 kb on + strand at 205.294 kb on + strand at 205.295 kb on - strand at 205.811 kb on + strand, within GFF4285 at 205.811 kb on + strand, within GFF4285 at 205.812 kb on - strand, within GFF4285 at 205.926 kb on - strand, within GFF4285
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 202,900 + -0.8 202,901 - +0.5 203,331 + +1.2 203,331 + -0.2 203,331 + -0.2 203,408 - -0.2 203,426 + -0.5 203,523 + GFF4283 0.45 -2.1 203,524 - GFF4283 0.46 +0.6 203,536 - GFF4283 0.53 -0.2 203,536 - GFF4283 0.53 +0.1 203,592 + GFF4283 0.85 -0.5 203,593 - GFF4283 0.86 +1.6 204,045 + GFF4284 0.21 +1.5 204,046 - GFF4284 0.21 +1.2 204,603 + GFF4284 0.56 +1.7 204,604 - GFF4284 0.56 +0.7 204,660 + GFF4284 0.59 +0.1 204,661 - GFF4284 0.59 -0.5 204,681 + GFF4284 0.61 -0.2 204,810 + GFF4284 0.69 +0.3 204,810 + GFF4284 0.69 -1.9 204,810 + GFF4284 0.69 -0.9 204,811 - GFF4284 0.69 -0.6 204,811 - GFF4284 0.69 +3.1 204,811 - GFF4284 0.69 -1.1 205,017 + GFF4284 0.82 -1.2 205,017 + GFF4284 0.82 -0.7 205,206 + -1.4 205,294 + +0.9 205,295 - +0.3 205,811 + GFF4285 0.54 -0.5 205,811 + GFF4285 0.54 +0.1 205,812 - GFF4285 0.54 -2.6 205,926 - GFF4285 0.66 -0.7
Or see this region's nucleotide sequence