Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4263 and GFF4264 are separated by 109 nucleotides GFF4264 and GFF4265 are separated by 27 nucleotides
GFF4263 - TonB-dependent siderophore receptor, at 181,020 to 183,482
GFF4263
GFF4264 - surface antigen gene, at 183,592 to 185,025
GFF4264
GFF4265 - hypothetical protein, at 185,053 to 186,315
GFF4265
Position (kb) 183
184
185
186 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 182.772 kb on + strand, within GFF4263 at 182.787 kb on + strand, within GFF4263 at 182.806 kb on - strand, within GFF4263 at 183.118 kb on - strand, within GFF4263 at 183.118 kb on - strand, within GFF4263 at 183.123 kb on + strand, within GFF4263 at 183.123 kb on + strand, within GFF4263 at 183.123 kb on + strand, within GFF4263 at 183.201 kb on + strand, within GFF4263 at 183.202 kb on - strand, within GFF4263 at 183.202 kb on - strand, within GFF4263 at 183.252 kb on + strand at 183.271 kb on - strand at 183.271 kb on - strand at 183.282 kb on + strand at 183.283 kb on - strand at 183.340 kb on - strand at 183.399 kb on + strand at 183.402 kb on + strand at 183.402 kb on + strand at 183.402 kb on + strand at 183.402 kb on + strand at 183.420 kb on + strand at 183.429 kb on + strand at 183.430 kb on - strand at 183.435 kb on + strand at 183.471 kb on + strand at 183.471 kb on + strand at 183.471 kb on + strand at 183.471 kb on + strand at 183.508 kb on - strand at 183.778 kb on + strand, within GFF4264 at 183.778 kb on + strand, within GFF4264 at 183.779 kb on - strand, within GFF4264 at 183.910 kb on + strand, within GFF4264 at 183.910 kb on + strand, within GFF4264 at 183.911 kb on - strand, within GFF4264 at 184.045 kb on + strand, within GFF4264 at 184.045 kb on + strand, within GFF4264 at 184.045 kb on + strand, within GFF4264 at 184.045 kb on + strand, within GFF4264 at 184.046 kb on - strand, within GFF4264 at 184.075 kb on + strand, within GFF4264 at 184.139 kb on - strand, within GFF4264 at 184.174 kb on + strand, within GFF4264 at 184.175 kb on - strand, within GFF4264 at 184.175 kb on - strand, within GFF4264 at 184.175 kb on - strand, within GFF4264 at 184.175 kb on - strand, within GFF4264 at 184.178 kb on + strand, within GFF4264 at 184.178 kb on + strand, within GFF4264 at 184.178 kb on + strand, within GFF4264 at 184.179 kb on - strand, within GFF4264 at 184.179 kb on - strand, within GFF4264 at 184.210 kb on + strand, within GFF4264 at 184.319 kb on - strand, within GFF4264 at 184.371 kb on + strand, within GFF4264 at 184.372 kb on - strand, within GFF4264 at 184.372 kb on - strand, within GFF4264 at 184.372 kb on - strand, within GFF4264 at 184.463 kb on - strand, within GFF4264 at 184.463 kb on - strand, within GFF4264 at 184.606 kb on + strand, within GFF4264 at 184.606 kb on + strand, within GFF4264 at 184.750 kb on + strand, within GFF4264 at 184.750 kb on + strand, within GFF4264 at 184.751 kb on - strand, within GFF4264 at 184.786 kb on + strand, within GFF4264 at 184.786 kb on + strand, within GFF4264 at 184.786 kb on + strand, within GFF4264 at 184.787 kb on - strand, within GFF4264 at 184.930 kb on + strand at 184.930 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 182,772 + GFF4263 0.71 -0.8 182,787 + GFF4263 0.72 +0.3 182,806 - GFF4263 0.73 -2.3 183,118 - GFF4263 0.85 +0.2 183,118 - GFF4263 0.85 +3.2 183,123 + GFF4263 0.85 +0.6 183,123 + GFF4263 0.85 -1.4 183,123 + GFF4263 0.85 -0.2 183,201 + GFF4263 0.89 +0.1 183,202 - GFF4263 0.89 -1.2 183,202 - GFF4263 0.89 +2.6 183,252 + +0.1 183,271 - +0.1 183,271 - -0.2 183,282 + -0.7 183,283 - +0.3 183,340 - +1.1 183,399 + -0.1 183,402 + +0.0 183,402 + -1.0 183,402 + -4.7 183,402 + -2.3 183,420 + -2.3 183,429 + -0.7 183,430 - +3.8 183,435 + +3.8 183,471 + +0.0 183,471 + -1.1 183,471 + -1.2 183,471 + -1.2 183,508 - -0.3 183,778 + GFF4264 0.13 +2.2 183,778 + GFF4264 0.13 -0.4 183,779 - GFF4264 0.13 +1.9 183,910 + GFF4264 0.22 -1.9 183,910 + GFF4264 0.22 +0.1 183,911 - GFF4264 0.22 -1.8 184,045 + GFF4264 0.32 -0.3 184,045 + GFF4264 0.32 -3.2 184,045 + GFF4264 0.32 +1.1 184,045 + GFF4264 0.32 -0.4 184,046 - GFF4264 0.32 +2.6 184,075 + GFF4264 0.34 +2.3 184,139 - GFF4264 0.38 +2.1 184,174 + GFF4264 0.41 +2.1 184,175 - GFF4264 0.41 -1.6 184,175 - GFF4264 0.41 +1.1 184,175 - GFF4264 0.41 -1.2 184,175 - GFF4264 0.41 -2.6 184,178 + GFF4264 0.41 -0.3 184,178 + GFF4264 0.41 -1.7 184,178 + GFF4264 0.41 +0.6 184,179 - GFF4264 0.41 -2.3 184,179 - GFF4264 0.41 -0.9 184,210 + GFF4264 0.43 -0.7 184,319 - GFF4264 0.51 +0.6 184,371 + GFF4264 0.54 -0.5 184,372 - GFF4264 0.54 +0.1 184,372 - GFF4264 0.54 +0.1 184,372 - GFF4264 0.54 -3.0 184,463 - GFF4264 0.61 -3.3 184,463 - GFF4264 0.61 -3.3 184,606 + GFF4264 0.71 -0.7 184,606 + GFF4264 0.71 +0.5 184,750 + GFF4264 0.81 +0.1 184,750 + GFF4264 0.81 -2.7 184,751 - GFF4264 0.81 +0.3 184,786 + GFF4264 0.83 +1.9 184,786 + GFF4264 0.83 +0.4 184,786 + GFF4264 0.83 -2.2 184,787 - GFF4264 0.83 -0.5 184,930 + +0.1 184,930 + -0.1
Or see this region's nucleotide sequence