Strain Fitness in Variovorax sp. SCN45 around GFF4228

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
139,618	+		GFF4227	0.55	-3.2
139,618	+		GFF4227	0.55	-1.4
139,618	+		GFF4227	0.55	-0.8
139,619	-		GFF4227	0.55	-1.6
139,619	-		GFF4227	0.55	-0.9
140,122	+		GFF4227	0.85	-1.5
140,405	-				-1.8
140,405	-				-0.1
140,407	+				-0.7
140,407	+				-1.2
140,516	-		GFF4228	0.21	-1.4
140,545	+		GFF4228	0.26	-2.6
140,854	+		GFF4228	0.76	-0.2
140,855	-		GFF4228	0.76	+1.8
140,855	-		GFF4228	0.76	-0.7
140,864	-		GFF4228	0.77	-0.6
140,908	+		GFF4228	0.85	-1.9
140,909	-		GFF4228	0.85	+0.5
141,002	-				+1.2
141,184	+		GFF4229	0.29	+1.8
141,185	-		GFF4229	0.29	-0.7
141,278	-		GFF4229	0.43	-1.0
141,278	-		GFF4229	0.43	+0.7
141,278	-		GFF4229	0.43	-1.6
141,328	+		GFF4229	0.51	-1.7
141,387	+		GFF4229	0.60	+0.1
141,391	+		GFF4229	0.61	+0.9
141,392	-		GFF4229	0.61	+0.9
141,637	+				+0.3
141,637	+				+0.1
141,637	+				-1.1
141,637	+				+2.6
141,638	-				+0.3
141,638	-				+0.9
141,638	-				+0.8
141,638	-				-1.5
141,638	-				-0.2
141,638	-				-1.1
141,638	-				-2.6
141,638	-				+0.1
141,638	-				-0.2
141,638	-				-2.2
141,638	-				+1.0
141,638	-				-0.8
141,638	-				-1.3
141,666	+				-1.2
141,842	+		GFF4230	0.10	+0.3
141,858	+		GFF4230	0.11	+0.2
141,859	-		GFF4230	0.12	+1.4
141,903	+		GFF4230	0.15	+0.4
141,904	-		GFF4230	0.15	-1.6