Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF420 and GFF422 are separated by 10 nucleotides GFF422 and GFF421 overlap by 9 nucleotides
GFF420 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 454,739 to 456,301
GFF420
GFF422 - no description, at 456,312 to 456,452
GFF422
GFF421 - hypothetical protein, at 456,444 to 459,227
GFF421
Position (kb) 456
457 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 455.730 kb on + strand, within GFF420 at 455.910 kb on + strand, within GFF420 at 455.910 kb on + strand, within GFF420 at 455.910 kb on + strand, within GFF420 at 455.910 kb on + strand, within GFF420 at 455.910 kb on + strand, within GFF420 at 455.910 kb on + strand, within GFF420 at 455.911 kb on - strand, within GFF420 at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.303 kb on + strand at 456.304 kb on - strand at 456.304 kb on - strand at 456.304 kb on - strand at 456.304 kb on - strand at 456.304 kb on - strand at 456.304 kb on - strand at 456.304 kb on - strand at 456.304 kb on - strand at 456.304 kb on - strand at 456.304 kb on - strand at 456.304 kb on - strand at 456.304 kb on - strand at 456.304 kb on - strand at 456.400 kb on + strand, within GFF422 at 456.400 kb on + strand, within GFF422 at 456.400 kb on + strand, within GFF422 at 456.400 kb on + strand, within GFF422 at 456.400 kb on + strand, within GFF422 at 456.400 kb on + strand, within GFF422 at 456.401 kb on - strand, within GFF422 at 456.401 kb on - strand, within GFF422 at 456.401 kb on - strand, within GFF422 at 456.401 kb on - strand, within GFF422 at 456.401 kb on - strand, within GFF422 at 456.401 kb on - strand, within GFF422 at 456.401 kb on - strand, within GFF422 at 456.401 kb on - strand, within GFF422 at 456.401 kb on - strand, within GFF422 at 456.401 kb on - strand, within GFF422 at 456.401 kb on - strand, within GFF422 at 456.771 kb on + strand, within GFF421 at 456.772 kb on - strand, within GFF421 at 456.772 kb on - strand, within GFF421 at 456.772 kb on - strand, within GFF421 at 456.906 kb on + strand, within GFF421 at 457.044 kb on + strand, within GFF421 at 457.044 kb on + strand, within GFF421 at 457.045 kb on - strand, within GFF421 at 457.045 kb on - strand, within GFF421 at 457.045 kb on - strand, within GFF421 at 457.045 kb on - strand, within GFF421 at 457.218 kb on + strand, within GFF421 at 457.218 kb on + strand, within GFF421 at 457.218 kb on + strand, within GFF421 at 457.218 kb on + strand, within GFF421 at 457.219 kb on - strand, within GFF421 at 457.219 kb on - strand, within GFF421 at 457.219 kb on - strand, within GFF421
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 455,730 + GFF420 0.63 +0.7 455,910 + GFF420 0.75 +0.3 455,910 + GFF420 0.75 -1.7 455,910 + GFF420 0.75 +0.7 455,910 + GFF420 0.75 -1.7 455,910 + GFF420 0.75 -1.9 455,910 + GFF420 0.75 -0.7 455,911 - GFF420 0.75 -0.3 456,303 + +1.4 456,303 + +0.7 456,303 + -0.7 456,303 + +0.7 456,303 + +1.1 456,303 + +3.8 456,303 + -0.9 456,303 + -1.5 456,303 + +2.0 456,303 + -0.2 456,303 + -1.8 456,303 + -0.7 456,303 + +0.1 456,303 + +0.8 456,303 + -2.8 456,303 + -1.2 456,303 + -0.5 456,303 + -2.9 456,303 + -0.6 456,303 + +0.8 456,304 - -2.6 456,304 - -1.5 456,304 - +0.0 456,304 - -0.3 456,304 - -1.5 456,304 - -0.3 456,304 - -3.6 456,304 - -1.1 456,304 - -2.0 456,304 - +0.4 456,304 - +1.0 456,304 - -2.3 456,304 - -0.3 456,400 + GFF422 0.62 +1.1 456,400 + GFF422 0.62 -1.9 456,400 + GFF422 0.62 +1.3 456,400 + GFF422 0.62 -0.2 456,400 + GFF422 0.62 -1.7 456,400 + GFF422 0.62 -0.6 456,401 - GFF422 0.63 -2.5 456,401 - GFF422 0.63 -1.8 456,401 - GFF422 0.63 -1.3 456,401 - GFF422 0.63 -1.8 456,401 - GFF422 0.63 +0.8 456,401 - GFF422 0.63 -0.7 456,401 - GFF422 0.63 -0.3 456,401 - GFF422 0.63 +0.1 456,401 - GFF422 0.63 -0.9 456,401 - GFF422 0.63 -0.9 456,401 - GFF422 0.63 +0.7 456,771 + GFF421 0.12 +1.0 456,772 - GFF421 0.12 -1.1 456,772 - GFF421 0.12 -2.2 456,772 - GFF421 0.12 -2.6 456,906 + GFF421 0.17 -0.1 457,044 + GFF421 0.22 +2.2 457,044 + GFF421 0.22 -4.0 457,045 - GFF421 0.22 +0.4 457,045 - GFF421 0.22 +0.2 457,045 - GFF421 0.22 -2.9 457,045 - GFF421 0.22 -1.8 457,218 + GFF421 0.28 +0.6 457,218 + GFF421 0.28 +0.9 457,218 + GFF421 0.28 -3.0 457,218 + GFF421 0.28 -0.7 457,219 - GFF421 0.28 -1.8 457,219 - GFF421 0.28 +1.1 457,219 - GFF421 0.28 -1.7
Or see this region's nucleotide sequence