Strain Fitness in Variovorax sp. SCN45 around GFF4183

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
87,024	+		GFF4181	0.59	+0.5
87,024	+		GFF4181	0.59	+0.5
87,024	+		GFF4181	0.59	+0.4
87,025	-		GFF4181	0.59	-0.9
87,308	+				+1.6
87,308	+				-1.1
87,309	-				-0.6
87,437	+		GFF4182	0.34	-3.0
87,438	-		GFF4182	0.34	-0.1
87,717	-		GFF4182	0.89	-1.1
88,053	+		GFF4183	0.16	-1.5
88,053	+		GFF4183	0.16	-0.2
88,054	-		GFF4183	0.16	+0.9
88,054	-		GFF4183	0.16	-1.2
88,054	-		GFF4183	0.16	-0.7
88,448	+		GFF4183	0.56	+0.0
88,605	+		GFF4183	0.71	+0.0
88,606	-		GFF4183	0.72	+0.5
88,729	-		GFF4183	0.84	+0.4
89,153	-				+3.3
89,874	-				-0.2
89,874	-				-1.4
89,877	+				-0.3
89,877	+				-3.1
89,878	-				-2.0
89,878	-				-0.9
89,878	-				-1.1