Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4155 and GFF4156 overlap by 14 nucleotides GFF4156 and GFF4157 overlap by 4 nucleotides GFF4157 and GFF4158 are separated by 10 nucleotides GFF4158 and GFF4159 overlap by 4 nucleotides
GFF4155 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 61,368 to 62,138
GFF4155
GFF4156 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 62,125 to 62,865
GFF4156
GFF4157 - hypothetical protein, at 62,862 to 63,812
GFF4157
GFF4158 - hypothetical protein, at 63,823 to 64,251
GFF4158
GFF4159 - no description, at 64,248 to 64,967
GFF4159
Position (kb) 62
63
64 Strain fitness (log2 ratio) -2
-1
0
1
2 at 62.104 kb on - strand at 62.104 kb on - strand at 62.428 kb on + strand, within GFF4156 at 62.429 kb on - strand, within GFF4156 at 62.641 kb on + strand, within GFF4156 at 62.642 kb on - strand, within GFF4156 at 62.734 kb on + strand, within GFF4156 at 62.734 kb on + strand, within GFF4156 at 62.887 kb on - strand at 62.887 kb on - strand at 62.994 kb on + strand, within GFF4157 at 62.995 kb on - strand, within GFF4157 at 62.995 kb on - strand, within GFF4157 at 63.910 kb on + strand, within GFF4158 at 63.910 kb on + strand, within GFF4158 at 63.910 kb on + strand, within GFF4158 at 63.911 kb on - strand, within GFF4158 at 64.057 kb on + strand, within GFF4158 at 64.057 kb on + strand, within GFF4158 at 64.057 kb on + strand, within GFF4158 at 64.058 kb on - strand, within GFF4158 at 64.058 kb on - strand, within GFF4158 at 64.058 kb on - strand, within GFF4158 at 64.058 kb on - strand, within GFF4158 at 64.058 kb on - strand, within GFF4158 at 64.058 kb on - strand, within GFF4158 at 64.561 kb on + strand, within GFF4159 at 64.562 kb on + strand, within GFF4159 at 64.563 kb on - strand, within GFF4159 at 64.563 kb on - strand, within GFF4159
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 62,104 - +0.6 62,104 - -0.7 62,428 + GFF4156 0.41 +1.2 62,429 - GFF4156 0.41 -0.7 62,641 + GFF4156 0.70 -0.9 62,642 - GFF4156 0.70 +2.3 62,734 + GFF4156 0.82 +0.1 62,734 + GFF4156 0.82 -0.5 62,887 - -1.1 62,887 - +1.5 62,994 + GFF4157 0.14 -0.6 62,995 - GFF4157 0.14 -2.5 62,995 - GFF4157 0.14 -0.3 63,910 + GFF4158 0.20 -0.9 63,910 + GFF4158 0.20 -0.2 63,910 + GFF4158 0.20 -1.1 63,911 - GFF4158 0.21 -0.3 64,057 + GFF4158 0.55 +0.5 64,057 + GFF4158 0.55 -0.4 64,057 + GFF4158 0.55 -1.9 64,058 - GFF4158 0.55 -1.6 64,058 - GFF4158 0.55 +0.1 64,058 - GFF4158 0.55 +0.9 64,058 - GFF4158 0.55 -2.3 64,058 - GFF4158 0.55 -0.1 64,058 - GFF4158 0.55 +0.5 64,561 + GFF4159 0.43 +0.8 64,562 + GFF4159 0.44 -1.5 64,563 - GFF4159 0.44 -1.4 64,563 - GFF4159 0.44 +1.6
Or see this region's nucleotide sequence