Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4037 and GFF4038 are separated by 17 nucleotides GFF4038 and GFF4039 overlap by 4 nucleotides
GFF4037 - CzcABC family efflux RND transporter, transmembrane protein, at 244,591 to 247,716
GFF4037
GFF4038 - Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family, at 247,734 to 248,951
GFF4038
GFF4039 - Heavy metal RND efflux outer membrane protein, CzcC family, at 248,948 to 250,267
GFF4039
Position (kb) 247
248
249 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 246.944 kb on + strand, within GFF4037 at 246.945 kb on - strand, within GFF4037 at 247.343 kb on + strand, within GFF4037 at 247.406 kb on + strand at 247.567 kb on - strand at 247.568 kb on + strand at 247.569 kb on - strand at 247.572 kb on + strand at 247.573 kb on - strand at 247.700 kb on - strand at 247.783 kb on + strand at 247.783 kb on + strand at 247.783 kb on + strand at 247.883 kb on - strand, within GFF4038 at 248.101 kb on + strand, within GFF4038 at 248.438 kb on - strand, within GFF4038 at 248.488 kb on + strand, within GFF4038 at 248.489 kb on - strand, within GFF4038 at 248.880 kb on - strand at 249.488 kb on - strand, within GFF4039 at 249.804 kb on + strand, within GFF4039 at 249.804 kb on + strand, within GFF4039 at 249.805 kb on - strand, within GFF4039
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 246,944 + GFF4037 0.75 -1.6 246,945 - GFF4037 0.75 +1.0 247,343 + GFF4037 0.88 -0.0 247,406 + -2.2 247,567 - +3.7 247,568 + -0.0 247,569 - -1.7 247,572 + -2.5 247,573 - -3.0 247,700 - -0.4 247,783 + +1.7 247,783 + -3.3 247,783 + +0.6 247,883 - GFF4038 0.12 -2.4 248,101 + GFF4038 0.30 +0.6 248,438 - GFF4038 0.58 -0.5 248,488 + GFF4038 0.62 -1.3 248,489 - GFF4038 0.62 -2.3 248,880 - +0.5 249,488 - GFF4039 0.41 -1.0 249,804 + GFF4039 0.65 +1.7 249,804 + GFF4039 0.65 +0.3 249,805 - GFF4039 0.65 -2.5
Or see this region's nucleotide sequence