Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3995 and GFF3996 are separated by 172 nucleotides GFF3996 and GFF3997 are separated by 299 nucleotides GFF3997 and GFF3998 are separated by 221 nucleotides
GFF3995 - hypothetical protein, at 196,388 to 197,209
GFF3995
GFF3996 - no description, at 197,382 to 197,504
GFF3996
GFF3997 - Short-chain dehydrogenase/reductase SDR, at 197,804 to 198,511
GFF3997
GFF3998 - putative esterase, at 198,733 to 199,599
GFF3998
Position (kb) 197
198
199 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 196.805 kb on + strand, within GFF3995 at 196.805 kb on + strand, within GFF3995 at 196.805 kb on + strand, within GFF3995 at 196.805 kb on + strand, within GFF3995 at 196.805 kb on + strand, within GFF3995 at 196.805 kb on + strand, within GFF3995 at 196.805 kb on + strand, within GFF3995 at 196.806 kb on - strand, within GFF3995 at 196.806 kb on - strand, within GFF3995 at 196.806 kb on - strand, within GFF3995 at 196.806 kb on - strand, within GFF3995 at 196.806 kb on - strand, within GFF3995 at 196.806 kb on - strand, within GFF3995 at 196.806 kb on - strand, within GFF3995 at 196.806 kb on - strand, within GFF3995 at 196.806 kb on - strand, within GFF3995 at 196.806 kb on - strand, within GFF3995 at 196.806 kb on - strand, within GFF3995 at 196.897 kb on + strand, within GFF3995 at 196.897 kb on + strand, within GFF3995 at 196.900 kb on - strand, within GFF3995 at 196.939 kb on + strand, within GFF3995 at 196.939 kb on + strand, within GFF3995 at 196.939 kb on + strand, within GFF3995 at 196.939 kb on + strand, within GFF3995 at 196.939 kb on + strand, within GFF3995 at 196.939 kb on + strand, within GFF3995 at 196.940 kb on - strand, within GFF3995 at 196.940 kb on - strand, within GFF3995 at 196.979 kb on - strand, within GFF3995 at 196.979 kb on - strand, within GFF3995 at 196.979 kb on - strand, within GFF3995 at 197.156 kb on + strand at 197.156 kb on + strand at 197.156 kb on + strand at 197.156 kb on + strand at 197.157 kb on - strand at 197.157 kb on - strand at 197.157 kb on - strand at 197.157 kb on - strand at 197.157 kb on - strand at 197.157 kb on - strand at 197.324 kb on + strand at 197.358 kb on + strand at 197.358 kb on + strand at 197.358 kb on + strand at 197.358 kb on + strand at 197.358 kb on + strand at 197.358 kb on + strand at 197.358 kb on + strand at 197.359 kb on - strand at 197.359 kb on - strand at 197.359 kb on - strand at 197.359 kb on - strand at 197.359 kb on - strand at 197.392 kb on + strand at 197.397 kb on + strand, within GFF3996 at 197.397 kb on + strand, within GFF3996 at 197.397 kb on + strand, within GFF3996 at 197.397 kb on + strand, within GFF3996 at 197.397 kb on + strand, within GFF3996 at 197.398 kb on - strand, within GFF3996 at 197.398 kb on - strand, within GFF3996 at 197.398 kb on - strand, within GFF3996 at 197.531 kb on + strand at 197.580 kb on + strand at 197.580 kb on + strand at 197.580 kb on + strand at 197.581 kb on - strand at 197.682 kb on - strand at 197.755 kb on - strand at 197.832 kb on + strand at 197.832 kb on + strand at 197.832 kb on + strand at 197.832 kb on + strand at 197.832 kb on + strand at 197.832 kb on + strand at 197.832 kb on + strand at 197.832 kb on + strand at 197.832 kb on + strand at 197.832 kb on + strand at 197.832 kb on + strand at 197.832 kb on + strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 197.833 kb on - strand at 198.266 kb on + strand, within GFF3997 at 198.266 kb on + strand, within GFF3997 at 198.266 kb on + strand, within GFF3997 at 198.266 kb on + strand, within GFF3997 at 198.267 kb on - strand, within GFF3997 at 198.267 kb on - strand, within GFF3997 at 198.267 kb on - strand, within GFF3997 at 198.267 kb on - strand, within GFF3997 at 198.267 kb on - strand, within GFF3997 at 198.267 kb on - strand, within GFF3997 at 198.267 kb on - strand, within GFF3997 at 198.633 kb on + strand at 198.633 kb on + strand at 198.633 kb on + strand at 198.633 kb on + strand at 198.633 kb on + strand at 198.633 kb on + strand at 198.634 kb on - strand at 198.634 kb on - strand at 198.634 kb on - strand at 198.634 kb on - strand at 198.634 kb on - strand at 198.634 kb on - strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.742 kb on + strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.743 kb on - strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.770 kb on - strand at 198.770 kb on - strand at 198.770 kb on - strand at 198.770 kb on - strand at 198.770 kb on - strand at 198.770 kb on - strand at 198.770 kb on - strand at 198.770 kb on - strand at 198.770 kb on - strand at 198.770 kb on - strand at 198.770 kb on - strand at 198.770 kb on - strand at 198.806 kb on - strand at 198.875 kb on - strand, within GFF3998 at 198.958 kb on + strand, within GFF3998 at 198.959 kb on - strand, within GFF3998 at 198.959 kb on - strand, within GFF3998 at 199.042 kb on + strand, within GFF3998 at 199.042 kb on + strand, within GFF3998 at 199.042 kb on + strand, within GFF3998 at 199.042 kb on + strand, within GFF3998 at 199.043 kb on - strand, within GFF3998 at 199.043 kb on - strand, within GFF3998 at 199.043 kb on - strand, within GFF3998 at 199.043 kb on - strand, within GFF3998 at 199.043 kb on - strand, within GFF3998 at 199.059 kb on + strand, within GFF3998 at 199.144 kb on + strand, within GFF3998 at 199.144 kb on + strand, within GFF3998 at 199.144 kb on + strand, within GFF3998 at 199.144 kb on + strand, within GFF3998 at 199.144 kb on + strand, within GFF3998 at 199.144 kb on + strand, within GFF3998 at 199.145 kb on - strand, within GFF3998 at 199.145 kb on - strand, within GFF3998 at 199.145 kb on - strand, within GFF3998 at 199.145 kb on - strand, within GFF3998 at 199.145 kb on - strand, within GFF3998 at 199.145 kb on - strand, within GFF3998 at 199.292 kb on - strand, within GFF3998 at 199.408 kb on + strand, within GFF3998 at 199.408 kb on + strand, within GFF3998 at 199.408 kb on + strand, within GFF3998 at 199.408 kb on + strand, within GFF3998 at 199.408 kb on + strand, within GFF3998 at 199.408 kb on + strand, within GFF3998 at 199.408 kb on + strand, within GFF3998 at 199.408 kb on + strand, within GFF3998 at 199.408 kb on + strand, within GFF3998 at 199.409 kb on - strand, within GFF3998 at 199.409 kb on - strand, within GFF3998 at 199.409 kb on - strand, within GFF3998 at 199.409 kb on - strand, within GFF3998 at 199.409 kb on - strand, within GFF3998 at 199.409 kb on - strand, within GFF3998 at 199.409 kb on - strand, within GFF3998 at 199.409 kb on - strand, within GFF3998 at 199.409 kb on - strand, within GFF3998 at 199.409 kb on - strand, within GFF3998 at 199.409 kb on - strand, within GFF3998
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 196,805 + GFF3995 0.51 -0.4 196,805 + GFF3995 0.51 -0.9 196,805 + GFF3995 0.51 -2.1 196,805 + GFF3995 0.51 -0.8 196,805 + GFF3995 0.51 +2.0 196,805 + GFF3995 0.51 -0.8 196,805 + GFF3995 0.51 +1.5 196,806 - GFF3995 0.51 -3.7 196,806 - GFF3995 0.51 +0.2 196,806 - GFF3995 0.51 +0.5 196,806 - GFF3995 0.51 -1.0 196,806 - GFF3995 0.51 -1.3 196,806 - GFF3995 0.51 -2.2 196,806 - GFF3995 0.51 -2.8 196,806 - GFF3995 0.51 -0.0 196,806 - GFF3995 0.51 +1.7 196,806 - GFF3995 0.51 +0.8 196,806 - GFF3995 0.51 +1.4 196,897 + GFF3995 0.62 +1.0 196,897 + GFF3995 0.62 +0.8 196,900 - GFF3995 0.62 +1.1 196,939 + GFF3995 0.67 -1.3 196,939 + GFF3995 0.67 -0.9 196,939 + GFF3995 0.67 -0.0 196,939 + GFF3995 0.67 -1.5 196,939 + GFF3995 0.67 +0.4 196,939 + GFF3995 0.67 +0.6 196,940 - GFF3995 0.67 +0.7 196,940 - GFF3995 0.67 +1.4 196,979 - GFF3995 0.72 -2.1 196,979 - GFF3995 0.72 +0.6 196,979 - GFF3995 0.72 -0.8 197,156 + +1.2 197,156 + -1.2 197,156 + +0.5 197,156 + -0.8 197,157 - +1.0 197,157 - -2.1 197,157 - -0.3 197,157 - +1.1 197,157 - -1.5 197,157 - -0.2 197,324 + +2.4 197,358 + +0.2 197,358 + +0.4 197,358 + -0.2 197,358 + +0.1 197,358 + -0.4 197,358 + -1.0 197,358 + -1.8 197,359 - -2.0 197,359 - -2.7 197,359 - +1.7 197,359 - +1.2 197,359 - +0.7 197,392 + -0.2 197,397 + GFF3996 0.12 +0.3 197,397 + GFF3996 0.12 +1.5 197,397 + GFF3996 0.12 -3.8 197,397 + GFF3996 0.12 +2.0 197,397 + GFF3996 0.12 -0.0 197,398 - GFF3996 0.13 +0.2 197,398 - GFF3996 0.13 -0.6 197,398 - GFF3996 0.13 +0.6 197,531 + +2.3 197,580 + -2.8 197,580 + -1.0 197,580 + -1.3 197,581 - -1.2 197,682 - -0.0 197,755 - -1.0 197,832 + -1.2 197,832 + -1.3 197,832 + -1.2 197,832 + +1.0 197,832 + -0.6 197,832 + -1.0 197,832 + +0.4 197,832 + +2.0 197,832 + -0.6 197,832 + +0.4 197,832 + -0.3 197,832 + +2.0 197,833 - +0.2 197,833 - +0.9 197,833 - -2.5 197,833 - -0.3 197,833 - +2.0 197,833 - -0.4 197,833 - +0.5 197,833 - -1.5 197,833 - +0.6 197,833 - -1.3 197,833 - -0.6 197,833 - +1.3 197,833 - +1.5 197,833 - -1.2 197,833 - -0.0 197,833 - -0.8 197,833 - +0.9 197,833 - +0.8 197,833 - +0.1 197,833 - -1.8 197,833 - -0.8 198,266 + GFF3997 0.65 +0.3 198,266 + GFF3997 0.65 -0.6 198,266 + GFF3997 0.65 +4.6 198,266 + GFF3997 0.65 +2.4 198,267 - GFF3997 0.65 +0.8 198,267 - GFF3997 0.65 -0.6 198,267 - GFF3997 0.65 +2.0 198,267 - GFF3997 0.65 -0.8 198,267 - GFF3997 0.65 +1.0 198,267 - GFF3997 0.65 -0.2 198,267 - GFF3997 0.65 +2.0 198,633 + +0.8 198,633 + -0.3 198,633 + -0.8 198,633 + -1.8 198,633 + -1.2 198,633 + -1.7 198,634 - -0.4 198,634 - +0.4 198,634 - -0.6 198,634 - +0.5 198,634 - -0.6 198,634 - +1.9 198,742 + +0.1 198,742 + -3.7 198,742 + -0.8 198,742 + -1.4 198,742 + -1.4 198,743 - -3.3 198,743 - -0.4 198,743 - -1.2 198,743 - +1.3 198,743 - +2.0 198,769 + -2.9 198,769 + +1.0 198,769 + +0.5 198,769 + +0.6 198,769 + +0.1 198,769 + +0.3 198,769 + -0.2 198,769 + +1.1 198,769 + -1.1 198,769 + -0.0 198,769 + +2.0 198,769 + -2.0 198,769 + -2.6 198,769 + -1.4 198,769 + -0.3 198,769 + -1.0 198,769 + +1.5 198,769 + +1.2 198,769 + -1.1 198,770 - +1.3 198,770 - -1.6 198,770 - -0.4 198,770 - -0.3 198,770 - -1.6 198,770 - -0.7 198,770 - +1.0 198,770 - +1.4 198,770 - +1.5 198,770 - +0.9 198,770 - -0.4 198,770 - +1.0 198,806 - +1.0 198,875 - GFF3998 0.16 +0.6 198,958 + GFF3998 0.26 -0.0 198,959 - GFF3998 0.26 -0.0 198,959 - GFF3998 0.26 +1.3 199,042 + GFF3998 0.36 +1.1 199,042 + GFF3998 0.36 +1.0 199,042 + GFF3998 0.36 +0.3 199,042 + GFF3998 0.36 -2.7 199,043 - GFF3998 0.36 +1.0 199,043 - GFF3998 0.36 -0.6 199,043 - GFF3998 0.36 -0.7 199,043 - GFF3998 0.36 +1.0 199,043 - GFF3998 0.36 +0.6 199,059 + GFF3998 0.38 +0.9 199,144 + GFF3998 0.47 +2.0 199,144 + GFF3998 0.47 -2.5 199,144 + GFF3998 0.47 +1.6 199,144 + GFF3998 0.47 -3.4 199,144 + GFF3998 0.47 +2.1 199,144 + GFF3998 0.47 +0.3 199,145 - GFF3998 0.48 -1.7 199,145 - GFF3998 0.48 +0.8 199,145 - GFF3998 0.48 -1.0 199,145 - GFF3998 0.48 -0.8 199,145 - GFF3998 0.48 +0.3 199,145 - GFF3998 0.48 -1.5 199,292 - GFF3998 0.64 +0.2 199,408 + GFF3998 0.78 +0.8 199,408 + GFF3998 0.78 -1.2 199,408 + GFF3998 0.78 -2.1 199,408 + GFF3998 0.78 -0.8 199,408 + GFF3998 0.78 -1.5 199,408 + GFF3998 0.78 -2.2 199,408 + GFF3998 0.78 -0.5 199,408 + GFF3998 0.78 +2.3 199,408 + GFF3998 0.78 -2.0 199,409 - GFF3998 0.78 -1.8 199,409 - GFF3998 0.78 +0.3 199,409 - GFF3998 0.78 +0.1 199,409 - GFF3998 0.78 +0.2 199,409 - GFF3998 0.78 -0.8 199,409 - GFF3998 0.78 +0.6 199,409 - GFF3998 0.78 -0.6 199,409 - GFF3998 0.78 -0.0 199,409 - GFF3998 0.78 -1.9 199,409 - GFF3998 0.78 +2.6 199,409 - GFF3998 0.78 -1.9
Or see this region's nucleotide sequence