Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3956 and GFF3957 are separated by 6 nucleotides GFF3957 and GFF3958 are separated by 12 nucleotides GFF3958 and GFF3959 are separated by 30 nucleotides
GFF3956 - no description, at 156,887 to 157,930
GFF3956
GFF3957 - Ribosome small subunit biogenesis RbfA-release protein RsgA, at 157,937 to 158,896
GFF3957
GFF3958 - Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96), at 158,909 to 159,268
GFF3958
GFF3959 - Uncharacterized integral membrane endopeptidase Bmul_2226, at 159,299 to 160,558
GFF3959
Position (kb) 158
159
160 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 157.977 kb on + strand at 158.077 kb on - strand, within GFF3957 at 158.214 kb on + strand, within GFF3957 at 158.214 kb on + strand, within GFF3957 at 158.385 kb on + strand, within GFF3957 at 158.891 kb on - strand at 158.904 kb on + strand at 158.905 kb on - strand at 158.905 kb on - strand at 159.027 kb on + strand, within GFF3958 at 159.027 kb on + strand, within GFF3958 at 159.027 kb on + strand, within GFF3958 at 159.027 kb on + strand, within GFF3958 at 159.027 kb on + strand, within GFF3958 at 159.027 kb on + strand, within GFF3958 at 159.028 kb on - strand, within GFF3958 at 159.028 kb on - strand, within GFF3958 at 159.108 kb on + strand, within GFF3958 at 159.108 kb on + strand, within GFF3958 at 159.109 kb on - strand, within GFF3958 at 159.349 kb on - strand at 159.351 kb on + strand at 159.351 kb on + strand at 159.351 kb on + strand at 159.351 kb on + strand at 159.352 kb on - strand at 159.352 kb on - strand at 159.352 kb on - strand at 159.352 kb on - strand at 159.352 kb on - strand at 159.352 kb on - strand at 159.403 kb on - strand at 159.606 kb on + strand, within GFF3959 at 159.606 kb on + strand, within GFF3959 at 159.607 kb on - strand, within GFF3959 at 159.774 kb on + strand, within GFF3959 at 159.775 kb on - strand, within GFF3959 at 159.775 kb on - strand, within GFF3959 at 159.775 kb on - strand, within GFF3959 at 159.775 kb on - strand, within GFF3959 at 159.775 kb on - strand, within GFF3959 at 159.813 kb on + strand, within GFF3959 at 159.814 kb on - strand, within GFF3959 at 159.814 kb on - strand, within GFF3959 at 159.814 kb on - strand, within GFF3959 at 159.814 kb on - strand, within GFF3959 at 159.814 kb on - strand, within GFF3959 at 159.970 kb on - strand, within GFF3959 at 159.970 kb on - strand, within GFF3959
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 157,977 + -0.6 158,077 - GFF3957 0.15 -3.7 158,214 + GFF3957 0.29 -1.9 158,214 + GFF3957 0.29 -3.1 158,385 + GFF3957 0.47 -2.6 158,891 - -4.0 158,904 + +1.4 158,905 - -2.6 158,905 - +0.0 159,027 + GFF3958 0.33 -1.0 159,027 + GFF3958 0.33 -2.8 159,027 + GFF3958 0.33 -0.6 159,027 + GFF3958 0.33 -2.5 159,027 + GFF3958 0.33 +0.3 159,027 + GFF3958 0.33 +0.4 159,028 - GFF3958 0.33 -0.6 159,028 - GFF3958 0.33 +0.7 159,108 + GFF3958 0.55 +0.4 159,108 + GFF3958 0.55 -0.5 159,109 - GFF3958 0.56 -2.0 159,349 - +0.6 159,351 + -3.3 159,351 + -2.7 159,351 + -0.5 159,351 + -0.3 159,352 - -1.2 159,352 - -1.8 159,352 - -2.6 159,352 - +1.0 159,352 - -1.0 159,352 - +1.2 159,403 - -0.8 159,606 + GFF3959 0.24 -0.0 159,606 + GFF3959 0.24 -2.6 159,607 - GFF3959 0.24 -1.2 159,774 + GFF3959 0.38 -2.2 159,775 - GFF3959 0.38 -3.0 159,775 - GFF3959 0.38 -1.0 159,775 - GFF3959 0.38 +0.3 159,775 - GFF3959 0.38 -1.8 159,775 - GFF3959 0.38 -1.8 159,813 + GFF3959 0.41 -1.3 159,814 - GFF3959 0.41 -2.8 159,814 - GFF3959 0.41 -1.7 159,814 - GFF3959 0.41 -1.4 159,814 - GFF3959 0.41 -2.2 159,814 - GFF3959 0.41 -0.0 159,970 - GFF3959 0.53 -1.5 159,970 - GFF3959 0.53 -2.2
Or see this region's nucleotide sequence