Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3912 and GFF3913 are separated by 8 nucleotides GFF3913 and GFF3914 are separated by 19 nucleotides
GFF3912 - Ferrous iron transport permease EfeU, at 117,743 to 118,579
GFF3912
GFF3913 - Ferrous iron transport periplasmic protein EfeO, contains peptidase-M75 domain and (frequently) cupredoxin-like domain, at 118,588 to 119,778
GFF3913
GFF3914 - Ferrous iron transport peroxidase EfeB, at 119,798 to 121,123
GFF3914
Position (kb) 118
119
120 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 117.597 kb on + strand at 117.597 kb on + strand at 117.597 kb on + strand at 117.597 kb on + strand at 117.597 kb on + strand at 117.597 kb on + strand at 117.597 kb on + strand at 117.597 kb on + strand at 117.597 kb on + strand at 117.598 kb on - strand at 117.598 kb on - strand at 117.598 kb on - strand at 117.598 kb on - strand at 117.598 kb on - strand at 117.598 kb on - strand at 117.598 kb on - strand at 117.598 kb on - strand at 117.598 kb on - strand at 117.598 kb on - strand at 117.598 kb on - strand at 117.598 kb on - strand at 117.598 kb on - strand at 117.598 kb on - strand at 117.598 kb on - strand at 117.598 kb on - strand at 117.601 kb on + strand at 117.601 kb on + strand at 117.601 kb on + strand at 117.611 kb on + strand at 117.721 kb on + strand at 117.721 kb on + strand at 117.722 kb on - strand at 117.722 kb on - strand at 117.722 kb on - strand at 117.722 kb on - strand at 117.722 kb on - strand at 117.815 kb on + strand at 117.815 kb on + strand at 117.815 kb on + strand at 117.815 kb on + strand at 117.815 kb on + strand at 117.815 kb on + strand at 117.815 kb on + strand at 117.815 kb on + strand at 117.815 kb on + strand at 117.815 kb on + strand at 117.815 kb on + strand at 117.815 kb on + strand at 117.815 kb on + strand at 117.816 kb on - strand at 117.816 kb on - strand at 117.816 kb on - strand at 118.461 kb on - strand, within GFF3912 at 118.461 kb on - strand, within GFF3912 at 118.496 kb on + strand at 118.496 kb on + strand at 118.497 kb on - strand at 118.693 kb on + strand at 118.693 kb on + strand at 118.693 kb on + strand at 118.693 kb on + strand at 118.693 kb on + strand at 118.694 kb on - strand at 118.694 kb on - strand at 118.694 kb on - strand at 118.694 kb on - strand at 119.047 kb on + strand, within GFF3913 at 119.047 kb on + strand, within GFF3913 at 119.047 kb on + strand, within GFF3913 at 119.047 kb on + strand, within GFF3913 at 119.047 kb on + strand, within GFF3913 at 119.047 kb on + strand, within GFF3913 at 119.047 kb on + strand, within GFF3913 at 119.047 kb on + strand, within GFF3913 at 119.047 kb on + strand, within GFF3913 at 119.048 kb on - strand, within GFF3913 at 119.048 kb on - strand, within GFF3913 at 119.048 kb on - strand, within GFF3913 at 119.048 kb on - strand, within GFF3913 at 119.048 kb on - strand, within GFF3913 at 119.048 kb on - strand, within GFF3913 at 119.048 kb on - strand, within GFF3913 at 119.048 kb on - strand, within GFF3913 at 119.048 kb on - strand, within GFF3913 at 119.048 kb on - strand, within GFF3913 at 119.068 kb on + strand, within GFF3913 at 119.068 kb on + strand, within GFF3913 at 119.068 kb on + strand, within GFF3913 at 119.069 kb on - strand, within GFF3913 at 119.069 kb on - strand, within GFF3913 at 119.170 kb on + strand, within GFF3913 at 119.170 kb on + strand, within GFF3913 at 119.170 kb on + strand, within GFF3913 at 119.170 kb on + strand, within GFF3913 at 119.170 kb on + strand, within GFF3913 at 119.170 kb on + strand, within GFF3913 at 119.170 kb on + strand, within GFF3913 at 119.170 kb on + strand, within GFF3913 at 119.171 kb on - strand, within GFF3913 at 119.171 kb on - strand, within GFF3913 at 119.171 kb on - strand, within GFF3913 at 119.171 kb on - strand, within GFF3913 at 119.171 kb on - strand, within GFF3913 at 119.171 kb on - strand, within GFF3913 at 119.171 kb on - strand, within GFF3913 at 119.191 kb on + strand, within GFF3913 at 119.191 kb on + strand, within GFF3913 at 119.191 kb on + strand, within GFF3913 at 119.191 kb on + strand, within GFF3913 at 119.191 kb on + strand, within GFF3913 at 119.192 kb on - strand, within GFF3913 at 119.192 kb on - strand, within GFF3913 at 119.192 kb on - strand, within GFF3913 at 119.260 kb on + strand, within GFF3913 at 119.261 kb on - strand, within GFF3913 at 119.314 kb on + strand, within GFF3913 at 119.314 kb on + strand, within GFF3913 at 119.315 kb on - strand, within GFF3913 at 119.323 kb on + strand, within GFF3913 at 119.323 kb on + strand, within GFF3913 at 119.323 kb on + strand, within GFF3913 at 119.324 kb on - strand, within GFF3913 at 119.324 kb on - strand, within GFF3913 at 119.324 kb on - strand, within GFF3913 at 119.324 kb on - strand, within GFF3913 at 119.324 kb on - strand, within GFF3913 at 119.536 kb on + strand, within GFF3913 at 119.536 kb on + strand, within GFF3913 at 119.536 kb on + strand, within GFF3913 at 119.536 kb on + strand, within GFF3913 at 119.536 kb on + strand, within GFF3913 at 119.536 kb on + strand, within GFF3913 at 119.536 kb on + strand, within GFF3913 at 119.536 kb on - strand, within GFF3913 at 119.537 kb on - strand, within GFF3913 at 119.537 kb on - strand, within GFF3913 at 119.537 kb on - strand, within GFF3913 at 119.537 kb on - strand, within GFF3913 at 119.537 kb on - strand, within GFF3913 at 119.537 kb on - strand, within GFF3913 at 119.537 kb on - strand, within GFF3913 at 119.537 kb on - strand, within GFF3913 at 119.537 kb on - strand, within GFF3913 at 119.537 kb on - strand, within GFF3913 at 119.537 kb on - strand, within GFF3913 at 119.537 kb on - strand, within GFF3913 at 119.538 kb on - strand, within GFF3913 at 119.781 kb on + strand at 119.781 kb on + strand at 119.781 kb on + strand at 119.781 kb on + strand at 119.781 kb on + strand at 119.781 kb on + strand at 119.781 kb on + strand at 119.781 kb on + strand at 119.781 kb on + strand at 119.781 kb on + strand at 119.781 kb on + strand at 119.781 kb on + strand at 119.781 kb on + strand at 119.781 kb on + strand at 119.781 kb on + strand at 119.782 kb on - strand at 119.782 kb on - strand at 119.782 kb on - strand at 119.782 kb on - strand at 119.782 kb on - strand at 119.782 kb on - strand at 119.782 kb on - strand at 119.782 kb on - strand at 119.782 kb on - strand at 119.782 kb on - strand at 119.782 kb on - strand at 119.782 kb on - strand at 119.782 kb on - strand at 119.782 kb on - strand at 119.782 kb on - strand at 119.782 kb on - strand at 119.782 kb on - strand at 119.782 kb on - strand at 120.080 kb on + strand, within GFF3914 at 120.080 kb on + strand, within GFF3914 at 120.080 kb on + strand, within GFF3914 at 120.080 kb on + strand, within GFF3914 at 120.080 kb on + strand, within GFF3914 at 120.081 kb on - strand, within GFF3914 at 120.081 kb on - strand, within GFF3914 at 120.081 kb on - strand, within GFF3914 at 120.081 kb on - strand, within GFF3914 at 120.081 kb on - strand, within GFF3914 at 120.081 kb on - strand, within GFF3914 at 120.653 kb on + strand, within GFF3914 at 120.653 kb on + strand, within GFF3914 at 120.653 kb on + strand, within GFF3914 at 120.653 kb on + strand, within GFF3914 at 120.654 kb on - strand, within GFF3914 at 120.654 kb on - strand, within GFF3914
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 117,597 + -3.6 117,597 + -0.3 117,597 + -1.7 117,597 + +0.7 117,597 + -2.2 117,597 + +1.0 117,597 + -0.2 117,597 + -1.6 117,597 + -2.1 117,598 - +0.2 117,598 - +0.5 117,598 - +1.8 117,598 - +1.0 117,598 - +0.4 117,598 - +0.3 117,598 - +0.4 117,598 - +1.6 117,598 - +0.5 117,598 - +1.2 117,598 - +2.0 117,598 - -3.2 117,598 - +1.0 117,598 - +1.4 117,598 - -2.1 117,598 - +0.4 117,601 + -2.2 117,601 + -1.8 117,601 + +0.1 117,611 + +0.2 117,721 + -1.2 117,721 + -1.2 117,722 - -0.4 117,722 - -2.8 117,722 - -0.9 117,722 - -1.5 117,722 - -0.4 117,815 + -2.3 117,815 + -3.6 117,815 + -0.7 117,815 + +2.2 117,815 + -0.4 117,815 + -0.0 117,815 + +0.4 117,815 + -2.0 117,815 + +1.0 117,815 + -1.3 117,815 + +2.6 117,815 + +0.1 117,815 + +2.4 117,816 - -1.1 117,816 - -2.4 117,816 - +1.1 118,461 - GFF3912 0.86 -0.4 118,461 - GFF3912 0.86 +1.3 118,496 + +0.8 118,496 + -1.3 118,497 - -1.7 118,693 + +0.1 118,693 + -0.8 118,693 + +3.3 118,693 + +0.4 118,693 + +2.2 118,694 - +0.7 118,694 - -3.0 118,694 - -1.8 118,694 - -0.9 119,047 + GFF3913 0.39 +2.9 119,047 + GFF3913 0.39 +1.3 119,047 + GFF3913 0.39 -0.6 119,047 + GFF3913 0.39 +0.3 119,047 + GFF3913 0.39 -1.9 119,047 + GFF3913 0.39 -0.3 119,047 + GFF3913 0.39 +0.2 119,047 + GFF3913 0.39 -0.6 119,047 + GFF3913 0.39 -2.4 119,048 - GFF3913 0.39 -3.4 119,048 - GFF3913 0.39 -1.2 119,048 - GFF3913 0.39 +5.3 119,048 - GFF3913 0.39 +1.0 119,048 - GFF3913 0.39 +1.0 119,048 - GFF3913 0.39 +0.3 119,048 - GFF3913 0.39 -0.6 119,048 - GFF3913 0.39 -1.3 119,048 - GFF3913 0.39 -0.8 119,048 - GFF3913 0.39 +1.4 119,068 + GFF3913 0.40 -0.6 119,068 + GFF3913 0.40 -2.4 119,068 + GFF3913 0.40 +1.6 119,069 - GFF3913 0.40 -2.2 119,069 - GFF3913 0.40 -0.6 119,170 + GFF3913 0.49 -0.2 119,170 + GFF3913 0.49 -0.2 119,170 + GFF3913 0.49 +0.8 119,170 + GFF3913 0.49 -2.3 119,170 + GFF3913 0.49 -0.7 119,170 + GFF3913 0.49 +1.6 119,170 + GFF3913 0.49 -2.8 119,170 + GFF3913 0.49 +0.6 119,171 - GFF3913 0.49 -1.5 119,171 - GFF3913 0.49 -2.3 119,171 - GFF3913 0.49 -0.1 119,171 - GFF3913 0.49 -3.0 119,171 - GFF3913 0.49 -2.5 119,171 - GFF3913 0.49 +1.6 119,171 - GFF3913 0.49 +0.3 119,191 + GFF3913 0.51 -2.1 119,191 + GFF3913 0.51 -0.8 119,191 + GFF3913 0.51 -1.3 119,191 + GFF3913 0.51 +1.0 119,191 + GFF3913 0.51 -0.8 119,192 - GFF3913 0.51 -2.4 119,192 - GFF3913 0.51 -2.0 119,192 - GFF3913 0.51 -2.1 119,260 + GFF3913 0.56 +3.5 119,261 - GFF3913 0.57 -1.0 119,314 + GFF3913 0.61 -1.4 119,314 + GFF3913 0.61 -0.8 119,315 - GFF3913 0.61 +0.1 119,323 + GFF3913 0.62 +1.0 119,323 + GFF3913 0.62 +0.4 119,323 + GFF3913 0.62 +0.9 119,324 - GFF3913 0.62 +0.7 119,324 - GFF3913 0.62 +0.3 119,324 - GFF3913 0.62 +0.1 119,324 - GFF3913 0.62 +0.6 119,324 - GFF3913 0.62 -1.6 119,536 + GFF3913 0.80 -1.0 119,536 + GFF3913 0.80 -0.9 119,536 + GFF3913 0.80 +2.7 119,536 + GFF3913 0.80 +1.8 119,536 + GFF3913 0.80 +0.4 119,536 + GFF3913 0.80 -0.6 119,536 + GFF3913 0.80 +3.3 119,536 - GFF3913 0.80 +0.7 119,537 - GFF3913 0.80 +0.2 119,537 - GFF3913 0.80 +1.0 119,537 - GFF3913 0.80 +2.0 119,537 - GFF3913 0.80 -1.4 119,537 - GFF3913 0.80 +0.1 119,537 - GFF3913 0.80 -3.2 119,537 - GFF3913 0.80 +2.4 119,537 - GFF3913 0.80 +0.8 119,537 - GFF3913 0.80 +0.7 119,537 - GFF3913 0.80 -0.3 119,537 - GFF3913 0.80 -0.5 119,537 - GFF3913 0.80 +1.6 119,538 - GFF3913 0.80 -0.1 119,781 + -1.7 119,781 + -0.0 119,781 + -2.8 119,781 + +0.7 119,781 + -3.1 119,781 + -2.2 119,781 + +0.7 119,781 + -2.0 119,781 + -1.9 119,781 + -0.8 119,781 + -0.3 119,781 + +2.0 119,781 + -2.9 119,781 + -1.0 119,781 + -0.0 119,782 - -0.0 119,782 - -0.0 119,782 - +1.7 119,782 - +2.3 119,782 - -0.4 119,782 - -0.5 119,782 - +1.6 119,782 - -1.8 119,782 - -2.1 119,782 - +1.6 119,782 - -0.6 119,782 - -0.0 119,782 - -1.6 119,782 - -2.6 119,782 - +0.5 119,782 - -2.3 119,782 - -3.5 119,782 - -1.8 120,080 + GFF3914 0.21 -0.4 120,080 + GFF3914 0.21 -0.0 120,080 + GFF3914 0.21 +0.9 120,080 + GFF3914 0.21 -0.2 120,080 + GFF3914 0.21 -0.0 120,081 - GFF3914 0.21 -1.1 120,081 - GFF3914 0.21 -2.3 120,081 - GFF3914 0.21 -0.8 120,081 - GFF3914 0.21 -2.2 120,081 - GFF3914 0.21 -0.1 120,081 - GFF3914 0.21 -2.2 120,653 + GFF3914 0.64 -1.5 120,653 + GFF3914 0.64 -2.8 120,653 + GFF3914 0.64 -2.1 120,653 + GFF3914 0.64 -0.6 120,654 - GFF3914 0.65 +0.7 120,654 - GFF3914 0.65 -1.2
Or see this region's nucleotide sequence