Strain Fitness in Variovorax sp. SCN45 around GFF3845

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
43,246	+				-1.0
43,260	+				+0.5
43,475	+		GFF3844	0.24	+1.7
43,820	+		GFF3844	0.63	+0.8
44,007	-		GFF3844	0.85	+0.4
44,007	-		GFF3844	0.85	-1.0
44,007	-		GFF3844	0.85	+1.0
44,124	-				-2.1
44,797	+		GFF3845	0.19	+0.4
44,797	+		GFF3845	0.19	-2.2
44,797	+		GFF3845	0.19	-0.2
44,797	+		GFF3845	0.19	-1.0
44,797	+		GFF3845	0.19	-1.6
44,797	+		GFF3845	0.19	-1.0
44,797	+		GFF3845	0.19	-1.0
44,797	+		GFF3845	0.19	+0.9
44,798	-		GFF3845	0.19	-0.3
44,798	-		GFF3845	0.19	-1.7
44,798	-		GFF3845	0.19	-0.6
44,798	-		GFF3845	0.19	-0.3
44,798	-		GFF3845	0.19	-0.0
45,893	+		GFF3845	0.53	+0.4
45,894	-		GFF3845	0.53	+0.4
45,894	-		GFF3845	0.53	+2.0
47,406	-				-0.0
47,408	-				-2.0
47,408	-				-2.4
47,408	-				-0.3
47,408	-				-1.9
47,408	-				-0.3
47,408	-				+2.0
47,408	-				-0.8
47,408	-				-0.7
47,408	-				-0.0
47,408	-				-0.3
47,408	-				-0.6
47,408	-				-2.8
47,408	-				-0.4
47,408	-				+0.7
47,408	-				+0.4
47,408	-				+2.0
47,408	-				-0.3
47,408	-				+0.4
47,408	-				-3.4
47,408	-				-1.8
47,408	-				+0.9
47,408	-				-1.2
47,408	-				-1.7
47,408	-				-1.6
47,408	-				+3.4
47,408	-				-1.0
47,408	-				-1.9
47,408	-				-1.2
47,408	-				-0.3
47,408	-				-0.2
47,408	-				-0.3
47,408	-				-0.3
47,408	-				+2.0
47,408	-				+2.0
47,408	-				-0.3
47,408	-				-0.0
47,408	-				-2.2
47,408	-				+2.0
47,408	-				-0.6
47,408	-				-1.3
47,408	-				+0.4
47,408	-				+2.0
47,408	-				-1.0
47,408	-				-0.0
47,408	-				-1.3
47,408	-				+0.8
47,408	-				-1.0
47,412	-				-2.3
47,412	-				+1.5
47,412	-				-1.4
47,412	-				-0.8
47,412	-				-0.8
47,412	-				+1.0
47,412	-				-2.3
47,412	-				-0.2
47,412	-				+4.1
47,412	-				-2.1
47,412	-				+0.7
47,412	-				+0.8
47,412	-				+0.1
47,412	-				-3.0
47,412	-				-0.6
47,412	-				-3.1
47,412	-				-1.3
47,412	-				-0.0
47,412	-				-2.2
47,412	-				-1.5
47,412	-				-0.3
47,412	-				-0.6
47,412	-				-1.3
47,412	-				+0.8
47,420	-				-1.6
47,959	+				-0.8
47,959	+				-2.1
47,959	+				-0.1
47,959	+				-1.5
47,959	+				-1.9
47,959	+				-1.2
47,959	+				-0.9
47,959	+				-0.3
47,959	+				+0.5
47,959	+				-0.8
47,959	+				+1.5
47,959	+				-0.7
47,959	+				-1.6
47,959	+				-2.9
47,959	+				-1.0
47,959	+				-2.6
47,959	+				-0.1
47,959	+				-0.5
47,959	+				-0.6
47,959	+				+0.2
47,960	-				-1.2
47,960	-				-0.9
47,960	-				+2.9
47,960	-				-1.5
47,960	-				-1.2
47,960	-				-1.0
47,960	-				+0.3
47,960	-				-0.1
47,960	-				+0.9
47,960	-				-0.0
47,960	-				+0.1
47,960	-				+0.7
47,960	-				-1.0
47,960	-				-0.2
47,960	-				-1.0
47,960	-				-1.1
47,960	-				-0.1
47,960	-				+1.0
47,960	-				-0.6
47,960	-				-0.8
48,135	+		GFF3847	0.18	-0.0
48,136	-		GFF3847	0.18	+1.0
48,136	-		GFF3847	0.18	-0.3
48,136	-		GFF3847	0.18	+0.4