Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3825 and GFF3826 overlap by 4 nucleotides GFF3826 and GFF3827 overlap by 4 nucleotides GFF3827 and GFF3828 are separated by 139 nucleotides
GFF3825 - Autolysin sensor kinase (EC 2.7.3.-), at 14,791 to 15,789
GFF3825
GFF3826 - Response regulator receiver:LytTr DNA-binding region, at 15,786 to 16,541
GFF3826
GFF3827 - UPF0118 membrane protein SMc00793, at 16,538 to 17,818
GFF3827
GFF3828 - hypothetical protein, at 17,958 to 20,318
GFF3828
Position (kb) 16
17
18 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 15.714 kb on + strand at 15.715 kb on - strand at 15.715 kb on - strand at 15.715 kb on - strand at 15.715 kb on - strand at 16.099 kb on - strand, within GFF3826 at 16.260 kb on + strand, within GFF3826 at 16.260 kb on + strand, within GFF3826 at 16.260 kb on + strand, within GFF3826 at 16.261 kb on - strand, within GFF3826 at 16.261 kb on - strand, within GFF3826 at 16.275 kb on + strand, within GFF3826 at 16.275 kb on + strand, within GFF3826 at 16.281 kb on + strand, within GFF3826 at 16.281 kb on + strand, within GFF3826 at 16.281 kb on + strand, within GFF3826 at 16.281 kb on + strand, within GFF3826 at 16.281 kb on + strand, within GFF3826 at 16.282 kb on - strand, within GFF3826 at 16.282 kb on - strand, within GFF3826 at 16.282 kb on - strand, within GFF3826 at 16.282 kb on - strand, within GFF3826 at 16.282 kb on - strand, within GFF3826 at 16.282 kb on - strand, within GFF3826 at 16.422 kb on + strand, within GFF3826 at 16.423 kb on - strand, within GFF3826 at 16.423 kb on - strand, within GFF3826 at 16.423 kb on - strand, within GFF3826 at 16.848 kb on - strand, within GFF3827 at 16.848 kb on - strand, within GFF3827 at 16.955 kb on + strand, within GFF3827 at 17.186 kb on + strand, within GFF3827 at 17.187 kb on - strand, within GFF3827 at 17.255 kb on + strand, within GFF3827 at 17.256 kb on - strand, within GFF3827 at 17.256 kb on - strand, within GFF3827 at 17.256 kb on - strand, within GFF3827 at 17.331 kb on - strand, within GFF3827 at 17.378 kb on + strand, within GFF3827 at 17.504 kb on + strand, within GFF3827 at 17.504 kb on + strand, within GFF3827 at 17.504 kb on + strand, within GFF3827 at 17.504 kb on + strand, within GFF3827 at 17.504 kb on + strand, within GFF3827 at 17.504 kb on + strand, within GFF3827 at 17.505 kb on - strand, within GFF3827 at 17.505 kb on - strand, within GFF3827 at 17.505 kb on - strand, within GFF3827 at 17.505 kb on - strand, within GFF3827 at 17.505 kb on - strand, within GFF3827 at 17.816 kb on + strand at 17.843 kb on - strand at 17.881 kb on + strand at 17.998 kb on - strand at 18.493 kb on - strand, within GFF3828
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 15,714 + -1.5 15,715 - -1.6 15,715 - +0.1 15,715 - +0.4 15,715 - +0.8 16,099 - GFF3826 0.41 -0.8 16,260 + GFF3826 0.63 +1.4 16,260 + GFF3826 0.63 -0.8 16,260 + GFF3826 0.63 +1.4 16,261 - GFF3826 0.63 -0.6 16,261 - GFF3826 0.63 +0.9 16,275 + GFF3826 0.65 +0.3 16,275 + GFF3826 0.65 +0.8 16,281 + GFF3826 0.65 -0.5 16,281 + GFF3826 0.65 +2.8 16,281 + GFF3826 0.65 +1.7 16,281 + GFF3826 0.65 -0.9 16,281 + GFF3826 0.65 +2.8 16,282 - GFF3826 0.66 +1.1 16,282 - GFF3826 0.66 +2.1 16,282 - GFF3826 0.66 -0.3 16,282 - GFF3826 0.66 -2.0 16,282 - GFF3826 0.66 -1.3 16,282 - GFF3826 0.66 -1.9 16,422 + GFF3826 0.84 +0.8 16,423 - GFF3826 0.84 +0.5 16,423 - GFF3826 0.84 +2.1 16,423 - GFF3826 0.84 -1.3 16,848 - GFF3827 0.24 +1.2 16,848 - GFF3827 0.24 -1.0 16,955 + GFF3827 0.33 +0.4 17,186 + GFF3827 0.51 -1.4 17,187 - GFF3827 0.51 -1.3 17,255 + GFF3827 0.56 -0.4 17,256 - GFF3827 0.56 -0.5 17,256 - GFF3827 0.56 -0.0 17,256 - GFF3827 0.56 -1.4 17,331 - GFF3827 0.62 +0.1 17,378 + GFF3827 0.66 -0.0 17,504 + GFF3827 0.75 -0.9 17,504 + GFF3827 0.75 +1.3 17,504 + GFF3827 0.75 +0.7 17,504 + GFF3827 0.75 +1.0 17,504 + GFF3827 0.75 -2.4 17,504 + GFF3827 0.75 +2.8 17,505 - GFF3827 0.75 -0.6 17,505 - GFF3827 0.75 -0.6 17,505 - GFF3827 0.75 -1.3 17,505 - GFF3827 0.75 -0.6 17,505 - GFF3827 0.75 +0.9 17,816 + -0.8 17,843 - -1.6 17,881 + -1.9 17,998 - +0.4 18,493 - GFF3828 0.23 -0.9
Or see this region's nucleotide sequence